AT4G34450

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011365
Physical Location & Seq
Forward (+)
16470736 .. 16477021
6286 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G34450.1

Sequence Viewer

Length: 2661 bp
ATGGCGCAACCCCTCGTGAAGAAAGACGATGATCACGACGATGAGTTGGAGTATTCTCCATTCATGGGAATTGAGAAAGGAGCGGTTCTTCAAGAGGCTAGAGTCTTTAATGACCCTCAGGTTGATCCTAGACGATGCTCCCAGGTCATTACGAAGCTTCTTTATTTGCTTAACCAAGGGGAGTCATTCACCAAGGTTGAAGCAACGGAAGTTTTCTTTTCAGTTACAAAGCTTTTTCAATCAAAAGACACGGGTTTGAGGAGAATGGTCTACTTGATCATTAAGGAGTTATCTCCATCATCTGATGAGGTTATCATCGTAACAAGCTCTCTGATGAAGGATATGAATAGTAAAATTGATATGTATCGAGCAAATGCTATCCGTGTCCTCTGCCGGATAATAGACGGAACCCTTCTCACTCAGATTGAGCGATACTTGAAACAAGCCATTGTGGATAAGAATCCCGTTGTTTCAAGTGCAGCTTTAGTCAGTGGGCTTCACTTGCTCAAGACAAACCCAGAAATTGTTAAAAGATGGAGCAATGAAGTTCAAGAAGGTATTCAATCCAGATCAGCCCTTGTTCAGTTCCATGCCCTAGCTTTGCTCCATCAGATACGCCAAAATGATCGCTTGGCTGTTAGCAAATTGGTTGGTAGCTTGACCAGGGGATCTGTCCGCTCTCCCTTGGCTCAGTGTCTTTTGATACGTTACACCAGCCAGGTTATCCGTGACATGGCCAACCACGGTCAATCTGGAGAACGTCCGTTCTATGAATTTTTGGAGAGTTGCCTGCGCCATAAGGCAGAAATGGTGATCCTTGAGGCTGCCAGGGCAATTACTGAGCTTGATGGTGTGACAAGCCGAGAACTGACTCCAGCAATCACTGTTCTTCAGCTCTTTTTGAGTTCCCCCAGACCAGTGTTGAGATTTGCCGCTGTCCGGACTCTGAACAAGGTTGCAATGACTCATCCTATGGCTGTCACCAACTGCAACATTGATATGGAGAGTTTAATCTCTGATCAAAATAGAAGCATTGCTACACTCGCAATAACCACACTATTGAAAACAGGGAACGAATCAAGTGTAGAACGTTTGATGAAGCAGATAACTAATTTTATGTCAGATATTGCTGATGAGTTCAAAATTGTGGTCGTGGACGCAATAAGATCGTTGTGTGTGAAATTCCCACTGAAATACAGATCCTTGATGACCTTCTTAAGCAACATTCTTAGGGAAGAAGGTGGATTTGAGTATAAAAGAGCAATAGTAGATTCTATTGTGACCATTATCAGAGATATTCCGGATGCAAAGGAAAGTGGACTGCTTCATCTATGTGAATTCATTGAAGATTGTGAATTCACATATCTTTCAACACAGATCCTTCATTTTCTGGGAATTGAGGGGCCTAACACCTCAGATCCAAGCAAGTATATACGATATATATATAATCGTGTGCATCTAGAAAACGCCACTGTCCGGGCTGCTGCTGTTTCCACACTTGCAAAGTTTGGGTTTATGGTTGAATCCTTGAAGCCCCGGATTACTGTTCTATTGAAGCGTTGCATCTATGACAGTGATGATGAGGTCCGTGATAGGGCAACACTATATTTGAGTGTTCTTGGTGGTGATGGTACTGTTGACACTGATAAAGAGAGCAAGGATTTCCTATTTGGTTCCCTGGAGGTTCCTCTAGTCAACATGGAAACTAGTCTGAAGAATTATGAGCCCTCTGAAGAAGCTTTTGATATCAACTCCGTACCTAAGGAAGTTAAATCTCAGCCCCTTGCAGAGAAGAAAGCCCAGGGTAAAAAGCCCACTGGTCTTGGTGCACCACCAGCTGCACCTGCTTCTGGTTTTGATGGCTATGAAAGACTTCTCTCATCCATTCCAGAGTTTGCCGCCTTTGGAAAACTTTTCAAGTCTTCTTTACCTGTGGAGCTAACTGAAGCAGAAACAGAATACGCTGTCAATGTTGTTAAGCATATCTTTGACAGTCATGTGGTGTTTCAGTACAACTGCACTAACACAATACCAGAGCAGTTGTTGGAGAGGGTCAATGTCATTGTAGATGCTTCAGAAGCTGAGGAATTCAGTGAAGTAACTTCAAAGGCCCTAAACTCACTTCCTTACGATTCACCCGGTCAAGCCTTTGTGGTTTTTGAGAAGCCAGCTGGGGTCCCTGCTGTTGGAAAGTTCTCCAACACATTGACTTTCGTTGTTAAGGAGGTTGACCCAAGCACAGGTGAAGCAGAAGATGATGGAGTAGAAGATGAGTACCAGCTAGAGGATCTTGAGGTTGTAGCTGGAGATTACATGGTGAAAGTGGGTGTCTCCAATTTCAGGAATGCGTGGGAAAGCATGGATGAAGAAGATGAGCGTGTAGACGAATATGGCCTTGGCCAAAGAGAGAGTTTGGGAGAAGCTGTAAAGGCTGTCATGGATCTTCTTGGCATGCAGACTTGTGAGGGGACGGAGACAATTCCGCTCAATGCAAGGTCACACACGTGTCTATTGTCAGGTGTGTACATAGGCAACGTGAAAGTGTTAGTGAGGGCACAGTTTGGAATGGACAGCTCAAAGGACATTGCAATGAAGCTGACAGTTAGAGCTGAAGACGTTTCTGTCGCCGAGGCCATTCACGAGATTGTTGCCAGCGGCTAA

