FvH4_2g03962

Transcriptional regulator of RNA polII, SAGA, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0004824
Physical Location & Seq
Reverse (-)
3136869 .. 3138959
2091 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g03962.t1

Sequence Viewer

Length: 972 bp
ATGAAGATGTTGCCCAATCAAAGCTTTTCTCGTATCGACACTTTGGAGCTGAAATCGATGATTGTTAGAAAGATTGGGCATGAGAGAGCTGAGAAATACTTTGAACTGATCAGAAGATTGTTTAGTTTGAAGATTAGTAAGTGTGAATTCAACAAGTTCTGCATTAGGATTATAGGAAGGGACAATCTCCCTCTTCATAACCGGCTTATTAGCTCTATCATCAAGAATGCACACCTTGCAAAAGCTCCACCATTGCCAAGTTTTAGGAAACCCGGAAGCACTCTTACTGTTAATGTTGCAAACGAATATAAGAGGAATGGAGATGCAATTCCTCAATCCCCTCTGACAGGCCGGTCTGCAGTTGATGGAGACCACAAGTTTCTTGACCGTCCAACTCCTTTGGGGCCAAATGGGAAGCCCCAAGGTGTTGCATATCAGGAATCAGTCTCCAAAGCACATCAAAATGCTACTGAATTGCTTTCTCTTGGCAGTAGGCCTCCAATTGAAGTAGCCTCGGTGGAAGATGGAGAAGAGGTTGAACAGGCTGCAGGAAGCCCGAGTATTCAAAGTAGGAGCCCAGTTACAGCTCCTTTTGGTTTATCTATGAATTTGGGTGGATCACGCAAATTTCTCCATAGTGCATCAGTATGTCGTACATACCACCTGGAAACCTGTCAAAACTGCAGTGAGCTACCTGATACAAGATCATTAAAAAGTCGTTTGGAGCGGAAATTGCAGATGGAGGGTATCAATGCTTCTGTTGACTGTGTTAACCTCTTGAATAATGGATTAGATGCTTATTTGAGGAGATTAATTGAACCTTGTATAAGGTTCGCTGGGATGAGGCAAAGAGAATCTACTTGTGCAACTATGTTAGATTTCCGTGCATCGGTGGAGTTAAATCCTCAGATACTCGGTGAAGACTGGGGCATACAGCTTGAGAAGATTGTCTTTCGTGCTTCAGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAGA-Tad1

Protein Analysis

324

Amino Acids

36.0

Weight (kDa)

9.1

Isoelectric Point (pI)

