Rw6G005180

Transcriptional regulator of RNA polII, SAGA, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0004824
Physical Location & Seq
Reverse (-)
8404224 .. 8405285
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G005180.1

Sequence Viewer

Length: 1062 bp
ATGATGCCGAATCAAAGCTATTCTCGGATCGACACTTTGGAGCTGAAGGATCTGATTATGCAGAAGATTGGGCATCAGAGAGCTGAGAAGTACTTTGATATGATCAGGAGATTGTTTAGTTCCAAGATTAGCAAGTGCGAATTCGACAAGTTTTGCAATCGGACTATTGGGAGGGAAAATATCCATCTTCATAACCGGCTTATAAAGTCGATTATCAAGAATGCCTGCCTTGCAAAAGCTCCACCCTTGAGAGGAGATAGGAAAGCGGGAAGTACCCTTAATGCTAAAGTTGAAAATGGGTATCCTGGGAGCTGTCTTCAATCGATTTATGGGGATGCATTTCCTAAATCCCCTCGCAAGGTCCGCTCTCCACTTAATCGAGACCACCGAAAGTTTCGGGATCGTCCAATTCCTTTGGTGCCAAATGGAAAGCCCCAAAATATGGCTTCCGAAGAACCAAGTTCCAAAGCACAAGAGCAGCATGAATTGCTTTCTCTTGGCAGCAGGCCTCCAGTTGAAGTTGCATCAGTGGAAGATGGAGAAGAGGTTGAACAGGATGCAGGAAGTCCGGGTATTCAAAGTCGAAGTCCTGTAACAGCTCCTCTTGGTATATCTATGAATTTGGGCGGATCACGCAAATCTGTTCATAATGTATCAGTCTGTGGTGCATACCGCCCTGAGACCTGTCAAAGCAGTGGTGAGCTACCTGATACAAGATCATTAAGGAATCGTTTGCAGCAGAAGTTGGAGATGGAGGGTATGACTGTTTCTGTTGACTGTCTTAACCTCTTGAATAACGGATTAGATGCTTATCTGAAGAGGTTAATTGAACCTTGTATTCGGTTAGCTGGGAGTAGGCATGAAAAAGAGCATCCCAAACAACCAAATAGTCTGTACATACATGGTTCAAATGGGATGTCTGGTCAGGGAGATATGCAAAGGGAAGCAAAATGTGCTACCATGGTAGACTTTCGTGCAGCAATGGAGTTAAATCCCCAAATACTTGGTGAAGATTGGGCCACACAGCTTGAGAAGATTTCTTTGCGAGCTTCTGAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAGA-Tad1

Protein Analysis

353

Amino Acids

39.4

Weight (kDa)

8.98

Isoelectric Point (pI)

