Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004824

Physical Location & Seq

Genomic Coordinates Reverse (-)

15900868 .. 15904175

Gene Structure 3308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G141100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGTGCCCAATCAAAGCTATACTCGTATCGACACTTTAGAGCTGAAAGGTCTGATTATCCAAAGGATTGGGCATCAGAGAGCTGAGAAATACTTTGATCTGATCAGGAGATTGTTTAGTTCAAAGATTAGCAAGTGTGAATTCGACAAGTTTTGCAATCGGACTATTGGGAGGGAAAATGTCCATCTTCATAACCGACTTATCAAATCAATTATCAAGAATGCCTGCCTTGCAAAAGTTCCACCCTTGACAGGTATTAAGAAAGGGGGTAGTACCCTGAATGTTAAAGTGGCGAATGGCTGTCAGAAGAATGGTTTTCAATCAGTTAATGCGGATGCATTTCCTCAATCTCCTCGCAAGGGCAGGTCTCCAGTTAATCGGGAACGCAAGTTCCGGGACCGCCCAAGCCCTTTGGGGCCAAATGGAAAGCCCCAAAATTTGGCATCTGAGGAGTTCATTTCTAAAGCACTGGAGCAGCAAAGCGCTAGTGAATTGCTTTCTCTTGGAAGCAGACCTCCTGTTGAAGTTGCCTCTGTAGAAGATGGAGAAGAGGTCGAACAGGACGCAGGAAGCCCATCTATTCAAAGTAGAAGCCCAGTAACAGCTCCTCTAGGTATAAATTTGGGTGGATCACGTAAAGCTCTTCCTAATGTATCATTGTGTAGTACTTACCACCCTGAGACCTGTCAAAACTGTGGCGAGCTACCTGATACAAGATCATTAAGAAGTCGTTTGGAGCGGAAGTTGGAATTGGAGGGCGTTAGTGTCTCTGTAGACTGTGTTAACCTCTTGAATAATGGATTAGATGCTTACCTAAAGAGATTAATAGAACCTTGTATTCAGCTAGCTGGGACAAGGCATGGCAATGAGCACTTAAAACAACTAAGTGGCTCATACCCGTACAAAGATGGTTTGAATGGGATGTCACTTCCGAGAAATATGCAAAGAGAAAGAAAATCTACTTATGTGACTGTATCGGATTTTTCTACCTCAGTTGAGCTAAATCCCCAGATACTCGGTGCAGATTGGGCCATACAGCGTGAGAAGATTGTCTTGTGTGCTTCTGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAGA-Tad1

Protein Analysis

358

Amino Acids

39.51

Weight (kDa)

9.18

Isoelectric Point (pI)

