FvH4_2g03960

Transcriptional regulator of RNA polII, SAGA, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0004824
Physical Location & Seq
Reverse (-)
3129793 .. 3131818
2026 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g03960.t1

Sequence Viewer

Length: 1038 bp
ATGATGCCCAATCAGAGCTATTCTCGGATCGATACGTTGGAGCTGAAGGATCTGATTATTAAGAAGATTGGGCATCAAAGAGCGGAGAGGTACTTTGACATGATCAGGAGATTGTTTAGTGCCAAGATTAGCAAGTGTGAGTTCGACAAGTTTTGCAATCAGACTATTGGGAGGGAAAATATCCATCTGCATAACCGGCTTATAAAGTCCATTATCAAGAATGCCTGCCTTGCAAAAGCTCCACCCTTGAGAGGAGTTAAGAAAGCGGGAAGCCTTAATGCTAAAGTTGATAATGAGTATCCTGGGAGTTGCCTTCAGTCGATCTTTCCTAAATCCCCTCGCAAGGTCCGCTCTCCACTTAATCGAGACCACCGAAAGTTTCGGGATCGTCCAATTCCTTTGGTGCCAAATGGGAAGCCGCAAAATATGGTTTCTGAAGAACCAATTTCCAAAGCACAAGAGCAGCATGAATTGCTTTCTCTTGGCAGCAGGCCTCCGGTTGAAGTTGCATCAGTGGAGGATGGAGAAGAGGTTGAACAGGATGCAGGAAGTCCGGGTATTCAAAGTCGAAGTCCCGTAACGGCTCCTCTTGGTATATCTATGAATTTGGGTGGATCACGCAAATTTCTTCATAATGTATCAGTCTTTGGTGCATACCGCCCTAAGACCTGTCAAAACTGCGGTGAGCTACCTGATACAAGATCATTAAGAGGTCGTTTGCAGCAGAAGTTGGAGATGGAGGGTATGACTGTTTCTACTGACTGTCTTAACCTCTTGAATAACGGATTAGATGCTTATCTGAAGAGGTTAATTGAACCTTGTATTCGGTTAGCTGGGAGTAGGCATGAAAAAGAGCAACCGAATAGTCTGTACATACATGGTTCAAATGGGATGATTGGTAGGGGAGATATGCTAAGGGAAGCAAAGTATGCTACTATGGTAGATTTTCGTGCAGCAATGGAGTTAAACCCCCAAATACTTGGTGAAGATTGGGCCACACAGCTTGAGAAGATTTCTTTGCGAGCTTATGAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAGA-Tad1

Protein Analysis

346

Amino Acids

38.85

Weight (kDa)

9.25

Isoelectric Point (pI)

