Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004824

Physical Location & Seq

Genomic Coordinates Reverse (-)

15904841 .. 15907565

Gene Structure 2725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G141200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGTTGCCCAATCAAAGCTATTCTCGTATTGACACTTCAGAGCTAAAATTTACAATTGTTCAAAAAATTGGGCATCAGAGAGCTGAGAAATACTTTGATCTGACCAGAAGATTGTTTGGTTTGAAGATTAGCAAGTGTGATTTCAACAAATTCTGCATTCGGACTATTGGGAGGGAAAATGTCCATCTTCATAACAAGCTTATTAGGTCAATTATCAAGAATGCTTGCCTTGCAAGAACTCCACCACTGACAGGTATTAGGAAAACGGGAGGTGCCCTCAATGCTAAAGTTGTAATTGGCTATCAGAAGAGTTGTGCTCAACCGCTTTACGGGGATGCATTTCCTCAATGCCCTCGCAAGGGCCGGTCTGCTGTTAATCGAGATCGTAAGTTTCGGGACCGGCCAAGTCCTTTGGGGCCAAATGGAAAGCCCCAAAATATTGCATATGAGGAATTGATTTCCAAAGCACATGAGCAGCAAAGTCCTACTGAGTTGCTTTCTCTTGACAGCAGGCCTCCCATTGAAGTTGCCTCTGAGGATGGAGAAGAAGTTGAACAGGTTGCAGGGAGCCCAGCTATTCAAAGTAGAAGCCCAGTAACAGCTCCCTTTGGTATATCCATGCATTTGGTTGGATCACGTAAAGCTTTTCCTAATGTATCAGTGTGTGGTGGTACATACCACCGTGAAACCTGTCAAAACTGTGGTGAGCTACCTGATACAAAATCGTTAAGAAGTCGTTTGGAGCGTAAGTTGGAGACGGAGGGTATTGGTGTTTCTGTAGACTGTGTTAACCTCTTGAACAATGGGTTAGATACTTTCCTGAAGAGATTACTGGAACCTTGTATTCGATTAGCTGGGACAAGGCATGGGGATGAGCAATTAAAACAACTAAACAGTCTGTATATATGTGGTTCAAATGGGACATTGCGTGGGGGACATATGCAAAGAGAAACAAAATCTACTTATGCATCCATGTTAGATTTTTGTGCAGCAGTGGAGTTAAATCCGCAAATACTTGGTGAAAATTGGCCCATACAGCTTGAGAAGATTGTCGTACGTGCTTCTGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAGA-Tad1

Protein Analysis

358

Amino Acids

39.71

Weight (kDa)