53.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAGA-Tad1 PF12767 5 - 282 4.1e-61 Transcriptional regulator of RNA polII, SAGA, subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 203
AccB1I GGYRCC 1 cut(s) 418
AccB7I CCANNNNNTGG 1 cut(s) 442
AccBSI CCGCTC 1 cut(s) 366
AccI GTMKAC 1 cut(s) 966
AciI CCGC 4 cut(s) 266, 364, 627, 673
AclWI GGATC 4 cut(s) 35, 57, 408, 637
AcsI RAATTY 2 cut(s) 140, 619
AcuI CTGAAG 2 cut(s) 65, 836
AfaI GTAC 3 cut(s) 92, 274, 896
AfiI CCNNNNNNNGG 3 cut(s) 251, 358, 442
AgsI TTSAA 8 cut(s) 293, 320, 518, 551, 578, 793, 830, 909
AjnI CCWGG 1 cut(s) 304
Alw26I GTCTC 2 cut(s) 375, 674
AlwI GGATC 4 cut(s) 35, 57, 408, 637
AoxI GGCC 2 cut(s) 506, 1017
ApeKI GCWGC 4 cut(s) 478, 501, 736, 977
ApoI RAATTY 2 cut(s) 140, 619
ArsI GACNNNNNNTTYG 4 cut(s) 571, 603, 902, 934
AspS9I GGNCC 2 cut(s) 361, 1017
AsuC2I CCSGG 1 cut(s) 570
AsuHPI GGTGA 2 cut(s) 710, 1019
AvaII GGWCC 1 cut(s) 361
BanI GGYRCC 1 cut(s) 418
BbsI GAAGAC 1 cut(s) 308
BbvI GCAGC 4 cut(s) 490, 513, 748, 989
BccI CCATC 3 cut(s) 192, 530, 745
BciT130I CCWGG 1 cut(s) 306
BciVI GTATCC 1 cut(s) 312
BclI TGATCA 1 cut(s) 102
BcnI CCSGG 1 cut(s) 570
BcoDI GTCTC 2 cut(s) 375, 674
BfuI GTATCC 1 cut(s) 312
BisI GCNGC 4 cut(s) 479, 502, 737, 978
BlsI GCNGC 4 cut(s) 480, 503, 738, 979
BmcAI AGTACT 1 cut(s) 92
Bme1390I CCNGG 2 cut(s) 306, 570
Bme18I GGWCC 1 cut(s) 361
BmgT120I GGNCC 2 cut(s) 361, 1017
BmiI GGNNCC 1 cut(s) 420
BmrFI CCNGG 2 cut(s) 306, 570
BmsI GCATC 6 cut(s) 82, 325, 533, 547, 796, 880
BpiI GAAGAC 1 cut(s) 308
BpmI CTGGAG 1 cut(s) 495
BpuEI CTTGAG 2 cut(s) 268, 1049
BpuMI CCSGG 1 cut(s) 570
Bsa29I ATCGAT 1 cut(s) 323
BsaBI GATNNNNATC 1 cut(s) 810
BsaI GGTCTC 2 cut(s) 375, 674
BsaJI CCNNGG 2 cut(s) 305, 960
BsaXI ACNNNNNCTCC 2 cut(s) 531, 561
Bsc4I CCNNNNNNNGG 3 cut(s) 251, 358, 442
Bse118I RCCGGY 1 cut(s) 195
Bse1I ACTGG 1 cut(s) 512
Bse3DI GCAATG 1 cut(s) 987
Bse8I GATNNNNATC 1 cut(s) 810
BseBI CCWGG 1 cut(s) 306
BseCI ATCGAT 1 cut(s) 323
BseDI CCNNGG 2 cut(s) 305, 960
BseGI GGATG 4 cut(s) 340, 562, 871, 921
BseJI GATNNNNATC 1 cut(s) 810
BseLI CCNNNNNNNGG 3 cut(s) 251, 358, 442
BseMI GCAATG 1 cut(s) 987
BseMII CTCAG 2 cut(s) 75, 669
BseNI ACTGG 1 cut(s) 512
BseRI GAGGAG 2 cut(s) 267, 591
BseXI GCAGC 4 cut(s) 490, 513, 748, 989
BseYI CCCAGC 1 cut(s) 848
BsgI GTGCAG 1 cut(s) 996
BshFI GGCC 2 cut(s) 508, 1019
BshNI GGYRCC 1 cut(s) 418
BshVI ATCGAT 1 cut(s) 323
BsiSI CCGG 2 cut(s) 196, 569
BslI CCNNNNNNNGG 3 cut(s) 251, 358, 442
BsmAI GTCTC 2 cut(s) 375, 674
BsmI GAATGC 1 cut(s) 226
BsnI GGCC 2 cut(s) 508, 1019
Bso31I GGTCTC 2 cut(s) 375, 674
Bsp1407I TGTACA 1 cut(s) 894
Bsp143I GATC 6 cut(s) 27, 49, 102, 400, 629, 716
Bsp19I CCATGG 1 cut(s) 960
BspACI CCGC 4 cut(s) 266, 364, 627, 673
BspANI GGCC 2 cut(s) 508, 1019
BspCNI CTCAG 2 cut(s) 76, 670
BspDI ATCGAT 1 cut(s) 323