Protein Analysis

886

Amino Acids

98.49

Weight (kDa)

5.06

Isoelectric Point (pI)

37.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adaptin_N PF01602 27 - 540 1.6e-149 Adaptin N terminal region
Cnd1 PF12717 123 - 216 5.2e-06 non-SMC mitotic condensation complex subunit 1
COP-gamma_platf PF08752 622 - 766 1.9e-53 Coatomer gamma subunit appendage platform subdomain
Coatomer_g_Cpla PF16381 769 - 883 1.9e-36 Coatomer subunit gamma-1 C-terminal appendage platform
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011365)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34450
fragaria_vesca FvH4_2g08660 FvH4_2g08660 FvH4_2g08660
malus_domestica MD05G1067500.v1.1 MD10G1077400.v1.1
prunus_persica Prupe.8G098200_v2.0.a1
pyrus_communis pycom05g05860 pycom10g06040
rosa_chinensis RchiOBHm_Chr6g0264051
rosa_laevigata RLG00000014293
rosa_multiflora Rmu_sc0006339.1_g000005
rosa_roxburghii Rroxscaffold_176G00431390 Rroxscaffold_7G00203630
rosa_rugosa Rorug06G0007600
rosa_samantha Rh6AG128800 Rh6BG124900 Rh6CG123600 Rh6DG110600
rosa_wichuraiana Rw6G011130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1852
AasI GACNNNNNNGTC 1 cut(s) 2621
Acc36I ACCTGC 1 cut(s) 1852
AccBSI CCGCTC 3 cut(s) 83, 678, 2485
AccI GTMKAC 2 cut(s) 270, 2382
AccIII TCCGGA 2 cut(s) 939, 1300
AciI CCGC 6 cut(s) 83, 676, 933, 1899, 2483, 2655
AclI AACGTT 1 cut(s) 1090
AclWI GGATC 8 cut(s) 119, 676, 808, 1194, 1372, 1412, 2295, 2448
AcoI YGGCCR 2 cut(s) 735, 2398
AcsI RAATTY 5 cut(s) 773, 1181, 1337, 1355, 2087
AcuI CTGAAG 6 cut(s) 875, 1733, 1752, 1965, 2058, 2631
AcvI CACGTG 1 cut(s) 2505
AfaI GTAC 5 cut(s) 1633, 1758, 2012, 2276, 2525
AflII CTTAAG 1 cut(s) 1216
AflIII ACRYGT 2 cut(s) 2502, 2504
AhlI ACTAGT 1 cut(s) 1706
AjnI CCWGG 6 cut(s) 141, 662, 717, 827, 1677, 1800
AjuI GAANNNNNNNTTGG 2 cut(s) 2379, 2411
AleI CACNNNNGTG 1 cut(s) 2503
Alw21I GWGCWC 1 cut(s) 1831
Alw26I GTCTC 2 cut(s) 2335, 2468
Alw44I GTGCAC 1 cut(s) 1827
AlwI GGATC 8 cut(s) 119, 676, 808, 1194, 1372, 1412, 2295, 2448
AlwNI CAGNNNCTG 1 cut(s) 2081
Aor13HI TCCGGA 2 cut(s) 939, 1300