9.17

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33890 AT4G33890
fragaria_vesca	FvH4_2g03960 FvH4_2g03962
malus_domestica	MD05G1096600.v1.1 MD10G1103000.v1.1
prunus_persica	Prupe.8G141100_v2.0.a1 Prupe.8G141200_v2.0.a1 Prupe.8G141200_v2.0.a1
pyrus_communis	pycom05g09550 pycom10g08870
rosa_chinensis	RchiOBHm_Chr6g0253011 RchiOBHm_Chr6g0253021
rosa_laevigata	RLG00000015043 RLG00000015044
rosa_multiflora	Rmu_sc0002560.1_g000010 Rmu_sc0002560.1_g000011
rosa_roxburghii	Rroxscaffold_7G00212190 Rroxscaffold_7G00212200
rosa_rugosa	Rorug05G0542800 Rorug05G0542900
rosa_samantha	Rh6AG056700 Rh6AG056800 Rh6BG051100 Rh6BG051300 Rh6CG049100 Rh6CG049200 Rh6DG044800 Rh6DG044900
rosa_wichuraiana	Rw6G005180 Rw6G005190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	272
AccI	GTMKAC	1 cut(s)	780
AciI	CCGC	2 cut(s)	323, 1007
AclWI	GGATC	1 cut(s)	640
AcoI	YGGCCR	1 cut(s)	401
AcsI	RAATTY	2 cut(s)	47, 149
AcuI	CTGAAG	2 cut(s)	21, 842
AfaI	GTAC	2 cut(s)	673, 1056
AfiI	CCNNNNNNNGG	4 cut(s)	251, 329, 358, 359
AgsI	TTSAA	8 cut(s)	62, 124, 145, 524, 554, 581, 799, 915
Alw21I	GWGCWC	1 cut(s)	319
Alw26I	GTCTC	1 cut(s)	749
AlwI	GGATC	1 cut(s)	640
AoxI	GGCC	5 cut(s)	361, 401, 416, 512, 1028
ApeKI	GCWGC	2 cut(s)	475, 989
ApoI	RAATTY	2 cut(s)	47, 149
AspS9I	GGNCC	4 cut(s)	361, 397, 416, 1029
AsuHPI	GGTGA	2 cut(s)	716, 1031
AvaII	GGWCC	1 cut(s)	397
BaeGI	GKGCMC	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	572
BarI	GAAGNNNNNNTAC	2 cut(s)	19, 51
Bbv12I	GWGCWC	1 cut(s)	319
BbvI	GCAGC	2 cut(s)	487, 1001
BccI	CCATC	2 cut(s)	192, 533
BcoDI	GTCTC	1 cut(s)	749
BfmI	CTRYAG	1 cut(s)	777
BisI	GCNGC	2 cut(s)	476, 990
BlsI	GCNGC	2 cut(s)	477, 991
Bme18I	GGWCC	1 cut(s)	397
BmgT120I	GGNCC	4 cut(s)	361, 397, 416, 1029
BmiI	GGNNCC	5 cut(s)	274, 398, 417, 569, 837
BmrI	ACTGGG	1 cut(s)	587
BmsI	GCATC	3 cut(s)	82, 325, 977
BmuI	ACTGGG	1 cut(s)	587
BplI	GAGNNNNNCTC	4 cut(s)	261, 293, 301, 333
BpuEI	CTTGAG	1 cut(s)	1061
BsaAI	YACGTR	2 cut(s)	638, 1058
BsaXI	ACNNNNNCTCC	4 cut(s)	534, 564, 734, 764
Bsc4I	CCNNNNNNNGG	4 cut(s)	251, 329, 358, 359
Bse118I	RCCGGY	2 cut(s)	363, 399
Bse1I	ACTGG	2 cut(s)	593, 837
Bse3DI	GCAATG	1 cut(s)	923
BseGI	GGATG	4 cut(s)	340, 544, 877, 968
BseLI	CCNNNNNNNGG	4 cut(s)	251, 329, 358, 359
BseMI	GCAATG	1 cut(s)	923
BseMII	CTCAG	3 cut(s)	75, 480, 525
BseNI	ACTGG	2 cut(s)	593, 837
BseSI	GKGCMC	1 cut(s)	277
BseXI	GCAGC	2 cut(s)	487, 1001
BseYI	CCCAGC	2 cut(s)	571, 854
BsgI	GTGCAG	1 cut(s)	1008
BshFI	GGCC	5 cut(s)	363, 403, 418, 514, 1030
BshNI	GGYRCC	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	319
BsiSI	CCGG	2 cut(s)	364, 400
BsiWI	CGTACG	1 cut(s)	1054
BslFI	GGGAC	4 cut(s)	410, 871, 934, 948
BslI	CCNNNNNNNGG	4 cut(s)	251, 329, 358, 359
BsmAI	GTCTC	1 cut(s)	749