49.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAGA-Tad1 PF12767 5 - 277 1.5e-59 Transcriptional regulator of RNA polII, SAGA, subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 203
AccB1I GGYRCC 1 cut(s) 403
AccBSI CCGCTC 2 cut(s) 83, 351
AciI CCGC 6 cut(s) 83, 266, 349, 419, 658, 681
AclWI GGATC 4 cut(s) 35, 57, 393, 622
AcsI RAATTY 2 cut(s) 604, 623
AcuI CTGAAG 4 cut(s) 65, 299, 456, 821
AfaI GTAC 2 cut(s) 92, 872
AfiI CCNNNNNNNGG 2 cut(s) 251, 343
AgsI TTSAA 6 cut(s) 503, 536, 563, 778, 815, 885
AjnI CCWGG 1 cut(s) 301
AluBI AGCT 7 cut(s) 18, 43, 239, 688, 833, 1003, 1025
AluI AGCT 7 cut(s) 18, 43, 239, 688, 833, 1003, 1025
Alw26I GTCTC 1 cut(s) 360
AlwI GGATC 4 cut(s) 35, 57, 393, 622
AoxI GGCC 2 cut(s) 491, 993
ApeKI GCWGC 4 cut(s) 463, 486, 721, 953
ApoI RAATTY 2 cut(s) 604, 623
ArsI GACNNNNNNTTYG 2 cut(s) 556, 588
AspS9I GGNCC 2 cut(s) 346, 993
AsuC2I CCSGG 1 cut(s) 555
AsuHPI GGTGA 2 cut(s) 695, 995
AvaII GGWCC 1 cut(s) 346
BanI GGYRCC 1 cut(s) 403
BbvI GCAGC 4 cut(s) 475, 498, 733, 965
BccI CCATC 3 cut(s) 192, 515, 730
BceAI ACGGC 1 cut(s) 597
BciT130I CCWGG 1 cut(s) 303
BciVI GTATCC 1 cut(s) 309
BclI TGATCA 1 cut(s) 102
BcnI CCSGG 1 cut(s) 555
BcoDI GTCTC 1 cut(s) 360
BfuI GTATCC 1 cut(s) 309
BisI GCNGC 5 cut(s) 419, 464, 487, 722, 954
BlsI GCNGC 5 cut(s) 420, 465, 488, 723, 955
Bme1390I CCNGG 2 cut(s) 303, 555
Bme18I GGWCC 1 cut(s) 346
BmgT120I GGNCC 2 cut(s) 346, 993
BmiI GGNNCC 2 cut(s) 405, 585
BmrFI CCNGG 2 cut(s) 303, 555
BmsI GCATC 4 cut(s) 82, 518, 532, 781
BplI GAGNNNNNCTC 2 cut(s) 7, 39
Bpu10I CCTNAGC 1 cut(s) 914
BpuEI CTTGAG 2 cut(s) 268, 1025
BpuMI CCSGG 1 cut(s) 555
Bsa29I ATCGAT 1 cut(s) 30
BsaBI GATNNNNATC 1 cut(s) 795
BsaI GGTCTC 1 cut(s) 360
BsaJI CCNNGG 1 cut(s) 302
BsaWI WCCGGW 1 cut(s) 496
BsaXI ACNNNNNCTCC 2 cut(s) 516, 546
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 343
Bse118I RCCGGY 1 cut(s) 195
Bse3DI GCAATG 1 cut(s) 963
Bse8I GATNNNNATC 1 cut(s) 795
BseBI CCWGG 1 cut(s) 303
BseCI ATCGAT 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 302
BseGI GGATG 3 cut(s) 526, 547, 897
BseJI GATNNNNATC 1 cut(s) 795
BseLI CCNNNNNNNGG 2 cut(s) 251, 343
BseMI GCAATG 1 cut(s) 963
BseRI GAGGAG 2 cut(s) 267, 576
BseXI GCAGC 4 cut(s) 475, 498, 733, 965
BseYI CCCAGC 1 cut(s) 833
BsgI GTGCAG 1 cut(s) 972
BshFI GGCC 2 cut(s) 493, 995
BshNI GGYRCC 1 cut(s) 403
BshVI ATCGAT 1 cut(s) 30
BsiSI CCGG 3 cut(s) 196, 497, 554
BslFI GGGAC 1 cut(s) 558
BslI CCNNNNNNNGG 2 cut(s) 251, 343
BsmAI GTCTC 1 cut(s) 360
BsmFI GGGAC 1 cut(s) 558
BsmI GAATGC 1 cut(s) 226
BsnI GGCC 2 cut(s) 493, 995
Bso31I GGTCTC 1 cut(s) 360
Bsp1407I TGTACA 1 cut(s) 870