AoxI GGCC 6 cut(s) 735, 1403, 2109, 2392, 2398, 2631
ApaLI GTGCAC 1 cut(s) 1827
ApeKI GCWGC 5 cut(s) 479, 824, 1481, 1484, 1838
ApoI RAATTY 5 cut(s) 773, 1181, 1337, 1355, 2087
ArsI GACNNNNNNTTYG 2 cut(s) 1134, 1166
Asp700I GAANNNNTTC 2 cut(s) 558, 1872
AspLEI GCGC 2 cut(s) 7, 795
AspS9I GGNCC 4 cut(s) 1403, 1585, 2110, 2176
AsuC2I CCSGG 3 cut(s) 1478, 1537, 2139
AsuHPI GGTGA 7 cut(s) 181, 823, 973, 1637, 2127, 2255, 2329
AvaII GGWCC 2 cut(s) 1585, 2176
AxyI CCTNAGG 2 cut(s) 117, 1761
BaeGI GKGCMC 2 cut(s) 1831, 2557
BalI TGGCCA 2 cut(s) 737, 2400
BanII GRGCYC 1 cut(s) 1728
BarI GAAGNNNNNNTAC 2 cut(s) 1021, 1053
BauI CACGAG 2 cut(s) 14, 2639
BbrPI CACGTG 1 cut(s) 2505
BbsI GAAGAC 2 cut(s) 1914, 2619
Bbv12I GWGCWC 1 cut(s) 1831
BbvCI CCTCAGC 1 cut(s) 2082
BbvI GCAGC 5 cut(s) 491, 811, 1468, 1471, 1825
BccI CCATC 7 cut(s) 304, 528, 615, 842, 1622, 1853, 2252
BcgI CGANNNNNNTGC 3 cut(s) 1149, 1183, 2630
BciT130I CCWGG 6 cut(s) 143, 664, 719, 829, 1679, 1802
BclI TGATCA 3 cut(s) 31, 276, 1018
BcnI CCSGG 3 cut(s) 1478, 1537, 2139
BcoDI GTCTC 2 cut(s) 2335, 2468
BcuI ACTAGT 1 cut(s) 1706
BfaI CTAG 7 cut(s) 99, 129, 596, 1460, 1691, 1707, 2282
BfrI CTTAAG 1 cut(s) 1216
BfuAI ACCTGC 1 cut(s) 1852
BisI GCNGC 8 cut(s) 480, 825, 933, 1482, 1485, 1839, 1899, 2656
BlsI GCNGC 8 cut(s) 481, 826, 934, 1483, 1486, 1840, 1900, 2657
Bme1390I CCNGG 9 cut(s) 143, 664, 719, 829, 1478, 1537, 1679, 1802, 2139
Bme18I GGWCC 2 cut(s) 1585, 2176
BmgT120I GGNCC 4 cut(s) 1403, 1585, 2110, 2176
BmiI GGNNCC 6 cut(s) 409, 1404, 1675, 1686, 2177, 2178
BmrFI CCNGG 9 cut(s) 143, 664, 719, 829, 1478, 1537, 1679, 1802, 2139
BmsI GCATC 5 cut(s) 125, 1294, 1465, 1572, 2059
BpiI GAAGAC 2 cut(s) 1914, 2619
BpmI CTGGAG 4 cut(s) 774, 858, 1700, 2325
Bpu10I CCTNAGC 1 cut(s) 2082
BpuEI CTTGAG 3 cut(s) 491, 839, 2312
BpuMI CCSGG 3 cut(s) 1478, 1537, 2139
BsaAI YACGTR 1 cut(s) 2505
BsaBI GATNNNNATC 2 cut(s) 363, 459
BsaWI WCCGGW 2 cut(s) 939, 1300
BsaXI ACNNNNNCTCC 2 cut(s) 2409, 2439
Bse1I ACTGG 2 cut(s) 917, 1822
Bse21I CCTNAGG 2 cut(s) 117, 1761