46.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33890 AT4G33890
fragaria_vesca	FvH4_2g03960 FvH4_2g03962
malus_domestica	MD05G1096600.v1.1 MD10G1103000.v1.1
prunus_persica	Prupe.8G141100_v2.0.a1 Prupe.8G141200_v2.0.a1 Prupe.8G141200_v2.0.a1
pyrus_communis	pycom05g09550 pycom10g08870
rosa_chinensis	RchiOBHm_Chr6g0253011 RchiOBHm_Chr6g0253021
rosa_laevigata	RLG00000015043 RLG00000015044
rosa_multiflora	Rmu_sc0002560.1_g000010 Rmu_sc0002560.1_g000011
rosa_roxburghii	Rroxscaffold_7G00212190 Rroxscaffold_7G00212200
rosa_rugosa	Rorug05G0542800 Rorug05G0542900
rosa_samantha	Rh6AG056700 Rh6AG056800 Rh6BG051100 Rh6BG051300 Rh6CG049100 Rh6CG049200 Rh6DG044800 Rh6DG044900
rosa_wichuraiana	Rw6G005180 Rw6G005190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	354
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	439
AccBSI	CCGCTC	1 cut(s)	739
AccI	GTMKAC	1 cut(s)	774
AciI	CCGC	3 cut(s)	332, 400, 739
AclWI	GGATC	1 cut(s)	637
AcsI	RAATTY	3 cut(s)	140, 436, 619
AfaI	GTAC	3 cut(s)	274, 667, 902
AfeI	AGCGCT	1 cut(s)	484
AfiI	CCNNNNNNNGG	3 cut(s)	251, 359, 439
AgsI	TTSAA	6 cut(s)	123, 320, 524, 584, 793, 916
AjuI	GAANNNNNNNTTGG	2 cut(s)	734, 766
AloI	GAACNNNNNNTCC	4 cut(s)	374, 375, 406, 407
AluBI	AGCT	9 cut(s)	18, 43, 83, 605, 641, 703, 844, 848, 1000
AluI	AGCT	9 cut(s)	18, 43, 83, 605, 641, 703, 844, 848, 1000
Alw21I	GWGCWC	1 cut(s)	873
Alw26I	GTCTC	3 cut(s)	372, 674, 772
AlwI	GGATC	1 cut(s)	637
Aor51HI	AGCGCT	1 cut(s)	484
AoxI	GGCC	2 cut(s)	416, 1029
ApeKI	GCWGC	1 cut(s)	475
ApoI	RAATTY	3 cut(s)	140, 436, 619
AseI	ATTAAT	1 cut(s)	824
AspLEI	GCGC	1 cut(s)	485
AspS9I	GGNCC	3 cut(s)	397, 416, 1029
AsuC2I	CCSGG	1 cut(s)	395
AsuNHI	GCTAGC	1 cut(s)	844
AvaII	GGWCC	1 cut(s)	397
BaeGI	GKGCMC	1 cut(s)	9
BanI	GGYRCC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	873
BbvI	GCAGC	1 cut(s)	487
BccI	CCATC	4 cut(s)	192, 536, 583, 902
BcgI	CGANNNNNNTGC	2 cut(s)	922, 956
BclI	TGATCA	1 cut(s)	102
BcnI	CCSGG	1 cut(s)	395
BcoDI	GTCTC	3 cut(s)	372, 674, 772
BfaI	CTAG	3 cut(s)	486, 611, 845
BfmI	CTRYAG	2 cut(s)	534, 771
BfoI	RGCGCY	1 cut(s)	486
BfuAI	ACCTGC	1 cut(s)	354
BisI	GCNGC	1 cut(s)	476
BlsI	GCNGC	1 cut(s)	477
BmcAI	AGTACT	1 cut(s)	667
Bme1390I	CCNGG	1 cut(s)	395
Bme18I	GGWCC	1 cut(s)	397
BmgT120I	GGNCC	3 cut(s)	397, 416, 1029