46.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAGA-Tad1 PF12767 7 - 277 6.4e-54 Transcriptional regulator of RNA polII, SAGA, subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 352
AccBSI CCGCTC 1 cut(s) 727
AciI CCGC 1 cut(s) 727
AclWI GGATC 1 cut(s) 625
AcsI RAATTY 3 cut(s) 146, 607, 626
AcuI CTGAAG 1 cut(s) 945
AfaI GTAC 1 cut(s) 655
AfiI CCNNNNNNNGG 2 cut(s) 347, 889
AgsI TTSAA 8 cut(s) 104, 130, 151, 506, 539, 566, 781, 818
AjnI CCWGG 1 cut(s) 663
AluBI AGCT 8 cut(s) 24, 49, 89, 213, 245, 587, 691, 937
AluI AGCT 8 cut(s) 24, 49, 89, 213, 245, 587, 691, 937
Alw26I GTCTC 2 cut(s) 363, 451
AlwI GGATC 1 cut(s) 625
Ama87I CYCGRG 1 cut(s) 556
AoxI GGCC 3 cut(s) 349, 404, 494
ApeKI GCWGC 1 cut(s) 545
ApoI RAATTY 3 cut(s) 146, 607, 626
AseI ATTAAT 1 cut(s) 812
AspS9I GGNCC 1 cut(s) 404
AsuC2I CCSGG 1 cut(s) 273
AsuHPI GGTGA 1 cut(s) 929
AvaI CYCGRG 1 cut(s) 556
BanII GRGCYC 1 cut(s) 578
BarI GAAGNNNNNNTAC 4 cut(s) 268, 300, 739, 771
BbsI GAAGAC 1 cut(s) 927
BbvI GCAGC 1 cut(s) 532
BccI CCATC 3 cut(s) 359, 518, 733
BciT130I CCWGG 1 cut(s) 665
BclI TGATCA 1 cut(s) 108
BcnI CCSGG 1 cut(s) 273
BcoDI GTCTC 2 cut(s) 363, 451
BfmI CTRYAG 3 cut(s) 357, 546, 682
BisI GCNGC 1 cut(s) 546
BlsI GCNGC 1 cut(s) 547
Bme1390I CCNGG 2 cut(s) 273, 665
BmeT110I CYCGRG 1 cut(s) 556
BmgT120I GGNCC 1 cut(s) 404
BmiI GGNNCC 2 cut(s) 405, 575
BmrFI CCNGG 2 cut(s) 273, 665
BmrI ACTGGG 2 cut(s) 572, 934
BmsI GCATC 4 cut(s) 313, 650, 784, 896
BmuI ACTGGG 2 cut(s) 572, 934
BpiI GAAGAC 1 cut(s) 927
BpuEI CTTGAG 1 cut(s) 959
BpuMI CCSGG 1 cut(s) 273
Bsa29I ATCGAT 1 cut(s) 56
BsaI GGTCTC 1 cut(s) 363
BsaJI CCNNGG 2 cut(s) 421, 513
BsaXI ACNNNNNCTCC 2 cut(s) 519, 549
Bsc4I CCNNNNNNNGG 2 cut(s) 347, 889
Bse118I RCCGGY 2 cut(s) 201, 351
Bse1I ACTGG 2 cut(s) 578, 929
Bse3DI GCAATG 1 cut(s) 251
BseBI CCWGG 1 cut(s) 665
BseCI ATCGAT 1 cut(s) 56
BseDI CCNNGG 2 cut(s) 421, 513
BseGI GGATG 1 cut(s) 846
BseLI CCNNNNNNNGG 2 cut(s) 347, 889
BseMI GCAATG 1 cut(s) 251
BseMII CTCAG 2 cut(s) 81, 920
BseNI ACTGG 2 cut(s) 578, 929
BseRI GAGGAG 1 cut(s) 820
BseXI GCAGC 1 cut(s) 532
BseYI CCCAGC 1 cut(s) 836
BshFI GGCC 3 cut(s) 351, 406, 496
BshVI ATCGAT 1 cut(s) 56
BsiHKCI CYCGRG 1 cut(s) 556
BsiSI CCGG 3 cut(s) 202, 273, 352
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 2 cut(s) 347, 889
BsmAI GTCTC 2 cut(s) 363, 451
BsmFI GGGAC 1 cut(s) 194
BsmI GAATGC 1 cut(s) 232
BsnI GGCC 3 cut(s) 351, 406, 496
Bso31I GGTCTC 1 cut(s) 363
BsoBI CYCGRG 1 cut(s) 556
Bsp1286I GDGCHC 1 cut(s) 578
Bsp143I GATC 3 cut(s) 108, 617, 704