BspLI GGNNCC 1 cut(s) 420
BspPI GGATC 4 cut(s) 35, 57, 408, 637
BspT107I GGYRCC 1 cut(s) 418
BspTNI GGTCTC 2 cut(s) 375, 674
BsrBI CCGCTC 1 cut(s) 366
BsrDI GCAATG 1 cut(s) 987
BsrFI RCCGGY 1 cut(s) 195
BsrGI TGTACA 1 cut(s) 894
BsrI ACTGG 1 cut(s) 512
BssAI RCCGGY 1 cut(s) 195
BssECI CCNNGG 2 cut(s) 305, 960
BssMI GATC 6 cut(s) 27, 49, 102, 400, 629, 716
BssT1I CCWWGG 1 cut(s) 960
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 2 cut(s) 766, 779
Bst6I CTCTTC 3 cut(s) 537, 812, 1050
BstAPI GCANNNNNTGC 2 cut(s) 487, 953
BstAUI TGTACA 1 cut(s) 894
BstC8I GCNNGC 3 cut(s) 226, 506, 1047
BstDEI CTNAG 2 cut(s) 84, 678
BstDSI CCRYGG 1 cut(s) 960
BstF5I GGATG 4 cut(s) 340, 562, 871, 921
BstKTI GATC 6 cut(s) 30, 52, 105, 403, 632, 719
BstMAI GTCTC 2 cut(s) 375, 674
BstMBI GATC 6 cut(s) 27, 49, 102, 400, 629, 716
BstMWI GCNNNNNNNGC 5 cut(s) 230, 363, 487, 633, 953
BstNI CCWGG 1 cut(s) 306
BstSCI CCNGG 2 cut(s) 304, 568
BstV1I GCAGC 4 cut(s) 490, 513, 748, 989
BstV2I GAAGAC 1 cut(s) 308
BstX2I RGATCY 1 cut(s) 49
BstXI CCANNNNNNTGG 1 cut(s) 1004
BstYI RGATCY 1 cut(s) 49
Bsu15I ATCGAT 1 cut(s) 323
BsuI GTATCC 1 cut(s) 312
BsuRI GGCC 2 cut(s) 508, 1019
BsuTUI ATCGAT 1 cut(s) 323
BtgI CCRYGG 1 cut(s) 960
BtsCI GGATG 4 cut(s) 340, 562, 871, 921
BtsI GCAGTG 1 cut(s) 700
BtsIMutI CAGTG 2 cut(s) 534, 700
Cac8I GCNNGC 3 cut(s) 226, 506, 1047
Cfr10I RCCGGY 1 cut(s) 195
Cfr13I GGNCC 2 cut(s) 361, 1017
ClaI ATCGAT 1 cut(s) 323
Csp6I GTAC 3 cut(s) 91, 273, 895
CspCI CAANNNNNGTGG 2 cut(s) 1009, 1044
CviAII CATG 4 cut(s) 482, 860, 902, 961
CviQI GTAC 3 cut(s) 91, 273, 895
DdeI CTNAG 2 cut(s) 84, 678
DpnI GATC 6 cut(s) 29, 51, 104, 402, 631, 718
DpnII GATC 6 cut(s) 27, 49, 102, 400, 629, 716
Eam1104I CTCTTC 3 cut(s) 537, 812, 1050
EarI CTCTTC 3 cut(s) 537, 812, 1050
EciI GGCGGA 1 cut(s) 642
Eco130I CCWWGG 1 cut(s) 960
Eco147I AGGCCT 1 cut(s) 508
Eco31I GGTCTC 2 cut(s) 375, 674
Eco47I GGWCC 1 cut(s) 361
Eco57I CTGAAG 2 cut(s) 65, 836
EcoRI GAATTC 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 960
EcoT22I ATGCAT 1 cut(s) 340
ErhI CCWWGG 1 cut(s) 960
FaeI CATG 4 cut(s) 485, 863, 905, 964
FatI CATG 4 cut(s) 481, 859, 901, 960
FauI CCCGC 1 cut(s) 259
FbaI TGATCA 1 cut(s) 102
FblI GTMKAC 1 cut(s) 966
Fnu4HI GCNGC 4 cut(s) 479, 502, 737, 978
FokI GGATG 4 cut(s) 347, 569, 858, 928
Fsp4HI GCNGC 4 cut(s) 479, 502, 737, 978
GluI GCNGC 4 cut(s) 479, 502, 737, 978
GsaI CCCAGC 1 cut(s) 852
GsuI CTGGAG 1 cut(s) 495
HaeIII GGCC 2 cut(s) 508, 1019
HapII CCGG 2 cut(s) 196, 569
Hin1II CATG 4 cut(s) 485, 863, 905, 964
HincII GTYRAC 1 cut(s) 775
HindII GTYRAC 1 cut(s) 775
HinfI GANTC 2 cut(s) 10, 727
HpaII CCGG 2 cut(s) 196, 569
HphI GGTGA 2 cut(s) 710, 1019
Hpy166II GTNNAC 2 cut(s) 775, 967
Hpy188I TCNGA 7 cut(s) 27, 54, 78, 162, 451, 816, 1054
Hpy188III TCNNGA 5 cut(s) 106, 217, 380, 398, 790