BmiI	GGNNCC	3 cut(s)	6, 398, 417
BmrFI	CCNGG	1 cut(s)	395
BmrI	ACTGGG	1 cut(s)	590
BmsI	GCATC	4 cut(s)	82, 325, 452, 796
BmtI	GCTAGC	1 cut(s)	848
BmuI	ACTGGG	1 cut(s)	590
BpmI	CTGGAG	2 cut(s)	354, 491
BpuMI	CCSGG	1 cut(s)	395
BsaAI	YACGTR	1 cut(s)	635
BsaI	GGTCTC	2 cut(s)	372, 674
BsaXI	ACNNNNNCTCC	4 cut(s)	537, 567, 728, 758
Bsc4I	CCNNNNNNNGG	3 cut(s)	251, 359, 439
Bse1I	ACTGG	3 cut(s)	371, 474, 596
Bse3DI	GCAATG	1 cut(s)	871
BseGI	GGATG	2 cut(s)	340, 927
BseLI	CCNNNNNNNGG	3 cut(s)	251, 359, 439
BseMI	GCAATG	1 cut(s)	871
BseMII	CTCAG	4 cut(s)	75, 438, 669, 1005
BseNI	ACTGG	3 cut(s)	371, 474, 596
BseRI	GAGGAG	3 cut(s)	342, 464, 597
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	1 cut(s)	487
BseYI	CCCAGC	1 cut(s)	848
BsgI	GTGCAG	1 cut(s)	1041
BshFI	GGCC	2 cut(s)	418, 1031
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	873
BsiSI	CCGG	1 cut(s)	394
BslFI	GGGAC	2 cut(s)	410, 865
BslI	CCNNNNNNNGG	3 cut(s)	251, 359, 439
BsmAI	GTCTC	3 cut(s)	372, 674, 772
BsmFI	GGGAC	2 cut(s)	410, 865
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	2 cut(s)	418, 1031
Bso31I	GGTCTC	2 cut(s)	372, 674
Bsp1286I	GDGCHC	2 cut(s)	9, 873
Bsp143I	GATC	4 cut(s)	97, 102, 629, 716
BspACI	CCGC	3 cut(s)	332, 400, 739
BspANI	GGCC	2 cut(s)	418, 1031
BspCNI	CTCAG	4 cut(s)	76, 439, 670, 1004
BspLI	GGNNCC	3 cut(s)	6, 398, 417
BspMI	ACCTGC	1 cut(s)	354
BspOI	GCTAGC	1 cut(s)	848
BspPI	GGATC	1 cut(s)	637
BspQI	GCTCTTC	1 cut(s)	648
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	2 cut(s)	372, 674
BsrBI	CCGCTC	1 cut(s)	739
BsrDI	GCAATG	1 cut(s)	871
BsrI	ACTGG	3 cut(s)	371, 474, 596
BssMI	GATC	4 cut(s)	97, 102, 629, 716
Bst4CI	ACNGT	3 cut(s)	695, 779, 973
Bst6I	CTCTTC	3 cut(s)	543, 648, 1062
BstBAI	YACGTR	1 cut(s)	635
BstC8I	GCNNGC	3 cut(s)	226, 701, 846
BstDEI	CTNAG	5 cut(s)	84, 447, 678, 884, 991
BstF5I	GGATG	2 cut(s)	340, 927
BstH2I	RGCGCY	1 cut(s)	486
BstHHI	GCGC	1 cut(s)	485
BstKTI	GATC	4 cut(s)	100, 105, 632, 719
BstMAI	GTCTC	3 cut(s)	372, 674, 772
BstMBI	GATC	4 cut(s)	97, 102, 629, 716
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 1028
BstSCI	CCNGG	1 cut(s)	393
BstSFI	CTRYAG	2 cut(s)	534, 771
BstSLI	GKGCMC	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	487
BstXI	CCANNNNNNTGG	1 cut(s)	68