Bse3DI GCAATG 5 cut(s) 547, 966, 1032, 2583, 2595
Bse8I GATNNNNATC 2 cut(s) 363, 459
BseAI TCCGGA 2 cut(s) 939, 1300
BseBI CCWGG 6 cut(s) 143, 664, 719, 829, 1679, 1802
BseGI GGATG 4 cut(s) 967, 1309, 1880, 2368
BseJI GATNNNNATC 2 cut(s) 363, 459
BseMI GCAATG 5 cut(s) 547, 966, 1032, 2583, 2595
BseMII CTCAG 7 cut(s) 131, 434, 704, 831, 1428, 1790, 2073
BseNI ACTGG 2 cut(s) 917, 1822
BseRI GAGGAG 1 cut(s) 274
BseSI GKGCMC 2 cut(s) 1831, 2557
BseXI GCAGC 5 cut(s) 491, 811, 1468, 1471, 1825
BseYI CCCAGC 1 cut(s) 2171
BsgI GTGCAG 3 cut(s) 498, 1824, 2002
BshFI GGCC 6 cut(s) 737, 1405, 2111, 2394, 2400, 2633
BsiHKAI GWGCWC 1 cut(s) 1831
BsiSI CCGG 6 cut(s) 394, 940, 1301, 1477, 1537, 2139
BslFI GGGAC 2 cut(s) 2162, 2482
BsmAI GTCTC 2 cut(s) 2335, 2468
BsmFI GGGAC 2 cut(s) 2162, 2482
BsmI GAATGC 1 cut(s) 2350
BsnI GGCC 6 cut(s) 737, 1405, 2111, 2394, 2400, 2633
Bsp1286I GDGCHC 3 cut(s) 1728, 1831, 2557
Bsp13I TCCGGA 2 cut(s) 939, 1300
Bsp1407I TGTACA 1 cut(s) 2523
BspACI CCGC 6 cut(s) 83, 676, 933, 1899, 2483, 2655
BspANI GGCC 6 cut(s) 737, 1405, 2111, 2394, 2400, 2633
BspCNI CTCAG 7 cut(s) 130, 433, 703, 832, 1427, 1789, 2074
BspEI TCCGGA 2 cut(s) 939, 1300
BspLI GGNNCC 6 cut(s) 409, 1404, 1675, 1686, 2177, 2178
BspMI ACCTGC 1 cut(s) 1852
BspPI GGATC 8 cut(s) 119, 676, 808, 1194, 1372, 1412, 2295, 2448
BspTI CTTAAG 1 cut(s) 1216
BsrBI CCGCTC 3 cut(s) 83, 678, 2485
BsrDI GCAATG 5 cut(s) 547, 966, 1032, 2583, 2595
BsrGI TGTACA 1 cut(s) 2523
BsrI ACTGG 2 cut(s) 917, 1822
BssSI CACGAG 2 cut(s) 14, 2639
BssT1I CCWWGG 4 cut(s) 175, 192, 684, 2395
Bst2BI CACGAG 2 cut(s) 14, 2639
Bst2UI CCWGG 6 cut(s) 143, 664, 719, 829, 1679, 1802
Bst4CI ACNGT 9 cut(s) 746, 886, 1474, 1546, 1574, 1636, 1994, 2559, 2602
BstAFI CTTAAG 1 cut(s) 1216
BstAUI TGTACA 1 cut(s) 2523
BstBAI YACGTR 1 cut(s) 2505
BstC8I GCNNGC 4 cut(s) 791, 2169, 2453, 2653
BstDEI CTNAG 9 cut(s) 117, 420, 690, 840, 1229, 1414, 1761, 1776, 2082
BstDSI CCRYGG 1 cut(s) 742
BstF5I GGATG 4 cut(s) 967, 1309, 1880, 2368
BstHHI GCGC 2 cut(s) 7, 795
BstMAI GTCTC 2 cut(s) 2335, 2468