Hpy8I GTNNAC 2 cut(s) 775, 967
HpyAV CCTTC 1 cut(s) 40
HpyCH4III ACNGT 2 cut(s) 766, 779
HpyF10VI GCNNNNNNNGC 5 cut(s) 230, 363, 487, 633, 953
HpyF3I CTNAG 2 cut(s) 84, 678
Hsp92II CATG 4 cut(s) 485, 863, 905, 964
Ksp22I TGATCA 1 cut(s) 102
Kzo9I GATC 6 cut(s) 27, 49, 102, 400, 629, 716
LmnI GCTCC 4 cut(s) 40, 244, 309, 604
Lsp1109I GCAGC 4 cut(s) 490, 513, 748, 989
LweI GCATC 6 cut(s) 82, 325, 533, 547, 796, 880
MaeIII GTNAC 1 cut(s) 592
MalI GATC 6 cut(s) 29, 51, 104, 402, 631, 718
MbiI CCGCTC 1 cut(s) 366
MboI GATC 6 cut(s) 27, 49, 102, 400, 629, 716
MboII GAAGA 9 cut(s) 76, 179, 308, 464, 545, 554, 829, 1022, 1045
MflI RGATCY 1 cut(s) 49
MluCI AATT 5 cut(s) 140, 408, 485, 619, 825
MmeI TCCRAC 1 cut(s) 726
MnlI CCTC 9 cut(s) 165, 245, 363, 519, 538, 612, 748, 797, 813
Mph1103I ATGCAT 1 cut(s) 340
MseI TTAA 6 cut(s) 279, 375, 722, 783, 824, 989
MspI CCGG 2 cut(s) 196, 569
MspR9I CCNGG 2 cut(s) 306, 570
Mva1269I GAATGC 1 cut(s) 226
MvaI CCWGG 1 cut(s) 306
MwoI GCNNNNNNNGC 5 cut(s) 230, 363, 487, 633, 953
NciI CCSGG 1 cut(s) 570
NcoI CCATGG 1 cut(s) 960
NdeII GATC 6 cut(s) 27, 49, 102, 400, 629, 716
NlaIII CATG 4 cut(s) 485, 863, 905, 964
NlaIV GGNNCC 1 cut(s) 420
NsiI ATGCAT 1 cut(s) 340
PceI AGGCCT 1 cut(s) 508
PcsI WCGNNNNNNNCGW 1 cut(s) 385
PctI GAATGC 1 cut(s) 226
PfeI GAWTC 2 cut(s) 10, 727
PflMI CCANNNNNTGG 1 cut(s) 442
PkrI GCNGC 4 cut(s) 480, 503, 738, 979
PsiI TTATAA 1 cut(s) 203
Psp6I CCWGG 1 cut(s) 304
PspFI CCCAGC 1 cut(s) 848
PspGI CCWGG 1 cut(s) 304
PspN4I GGNNCC 1 cut(s) 420
PspPI GGNCC 2 cut(s) 361, 1017
PsuI RGATCY 1 cut(s) 49
RsaI GTAC 3 cut(s) 92, 274, 896
RsaNI GTAC 3 cut(s) 91, 273, 895
SaqAI TTAA 6 cut(s) 279, 375, 722, 783, 824, 989
SatI GCNGC 4 cut(s) 479, 502, 737, 978
Sau3AI GATC 6 cut(s) 27, 49, 102, 400, 629, 716
Sau96I GGNCC 2 cut(s) 361, 1017
ScaI AGTACT 1 cut(s) 92
ScrFI CCNGG 2 cut(s) 306, 570
SfaNI GCATC 6 cut(s) 82, 325, 533, 547, 796, 880
SinI GGWCC 1 cut(s) 361
SmlI CTYRAG 2 cut(s) 247, 1028
SmoI CTYRAG 2 cut(s) 247, 1028
Sse9I AATT 5 cut(s) 140, 408, 485, 619, 825
SseBI AGGCCT 1 cut(s) 508
SsiI CCGC 4 cut(s) 266, 364, 627, 673
StuI AGGCCT 1 cut(s) 508
StyD4I CCNGG 2 cut(s) 304, 568
StyI CCWWGG 1 cut(s) 960
TaaI ACNGT 2 cut(s) 766, 779
TaqI TCGA 6 cut(s) 30, 144, 209, 323, 379, 583
TasI AATT 5 cut(s) 140, 408, 485, 619, 825
TatI WGTACW 2 cut(s) 90, 894
TfiI GAWTC 2 cut(s) 10, 727
Tru1I TTAA 6 cut(s) 279, 375, 722, 783, 824, 989
Tru9I TTAA 6 cut(s) 279, 375, 722, 783, 824, 989
TscAI CASTG 2 cut(s) 534, 700
TseI GCWGC 4 cut(s) 478, 501, 736, 977
TspDTI ATGAA 5 cut(s) 179, 498, 632, 635, 876
TspGWI ACGGA 1 cut(s) 813
TspRI CASTG 2 cut(s) 534, 700
Van91I CCANNNNNTGG 1 cut(s) 442
VpaK11BI GGWCC 1 cut(s) 361
XapI RAATTY 2 cut(s) 140, 619
XmiI GTMKAC 1 cut(s) 966
ZrmI AGTACT 1 cut(s) 92
Zsp2I ATGCAT 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.