BspACI CCGC 1 cut(s) 727
BspANI GGCC 3 cut(s) 351, 406, 496
BspCNI CTCAG 2 cut(s) 82, 919
BspDI ATCGAT 1 cut(s) 56
BspLI GGNNCC 2 cut(s) 405, 575
BspMAI CTGCAG 3 cut(s) 361, 550, 686
BspPI GGATC 1 cut(s) 625
BspTNI GGTCTC 1 cut(s) 363
BsrBI CCGCTC 1 cut(s) 727
BsrDI GCAATG 1 cut(s) 251
BsrFI RCCGGY 2 cut(s) 201, 351
BsrI ACTGG 2 cut(s) 578, 929
BssAI RCCGGY 2 cut(s) 201, 351
BssECI CCNNGG 2 cut(s) 421, 513
BssMI GATC 3 cut(s) 108, 617, 704
BssT1I CCWWGG 1 cut(s) 421
Bst2UI CCWGG 1 cut(s) 665
Bst4CI ACNGT 3 cut(s) 289, 389, 767
Bst6I CTCTTC 2 cut(s) 198, 525
BstAPI GCANNNNNTGC 1 cut(s) 236
BstDEI CTNAG 2 cut(s) 90, 906
BstENI CCTNNNNNAGG 1 cut(s) 345
BstF5I GGATG 1 cut(s) 846
BstKTI GATC 3 cut(s) 111, 620, 707
BstMAI GTCTC 2 cut(s) 363, 451
BstMBI GATC 3 cut(s) 108, 617, 704
BstMWI GCNNNNNNNGC 2 cut(s) 236, 733
BstNI CCWGG 1 cut(s) 665
BstSCI CCNGG 2 cut(s) 271, 663
BstSFI CTRYAG 3 cut(s) 357, 546, 682
BstV1I GCAGC 1 cut(s) 532
BstV2I GAAGAC 1 cut(s) 927
Bsu15I ATCGAT 1 cut(s) 56
BsuRI GGCC 3 cut(s) 351, 406, 496
BsuTUI ATCGAT 1 cut(s) 56
BtsCI GGATG 1 cut(s) 846
BtsI GCAGTG 1 cut(s) 691
BtsIMutI CAGTG 1 cut(s) 691
Cfr10I RCCGGY 2 cut(s) 201, 351
Cfr13I GGNCC 1 cut(s) 404
ClaI ATCGAT 1 cut(s) 56
Csp6I GTAC 1 cut(s) 654
CviAII CATG 1 cut(s) 80
CviQI GTAC 1 cut(s) 654
DdeI CTNAG 2 cut(s) 90, 906
DpnI GATC 3 cut(s) 110, 619, 706
DpnII GATC 3 cut(s) 108, 617, 704
DrdI GACNNNNNNGTC 1 cut(s) 352
DseDI GACNNNNNNGTC 1 cut(s) 352
Eam1104I CTCTTC 2 cut(s) 198, 525
EarI CTCTTC 2 cut(s) 198, 525
Eco130I CCWWGG 1 cut(s) 421
Eco147I AGGCCT 1 cut(s) 496
Eco24I GRGCYC 1 cut(s) 578
Eco31I GGTCTC 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 945
Eco88I CYCGRG 1 cut(s) 556
EcoNI CCTNNNNNAGG 1 cut(s) 345
EcoRI GAATTC 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 663
EcoT14I CCWWGG 1 cut(s) 421
EcoT38I GRGCYC 1 cut(s) 578
ErhI CCWWGG 1 cut(s) 421
FaeI CATG 1 cut(s) 83
FalI AAGNNNNNCTT 2 cut(s) 935, 967
FaqI GGGAC 1 cut(s) 194
FatI CATG 1 cut(s) 79
FbaI TGATCA 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 546
FokI GGATG 1 cut(s) 853
FriOI GRGCYC 1 cut(s) 578
Fsp4HI GCNGC 1 cut(s) 546
GluI GCNGC 1 cut(s) 546
GsaI CCCAGC 1 cut(s) 840
HaeIII GGCC 3 cut(s) 351, 406, 496
HapII CCGG 3 cut(s) 202, 273, 352
Hin1II CATG 1 cut(s) 83
HincII GTYRAC 2 cut(s) 763, 772
HindII GTYRAC 2 cut(s) 763, 772
HindIII AAGCTT 1 cut(s) 22
HinfI GANTC 2 cut(s) 440, 854
HpaI GTTAAC 1 cut(s) 772
HpaII CCGG 3 cut(s) 202, 273, 352
HphI GGTGA 1 cut(s) 929
Hpy166II GTNNAC 2 cut(s) 763, 772
Hpy188I TCNGA 4 cut(s) 113, 345, 909, 964