BsmBI	CGTCTC	1 cut(s)	749
BsmFI	GGGAC	4 cut(s)	410, 871, 934, 948
BsmI	GAATGC	2 cut(s)	156, 226
BsnI	GGCC	5 cut(s)	363, 403, 418, 514, 1030
Bsp1286I	GDGCHC	3 cut(s)	277, 319, 572
Bsp143I	GATC	3 cut(s)	97, 382, 632
BspACI	CCGC	2 cut(s)	323, 1007
BspANI	GGCC	5 cut(s)	363, 403, 418, 514, 1030
BspCNI	CTCAG	3 cut(s)	76, 481, 526
BspLI	GGNNCC	5 cut(s)	274, 398, 417, 569, 837
BspPI	GGATC	1 cut(s)	640
BspT107I	GGYRCC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	923
BsrFI	RCCGGY	2 cut(s)	363, 399
BsrI	ACTGG	2 cut(s)	593, 837
BssAI	RCCGGY	2 cut(s)	363, 399
BssMI	GATC	3 cut(s)	97, 382, 632
Bst4CI	ACNGT	4 cut(s)	683, 701, 785, 896
Bst6I	CTCTTC	3 cut(s)	302, 818, 1062
BstBAI	YACGTR	2 cut(s)	638, 1058
BstC8I	GCNNGC	2 cut(s)	226, 512
BstDEI	CTNAG	3 cut(s)	84, 489, 534
BstF5I	GGATG	4 cut(s)	340, 544, 877, 968
BstKTI	GATC	3 cut(s)	100, 385, 635
BstMAI	GTCTC	1 cut(s)	749
BstMBI	GATC	3 cut(s)	97, 382, 632
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 281, 1036
BstSFI	CTRYAG	1 cut(s)	777
BstSLI	GKGCMC	1 cut(s)	277
BstV1I	GCAGC	2 cut(s)	487, 1001
BstXI	CCANNNNNNTGG	1 cut(s)	625
BsuRI	GGCC	5 cut(s)	363, 403, 418, 514, 1030
BtsCI	GGATG	4 cut(s)	340, 544, 877, 968
BtsI	GCAGTG	1 cut(s)	999
BtsIMutI	CAGTG	3 cut(s)	245, 666, 999
Cac8I	GCNNGC	2 cut(s)	226, 512
Cfr10I	RCCGGY	2 cut(s)	363, 399
Cfr13I	GGNCC	4 cut(s)	361, 397, 416, 1029
Csp6I	GTAC	2 cut(s)	672, 1055
CviAII	CATG	4 cut(s)	470, 619, 866, 973
CviQI	GTAC	2 cut(s)	672, 1055
DdeI	CTNAG	3 cut(s)	84, 489, 534
DpnI	GATC	3 cut(s)	99, 384, 634
DpnII	GATC	3 cut(s)	97, 382, 632
EaeI	YGGCCR	1 cut(s)	401
Eam1104I	CTCTTC	3 cut(s)	302, 818, 1062
EarI	CTCTTC	3 cut(s)	302, 818, 1062
Eco147I	AGGCCT	1 cut(s)	514
Eco24I	GRGCYC	1 cut(s)	572
Eco47I	GGWCC	1 cut(s)	397
Eco57I	CTGAAG	2 cut(s)	21, 842
EcoT22I	ATGCAT	3 cut(s)	340, 624, 970
EcoT38I	GRGCYC	1 cut(s)	572
Esp3I	CGTCTC	1 cut(s)	749
FaeI	CATG	4 cut(s)	473, 622, 869, 976
FaqI	GGGAC	4 cut(s)	410, 871, 934, 948
FatI	CATG	4 cut(s)	469, 618, 865, 972
FauNDI	CATATG	2 cut(s)	445, 939
FblI	GTMKAC	1 cut(s)	780
Fnu4HI	GCNGC	2 cut(s)	476, 990
FokI	GGATG	4 cut(s)	347, 551, 884, 955
FriOI	GRGCYC	1 cut(s)	572
Fsp4HI	GCNGC	2 cut(s)	476, 990
GluI	GCNGC	2 cut(s)	476, 990
GsaI	CCCAGC	2 cut(s)	575, 858
HaeIII	GGCC	5 cut(s)	363, 403, 418, 514, 1030
HapII	CCGG	2 cut(s)	364, 400
Hin1II	CATG	4 cut(s)	473, 622, 869, 976
HincII	GTYRAC	1 cut(s)	790
HindII	GTYRAC	1 cut(s)	790
HindIII	AAGCTT	2 cut(s)	197, 642
HpaI	GTTAAC	1 cut(s)	790
HpaII	CCGG	2 cut(s)	364, 400
HphI	GGTGA	2 cut(s)	716, 1031
Hpy166II	GTNNAC	2 cut(s)	781, 790
Hpy188I	TCNGA	7 cut(s)	40, 78, 102, 162, 306, 535, 1066
Hpy188III	TCNNGA	6 cut(s)	217, 380, 395, 503, 796, 820
Hpy8I	GTNNAC	2 cut(s)	781, 790
HpyCH4III	ACNGT	4 cut(s)	683, 701, 785, 896