Bsp143I GATC 7 cut(s) 27, 49, 102, 321, 385, 614, 701
BspACI CCGC 6 cut(s) 83, 266, 349, 419, 658, 681
BspANI GGCC 2 cut(s) 493, 995
BspDI ATCGAT 1 cut(s) 30
BspLI GGNNCC 2 cut(s) 405, 585
BspPI GGATC 4 cut(s) 35, 57, 393, 622
BspT107I GGYRCC 1 cut(s) 403
BspTNI GGTCTC 1 cut(s) 360
BsrBI CCGCTC 2 cut(s) 83, 351
BsrDI GCAATG 1 cut(s) 963
BsrFI RCCGGY 1 cut(s) 195
BsrGI TGTACA 1 cut(s) 870
BssAI RCCGGY 1 cut(s) 195
BssECI CCNNGG 1 cut(s) 302
BssMI GATC 7 cut(s) 27, 49, 102, 321, 385, 614, 701
Bst2UI CCWGG 1 cut(s) 303
Bst4CI ACNGT 2 cut(s) 751, 764
Bst6I CTCTTC 3 cut(s) 522, 797, 1026
BstAPI GCANNNNNTGC 2 cut(s) 472, 929
BstAUI TGTACA 1 cut(s) 870
BstC8I GCNNGC 3 cut(s) 226, 491, 1023
BstDEI CTNAG 2 cut(s) 663, 914
BstF5I GGATG 3 cut(s) 526, 547, 897
BstKTI GATC 7 cut(s) 30, 52, 105, 324, 388, 617, 704
BstMAI GTCTC 1 cut(s) 360
BstMBI GATC 7 cut(s) 27, 49, 102, 321, 385, 614, 701
BstMWI GCNNNNNNNGC 5 cut(s) 196, 230, 348, 472, 929
BstNI CCWGG 1 cut(s) 303
BstSCI CCNGG 2 cut(s) 301, 553
BstV1I GCAGC 4 cut(s) 475, 498, 733, 965
BstX2I RGATCY 1 cut(s) 49
BstXI CCANNNNNNTGG 1 cut(s) 980
BstYI RGATCY 1 cut(s) 49
Bsu15I ATCGAT 1 cut(s) 30
BsuI GTATCC 1 cut(s) 309
BsuRI GGCC 2 cut(s) 493, 995
BsuTUI ATCGAT 1 cut(s) 30
BtsCI GGATG 3 cut(s) 526, 547, 897
BtsIMutI CAGTG 1 cut(s) 519
Cac8I GCNNGC 3 cut(s) 226, 491, 1023
Cfr10I RCCGGY 1 cut(s) 195
Cfr13I GGNCC 2 cut(s) 346, 993
ClaI ATCGAT 1 cut(s) 30
Csp6I GTAC 2 cut(s) 91, 871
CspCI CAANNNNNGTGG 2 cut(s) 985, 1020
CviAII CATG 4 cut(s) 100, 467, 845, 878
CviQI GTAC 2 cut(s) 91, 871
DdeI CTNAG 2 cut(s) 663, 914
DpnI GATC 7 cut(s) 29, 51, 104, 323, 387, 616, 703
DpnII GATC 7 cut(s) 27, 49, 102, 321, 385, 614, 701
Eam1104I CTCTTC 3 cut(s) 522, 797, 1026
EarI CTCTTC 3 cut(s) 522, 797, 1026
Eco147I AGGCCT 1 cut(s) 493
Eco31I GGTCTC 1 cut(s) 360
Eco47I GGWCC 1 cut(s) 346
Eco57I CTGAAG 4 cut(s) 65, 299, 456, 821
EcoRII CCWGG 1 cut(s) 301
FaeI CATG 4 cut(s) 103, 470, 848, 881
FaqI GGGAC 1 cut(s) 558
FatI CATG 4 cut(s) 99, 466, 844, 877
FauI CCCGC 1 cut(s) 259
FbaI TGATCA 1 cut(s) 102
Fnu4HI GCNGC 5 cut(s) 419, 464, 487, 722, 954
FokI GGATG 3 cut(s) 533, 554, 904
Fsp4HI GCNGC 5 cut(s) 419, 464, 487, 722, 954
GluI GCNGC 5 cut(s) 419, 464, 487, 722, 954
GsaI CCCAGC 1 cut(s) 837
HaeIII GGCC 2 cut(s) 493, 995
HapII CCGG 3 cut(s) 196, 497, 554
Hin1II CATG 4 cut(s) 103, 470, 848, 881
HpaII CCGG 3 cut(s) 196, 497, 554
HphI GGTGA 2 cut(s) 695, 995
Hpy188I TCNGA 6 cut(s) 15, 27, 54, 162, 436, 801
Hpy188III TCNNGA 5 cut(s) 106, 217, 365, 383, 775
HpyAV CCTTC 2 cut(s) 40, 323
HpyCH4III ACNGT 2 cut(s) 751, 764