BsuRI	GGCC	2 cut(s)	418, 1031
BtsCI	GGATG	2 cut(s)	340, 927
BtsIMutI	CAGTG	1 cut(s)	467
BveI	ACCTGC	1 cut(s)	354
Cac8I	GCNNGC	3 cut(s)	226, 701, 846
CfoI	GCGC	1 cut(s)	485
Cfr13I	GGNCC	3 cut(s)	397, 416, 1029
CseI	GACGC	1 cut(s)	572
Csp6I	GTAC	3 cut(s)	273, 666, 901
CviAII	CATG	1 cut(s)	860
CviQI	GTAC	3 cut(s)	273, 666, 901
DdeI	CTNAG	5 cut(s)	84, 447, 678, 884, 991
DpnI	GATC	4 cut(s)	99, 104, 631, 718
DpnII	GATC	4 cut(s)	97, 102, 629, 716
Eam1104I	CTCTTC	3 cut(s)	543, 648, 1062
EarI	CTCTTC	3 cut(s)	543, 648, 1062
Eco31I	GGTCTC	2 cut(s)	372, 674
Eco47I	GGWCC	1 cut(s)	397
Eco47III	AGCGCT	1 cut(s)	484
EcoRI	GAATTC	1 cut(s)	140
EcoT22I	ATGCAT	1 cut(s)	340
FaeI	CATG	1 cut(s)	863
FaiI	YATR	8 cut(s)	21, 192, 617, 861, 895, 941, 966, 1034
FalI	AAGNNNNNCTT	2 cut(s)	1037, 1069
FaqI	GGGAC	2 cut(s)	410, 865
FatI	CATG	1 cut(s)	859
FbaI	TGATCA	1 cut(s)	102
FblI	GTMKAC	1 cut(s)	774
Fnu4HI	GCNGC	1 cut(s)	476
FokI	GGATG	2 cut(s)	347, 934
Fsp4HI	GCNGC	1 cut(s)	476
FspBI	CTAG	3 cut(s)	486, 611, 845
GlaI	GCGC	1 cut(s)	484
GluI	GCNGC	1 cut(s)	476
GsaI	CCCAGC	1 cut(s)	852
GsuI	CTGGAG	2 cut(s)	354, 491
HaeII	RGCGCY	1 cut(s)	486
HaeIII	GGCC	2 cut(s)	418, 1031
HapII	CCGG	1 cut(s)	394
HgaI	GACGC	1 cut(s)	572
HhaI	GCGC	1 cut(s)	485
Hin1II	CATG	1 cut(s)	863
Hin6I	GCGC	1 cut(s)	483
HinP1I	GCGC	1 cut(s)	483
HincII	GTYRAC	1 cut(s)	784
HindII	GTYRAC	1 cut(s)	784
HpaI	GTTAAC	1 cut(s)	784
HpaII	CCGG	1 cut(s)	394
Hpy166II	GTNNAC	2 cut(s)	775, 784
Hpy188I	TCNGA	9 cut(s)	54, 78, 102, 162, 306, 448, 933, 979, 1066
Hpy188III	TCNNGA	4 cut(s)	106, 217, 380, 790
Hpy8I	GTNNAC	2 cut(s)	775, 784
HpyCH4III	ACNGT	3 cut(s)	695, 779, 973
HpyCH4IV	ACGT	1 cut(s)	634
HpyCH4V	TGCA	5 cut(s)	156, 233, 338, 943, 1022
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 1028
HpyF3I	CTNAG	5 cut(s)	84, 447, 678, 884, 991
HpySE526I	ACGT	1 cut(s)	634
Hsp92II	CATG	1 cut(s)	863
HspAI	GCGC	1 cut(s)	483
Ksp22I	TGATCA	1 cut(s)	102
KspAI	GTTAAC	1 cut(s)	784
Kzo9I	GATC	4 cut(s)	97, 102, 629, 716
LguI	GCTCTTC	1 cut(s)	648
LmnI	GCTCC	3 cut(s)	472, 610, 736
Lsp1109I	GCAGC	1 cut(s)	487
LweI	GCATC	4 cut(s)	82, 325, 452, 796
MaeI	CTAG	3 cut(s)	486, 611, 845
MaeII	ACGT	1 cut(s)	634
MaeIII	GTNAC	3 cut(s)	598, 924, 967
MalI	GATC	4 cut(s)	99, 104, 631, 718
MbiI	CCGCTC	1 cut(s)	739