Hpy188III TCNNGA 4 cut(s) 223, 383, 437, 778
Hpy8I GTNNAC 2 cut(s) 763, 772
HpyAV CCTTC 1 cut(s) 171
HpyCH4III ACNGT 3 cut(s) 289, 389, 767
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 733
HpyF3I CTNAG 2 cut(s) 90, 906
Hsp92II CATG 1 cut(s) 83
Ksp22I TGATCA 1 cut(s) 108
KspAI GTTAAC 1 cut(s) 772
Kzo9I GATC 3 cut(s) 108, 617, 704
LmnI GCTCC 5 cut(s) 46, 250, 573, 592, 724
Lsp1109I GCAGC 1 cut(s) 532
LweI GCATC 4 cut(s) 313, 650, 784, 896
MaeIII GTNAC 1 cut(s) 580
MalI GATC 3 cut(s) 110, 619, 706
MbiI CCGCTC 1 cut(s) 727
MboI GATC 3 cut(s) 108, 617, 704
MboII GAAGA 8 cut(s) 16, 126, 142, 185, 533, 542, 932, 955
MfeI CAATTG 1 cut(s) 501
MhlI GDGCHC 1 cut(s) 578
MluCI AATT 8 cut(s) 146, 327, 473, 501, 607, 626, 731, 813
MmeI TCCRAC 1 cut(s) 416
MseI TTAA 5 cut(s) 291, 710, 771, 812, 899
MslI CAYNNNNRTG 2 cut(s) 462, 646
MspI CCGG 3 cut(s) 202, 273, 352
MspR9I CCNGG 2 cut(s) 273, 665
MunI CAATTG 1 cut(s) 501
Mva1269I GAATGC 1 cut(s) 232
MvaI CCWGG 1 cut(s) 665
MwoI GCNNNNNNNGC 2 cut(s) 236, 733
NciI CCSGG 1 cut(s) 273
NdeII GATC 3 cut(s) 108, 617, 704
NlaIII CATG 1 cut(s) 83
NlaIV GGNNCC 2 cut(s) 405, 575
PceI AGGCCT 1 cut(s) 496
PctI GAATGC 1 cut(s) 232
PfeI GAWTC 2 cut(s) 440, 854
PkrI GCNGC 1 cut(s) 547
PshBI ATTAAT 1 cut(s) 812
Psp6I CCWGG 1 cut(s) 663
PspFI CCCAGC 1 cut(s) 836
PspGI CCWGG 1 cut(s) 663
PspN4I GGNNCC 2 cut(s) 405, 575
PspPI GGNCC 1 cut(s) 404
PstI CTGCAG 3 cut(s) 361, 550, 686
RsaI GTAC 1 cut(s) 655
RsaNI GTAC 1 cut(s) 654
RseI CAYNNNNRTG 2 cut(s) 462, 646
SaqAI TTAA 5 cut(s) 291, 710, 771, 812, 899
SatI GCNGC 1 cut(s) 546
Sau3AI GATC 3 cut(s) 108, 617, 704
Sau96I GGNCC 1 cut(s) 404
ScrFI CCNGG 2 cut(s) 273, 665
SduI GDGCHC 1 cut(s) 578
SfaNI GCATC 4 cut(s) 313, 650, 784, 896
SfcI CTRYAG 3 cut(s) 357, 546, 682
SmiMI CAYNNNNRTG 2 cut(s) 462, 646
SmlI CTYRAG 1 cut(s) 938
SmoI CTYRAG 1 cut(s) 938
Sse9I AATT 8 cut(s) 146, 327, 473, 501, 607, 626, 731, 813
SseBI AGGCCT 1 cut(s) 496
SsiI CCGC 1 cut(s) 727
StuI AGGCCT 1 cut(s) 496
StyD4I CCNGG 2 cut(s) 271, 663
StyI CCWWGG 1 cut(s) 421
TaaI ACNGT 3 cut(s) 289, 389, 767
TaqI TCGA 2 cut(s) 36, 56
TasI AATT 8 cut(s) 146, 327, 473, 501, 607, 626, 731, 813
TfiI GAWTC 2 cut(s) 440, 854
Tru1I TTAA 5 cut(s) 291, 710, 771, 812, 899
Tru9I TTAA 5 cut(s) 291, 710, 771, 812, 899
TscAI CASTG 1 cut(s) 691
TseI GCWGC 1 cut(s) 545
TspDTI ATGAA 3 cut(s) 17, 185, 620
TspGWI ACGGA 1 cut(s) 872
TspRI CASTG 1 cut(s) 691
VspI ATTAAT 1 cut(s) 812
XagI CCTNNNNNAGG 1 cut(s) 345
XapI RAATTY 3 cut(s) 146, 607, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.