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 8 cut(s) 156, 190, 233, 509, 545, 653, 721, 953
HpyF10VI GCNNNNNNNGC 5 cut(s) 196, 230, 348, 472, 929
HpyF3I CTNAG 2 cut(s) 663, 914
HpySE526I ACGT 1 cut(s) 35
Hsp92II CATG 4 cut(s) 103, 470, 848, 881
Ksp22I TGATCA 1 cut(s) 102
Kzo9I GATC 7 cut(s) 27, 49, 102, 321, 385, 614, 701
LmnI GCTCC 3 cut(s) 40, 244, 589
Lsp1109I GCAGC 4 cut(s) 475, 498, 733, 965
LweI GCATC 4 cut(s) 82, 518, 532, 781
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 1 cut(s) 577
MalI GATC 7 cut(s) 29, 51, 104, 323, 387, 616, 703
MbiI CCGCTC 2 cut(s) 83, 351
MboI GATC 7 cut(s) 27, 49, 102, 321, 385, 614, 701
MboII GAAGA 7 cut(s) 76, 449, 539, 620, 814, 998, 1021
MflI RGATCY 1 cut(s) 49
MluCI AATT 6 cut(s) 393, 444, 470, 604, 623, 810
MmeI TCCRAC 2 cut(s) 18, 711
MseI TTAA 8 cut(s) 60, 258, 276, 360, 707, 768, 809, 965
MspI CCGG 3 cut(s) 196, 497, 554
MspR9I CCNGG 2 cut(s) 303, 555
Mva1269I GAATGC 1 cut(s) 226
MvaI CCWGG 1 cut(s) 303
MwoI GCNNNNNNNGC 5 cut(s) 196, 230, 348, 472, 929
NciI CCSGG 1 cut(s) 555
NdeII GATC 7 cut(s) 27, 49, 102, 321, 385, 614, 701
NlaIII CATG 4 cut(s) 103, 470, 848, 881
NlaIV GGNNCC 2 cut(s) 405, 585
PceI AGGCCT 1 cut(s) 493
PcsI WCGNNNNNNNCGW 1 cut(s) 370
PctI GAATGC 1 cut(s) 226
PkrI GCNGC 5 cut(s) 420, 465, 488, 723, 955
PsiI TTATAA 1 cut(s) 203
Psp6I CCWGG 1 cut(s) 301
PspFI CCCAGC 1 cut(s) 833
PspGI CCWGG 1 cut(s) 301
PspN4I GGNNCC 2 cut(s) 405, 585
PspPI GGNCC 2 cut(s) 346, 993
PsuI RGATCY 1 cut(s) 49
RsaI GTAC 2 cut(s) 92, 872
RsaNI GTAC 2 cut(s) 91, 871
SaqAI TTAA 8 cut(s) 60, 258, 276, 360, 707, 768, 809, 965
SatI GCNGC 5 cut(s) 419, 464, 487, 722, 954
Sau3AI GATC 7 cut(s) 27, 49, 102, 321, 385, 614, 701
Sau96I GGNCC 2 cut(s) 346, 993
ScrFI CCNGG 2 cut(s) 303, 555
SfaNI GCATC 4 cut(s) 82, 518, 532, 781
SinI GGWCC 1 cut(s) 346
SmlI CTYRAG 2 cut(s) 247, 1004
SmoI CTYRAG 2 cut(s) 247, 1004
Sse9I AATT 6 cut(s) 393, 444, 470, 604, 623, 810
SseBI AGGCCT 1 cut(s) 493
SsiI CCGC 6 cut(s) 83, 266, 349, 419, 658, 681
StuI AGGCCT 1 cut(s) 493
StyD4I CCNGG 2 cut(s) 301, 553
TaaI ACNGT 2 cut(s) 751, 764
TaiI ACGT 1 cut(s) 38
TaqI TCGA 5 cut(s) 30, 144, 320, 364, 568
TasI AATT 6 cut(s) 393, 444, 470, 604, 623, 810
TatI WGTACW 1 cut(s) 870
TauI GCSGC 1 cut(s) 421
Tru1I TTAA 8 cut(s) 60, 258, 276, 360, 707, 768, 809, 965
Tru9I TTAA 8 cut(s) 60, 258, 276, 360, 707, 768, 809, 965
TscAI CASTG 1 cut(s) 519
TseI GCWGC 4 cut(s) 463, 486, 721, 953
TspDTI ATGAA 4 cut(s) 483, 617, 620, 861
TspGWI ACGGA 1 cut(s) 798
TspRI CASTG 1 cut(s) 519
VpaK11BI GGWCC 1 cut(s) 346
XapI RAATTY 2 cut(s) 604, 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.