MboI	GATC	4 cut(s)	97, 102, 629, 716
MboII	GAAGA	6 cut(s)	179, 319, 551, 560, 635, 1057
MhlI	GDGCHC	2 cut(s)	9, 873
MluCI	AATT	6 cut(s)	140, 210, 436, 491, 619, 749
MmeI	TCCRAC	1 cut(s)	726
Mph1103I	ATGCAT	1 cut(s)	340
MseI	TTAA	8 cut(s)	258, 285, 327, 375, 722, 783, 824, 875
MslI	CAYNNNNRTG	1 cut(s)	864
MspI	CCGG	1 cut(s)	394
MspR9I	CCNGG	1 cut(s)	395
Mva1269I	GAATGC	1 cut(s)	226
MwoI	GCNNNNNNNGC	2 cut(s)	230, 1028
NciI	CCSGG	1 cut(s)	395
NdeII	GATC	4 cut(s)	97, 102, 629, 716
NheI	GCTAGC	1 cut(s)	844
NlaIII	CATG	1 cut(s)	863
NlaIV	GGNNCC	3 cut(s)	6, 398, 417
NmuCI	GTSAC	2 cut(s)	924, 967
NsiI	ATGCAT	1 cut(s)	340
PciSI	GCTCTTC	1 cut(s)	648
PctI	GAATGC	1 cut(s)	226
PflMI	CCANNNNNTGG	1 cut(s)	439
PfoI	TCCNGGA	1 cut(s)	393
PkrI	GCNGC	1 cut(s)	477
Ppu21I	YACGTR	1 cut(s)	635
PshBI	ATTAAT	1 cut(s)	824
PspFI	CCCAGC	1 cut(s)	848
PspN4I	GGNNCC	3 cut(s)	6, 398, 417
PspPI	GGNCC	3 cut(s)	397, 416, 1029
RsaI	GTAC	3 cut(s)	274, 667, 902
RsaNI	GTAC	3 cut(s)	273, 666, 901
RseI	CAYNNNNRTG	1 cut(s)	864
SapI	GCTCTTC	1 cut(s)	648
SaqAI	TTAA	8 cut(s)	258, 285, 327, 375, 722, 783, 824, 875
SatI	GCNGC	1 cut(s)	476
Sau3AI	GATC	4 cut(s)	97, 102, 629, 716
Sau96I	GGNCC	3 cut(s)	397, 416, 1029
ScaI	AGTACT	1 cut(s)	667
ScrFI	CCNGG	1 cut(s)	395
SduI	GDGCHC	2 cut(s)	9, 873
SfaNI	GCATC	4 cut(s)	82, 325, 452, 796
SfcI	CTRYAG	2 cut(s)	534, 771
SinI	GGWCC	1 cut(s)	397
SmiMI	CAYNNNNRTG	1 cut(s)	864
Sse9I	AATT	6 cut(s)	140, 210, 436, 491, 619, 749
SsiI	CCGC	3 cut(s)	332, 400, 739
SspMI	CTAG	3 cut(s)	486, 611, 845
StyD4I	CCNGG	1 cut(s)	393
TaaI	ACNGT	3 cut(s)	695, 779, 973
TaiI	ACGT	1 cut(s)	637
TaqI	TCGA	3 cut(s)	30, 144, 555
TasI	AATT	6 cut(s)	140, 210, 436, 491, 619, 749
TatI	WGTACW	1 cut(s)	665
Tru1I	TTAA	8 cut(s)	258, 285, 327, 375, 722, 783, 824, 875
Tru9I	TTAA	8 cut(s)	258, 285, 327, 375, 722, 783, 824, 875
TscAI	CASTG	1 cut(s)	474
TseFI	GTSAC	2 cut(s)	924, 967
TseI	GCWGC	1 cut(s)	475
Tsp45I	GTSAC	2 cut(s)	924, 967
TspDTI	ATGAA	2 cut(s)	179, 445
TspRI	CASTG	1 cut(s)	474
Van91I	CCANNNNNTGG	1 cut(s)	439
VpaK11BI	GGWCC	1 cut(s)	397
VspI	ATTAAT	1 cut(s)	824
XapI	RAATTY	3 cut(s)	140, 436, 619
XmiI	GTMKAC	1 cut(s)	774
XspI	CTAG	3 cut(s)	486, 611, 845
ZrmI	AGTACT	1 cut(s)	667
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.