BstMWI GCNNNNNNNGC 7 cut(s) 502, 830, 1043, 1835, 1844, 2078, 2429
BstNI CCWGG 6 cut(s) 143, 664, 719, 829, 1679, 1802
BstNSI RCATGY 1 cut(s) 2455
BstSCI CCNGG 9 cut(s) 141, 662, 717, 827, 1476, 1535, 1677, 1800, 2137
BstSLI GKGCMC 2 cut(s) 1831, 2557
BstV1I GCAGC 5 cut(s) 491, 811, 1468, 1471, 1825
BstV2I GAAGAC 2 cut(s) 1914, 2619
BstX2I RGATCY 6 cut(s) 668, 1199, 1377, 1417, 2287, 2440
BstYI RGATCY 6 cut(s) 668, 1199, 1377, 1417, 2287, 2440
Bsu36I CCTNAGG 2 cut(s) 117, 1761
BsuRI GGCC 6 cut(s) 737, 1405, 2111, 2394, 2400, 2633
BtgI CCRYGG 1 cut(s) 742
BtsCI GGATG 4 cut(s) 967, 1309, 1880, 2368
BveI ACCTGC 1 cut(s) 1852
Cac8I GCNNGC 4 cut(s) 791, 2169, 2453, 2653
CaiI CAGNNNCTG 1 cut(s) 2081
CfoI GCGC 2 cut(s) 7, 795
Cfr13I GGNCC 4 cut(s) 1403, 1585, 2110, 2176
CseI GACGC 1 cut(s) 1166
Csp6I GTAC 5 cut(s) 1632, 1757, 2011, 2275, 2524
CspCI CAANNNNNGTGG 2 cut(s) 1804, 1839
CviAII CATG 9 cut(s) 64, 590, 733, 1699, 1997, 2314, 2359, 2437, 2452
CviQI GTAC 5 cut(s) 1632, 1757, 2011, 2275, 2524
DdeI CTNAG 9 cut(s) 117, 420, 690, 840, 1229, 1414, 1761, 1776, 2082
DrdI GACNNNNNNGTC 1 cut(s) 2621
DseDI GACNNNNNNGTC 1 cut(s) 2621
EaeI YGGCCR 2 cut(s) 735, 2398
Eco130I CCWWGG 4 cut(s) 175, 192, 684, 2395
Eco24I GRGCYC 1 cut(s) 1728
Eco32I GATATC 1 cut(s) 1747
Eco47I GGWCC 2 cut(s) 1585, 2176
Eco57I CTGAAG 6 cut(s) 875, 1733, 1752, 1965, 2058, 2631
Eco72I CACGTG 1 cut(s) 2505
Eco81I CCTNAGG 2 cut(s) 117, 1761
EcoO109I RGGNCCY 3 cut(s) 1403, 2110, 2176
EcoRI GAATTC 3 cut(s) 1337, 1355, 2087
EcoRII CCWGG 6 cut(s) 141, 662, 717, 827, 1677, 1800
EcoRV GATATC 1 cut(s) 1747
EcoT14I CCWWGG 4 cut(s) 175, 192, 684, 2395
EcoT38I GRGCYC 1 cut(s) 1728
ErhI CCWWGG 4 cut(s) 175, 192, 684, 2395
FaeI CATG 9 cut(s) 67, 593, 736, 1702, 2000, 2317, 2362, 2440, 2455
FalI AAGNNNNNCTT 4 cut(s) 466, 498, 1970, 2002
FaqI GGGAC 2 cut(s) 2162, 2482
FatI CATG 9 cut(s) 63, 589, 732, 1698, 1996, 2313, 2358, 2436, 2451
FbaI TGATCA 3 cut(s) 31, 276, 1018
FblI GTMKAC 2 cut(s) 270, 2382
Fnu4HI GCNGC 8 cut(s) 480, 825, 933, 1482, 1485, 1839, 1899, 2656
FokI GGATG 4 cut(s) 954, 1316, 1867, 2375