HpyCH4IV	ACGT	2 cut(s)	637, 1057
HpyCH4V	TGCA	9 cut(s)	156, 233, 338, 443, 563, 622, 943, 968, 989
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 281, 1036
HpyF3I	CTNAG	3 cut(s)	84, 489, 534
HpySE526I	ACGT	2 cut(s)	637, 1057
Hsp92II	CATG	4 cut(s)	473, 622, 869, 976
KspAI	GTTAAC	1 cut(s)	790
Kzo9I	GATC	3 cut(s)	97, 382, 632
LmnI	GCTCC	3 cut(s)	567, 607, 742
Lsp1109I	GCAGC	2 cut(s)	487, 1001
LweI	GCATC	3 cut(s)	82, 325, 977
MaeII	ACGT	2 cut(s)	637, 1057
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	3 cut(s)	99, 384, 634
MboI	GATC	3 cut(s)	97, 382, 632
MboII	GAAGA	7 cut(s)	120, 136, 179, 319, 557, 835, 1057
MfeI	CAATTG	1 cut(s)	54
MhlI	GDGCHC	3 cut(s)	277, 319, 572
MluCI	AATT	9 cut(s)	47, 54, 66, 149, 210, 294, 452, 878, 1024
MmeI	TCCRAC	2 cut(s)	610, 732
Mph1103I	ATGCAT	3 cut(s)	340, 624, 970
MseI	TTAA	5 cut(s)	375, 728, 789, 881, 1001
MslI	CAYNNNNRTG	1 cut(s)	870
MspI	CCGG	2 cut(s)	364, 400
MunI	CAATTG	1 cut(s)	54
Mva1269I	GAATGC	2 cut(s)	156, 226
MwoI	GCNNNNNNNGC	3 cut(s)	230, 281, 1036
NdeI	CATATG	2 cut(s)	445, 939
NdeII	GATC	3 cut(s)	97, 382, 632
NlaIII	CATG	4 cut(s)	473, 622, 869, 976
NlaIV	GGNNCC	5 cut(s)	274, 398, 417, 569, 837
NsiI	ATGCAT	3 cut(s)	340, 624, 970
PceI	AGGCCT	1 cut(s)	514
PcsI	WCGNNNNNNNCGW	1 cut(s)	742
PctI	GAATGC	2 cut(s)	156, 226
Pfl23II	CGTACG	1 cut(s)	1054
PkrI	GCNGC	2 cut(s)	477, 991
Ppu21I	YACGTR	2 cut(s)	638, 1058
PspFI	CCCAGC	2 cut(s)	571, 854
PspLI	CGTACG	1 cut(s)	1054
PspN4I	GGNNCC	5 cut(s)	274, 398, 417, 569, 837
PspPI	GGNCC	4 cut(s)	361, 397, 416, 1029
RsaI	GTAC	2 cut(s)	673, 1056
RsaNI	GTAC	2 cut(s)	672, 1055
RseI	CAYNNNNRTG	1 cut(s)	870
SaqAI	TTAA	5 cut(s)	375, 728, 789, 881, 1001
SatI	GCNGC	2 cut(s)	476, 990
Sau3AI	GATC	3 cut(s)	97, 382, 632
Sau96I	GGNCC	4 cut(s)	361, 397, 416, 1029
SduI	GDGCHC	3 cut(s)	277, 319, 572
SfaNI	GCATC	3 cut(s)	82, 325, 977
SfcI	CTRYAG	1 cut(s)	777
SinI	GGWCC	1 cut(s)	397
SmiMI	CAYNNNNRTG	1 cut(s)	870
SmlI	CTYRAG	1 cut(s)	1040
SmoI	CTYRAG	1 cut(s)	1040
Sse9I	AATT	9 cut(s)	47, 54, 66, 149, 210, 294, 452, 878, 1024
SseBI	AGGCCT	1 cut(s)	514
SsiI	CCGC	2 cut(s)	323, 1007
SspI	AATATT	1 cut(s)	439
StuI	AGGCCT	1 cut(s)	514
TaaI	ACNGT	4 cut(s)	683, 701, 785, 896
TaiI	ACGT	2 cut(s)	640, 1060
TaqI	TCGA	2 cut(s)	379, 847
TasI	AATT	9 cut(s)	47, 54, 66, 149, 210, 294, 452, 878, 1024
Tru1I	TTAA	5 cut(s)	375, 728, 789, 881, 1001
Tru9I	TTAA	5 cut(s)	375, 728, 789, 881, 1001
TscAI	CASTG	3 cut(s)	252, 666, 999
TseI	GCWGC	2 cut(s)	475, 989
TspDTI	ATGAA	1 cut(s)	179
TspGWI	ACGGA	1 cut(s)	773
TspRI	CASTG	3 cut(s)	252, 666, 999
VpaK11BI	GGWCC	1 cut(s)	397
XapI	RAATTY	2 cut(s)	47, 149
XmiI	GTMKAC	1 cut(s)	780
Zsp2I	ATGCAT	3 cut(s)	340, 624, 970

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.