FriOI GRGCYC 1 cut(s) 1728
Fsp4HI GCNGC 8 cut(s) 480, 825, 933, 1482, 1485, 1839, 1899, 2656
FspBI CTAG 7 cut(s) 99, 129, 596, 1460, 1691, 1707, 2282
GlaI GCGC 2 cut(s) 6, 794
GluI GCNGC 8 cut(s) 480, 825, 933, 1482, 1485, 1839, 1899, 2656
GsaI CCCAGC 1 cut(s) 2175
GsuI CTGGAG 4 cut(s) 774, 858, 1700, 2325
HaeIII GGCC 6 cut(s) 737, 1405, 2111, 2394, 2400, 2633
HapII CCGG 6 cut(s) 394, 940, 1301, 1477, 1537, 2139
HgaI GACGC 1 cut(s) 1166
HhaI GCGC 2 cut(s) 7, 795
Hin1II CATG 9 cut(s) 67, 593, 736, 1702, 2000, 2317, 2362, 2440, 2455
Hin6I GCGC 2 cut(s) 5, 793
HinP1I GCGC 2 cut(s) 5, 793
HincII GTYRAC 3 cut(s) 1639, 1696, 2230
HindII GTYRAC 3 cut(s) 1639, 1696, 2230
HindIII AAGCTT 3 cut(s) 155, 230, 1737
HpaII CCGG 6 cut(s) 394, 940, 1301, 1477, 1537, 2139
HphI GGTGA 7 cut(s) 181, 823, 973, 1637, 2127, 2255, 2329
Hpy166II GTNNAC 9 cut(s) 271, 1156, 1319, 1639, 1696, 1829, 2230, 2383, 2524
Hpy8I GTNNAC 9 cut(s) 271, 1156, 1319, 1639, 1696, 1829, 2230, 2383, 2524
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 6 cut(s) 331, 422, 548, 1222, 1232, 1391
HpyCH4III ACNGT 9 cut(s) 746, 886, 1474, 1546, 1574, 1636, 1994, 2559, 2602
HpyCH4IV ACGT 6 cut(s) 706, 760, 1090, 2504, 2535, 2616
HpyF10VI GCNNNNNNNGC 7 cut(s) 502, 830, 1043, 1835, 1844, 2078, 2429
HpyF3I CTNAG 9 cut(s) 117, 420, 690, 840, 1229, 1414, 1761, 1776, 2082
HpySE526I ACGT 6 cut(s) 706, 760, 1090, 2504, 2535, 2616
Hsp92II CATG 9 cut(s) 67, 593, 736, 1702, 2000, 2317, 2362, 2440, 2455
HspAI GCGC 2 cut(s) 5, 793
KflI GGGWCCC 1 cut(s) 2176
Kpn2I TCCGGA 2 cut(s) 939, 1300
Ksp22I TGATCA 3 cut(s) 31, 276, 1018
LmnI GCTCC 5 cut(s) 80, 143, 537, 609, 1936
Lsp1109I GCAGC 5 cut(s) 491, 811, 1468, 1471, 1825
LweI GCATC 5 cut(s) 125, 1294, 1465, 1572, 2059
MaeI CTAG 7 cut(s) 99, 129, 596, 1460, 1691, 1707, 2282
MaeII ACGT 6 cut(s) 706, 760, 1090, 2504, 2535, 2616
MaeIII GTNAC 9 cut(s) 223, 319, 707, 728, 853, 979, 1279, 2098, 2496
MbiI CCGCTC 3 cut(s) 83, 678, 2485
MflI RGATCY 6 cut(s) 668, 1199, 1377, 1417, 2287, 2440
MhlI GDGCHC 3 cut(s) 1728, 1831, 2557
MlsI TGGCCA 2 cut(s) 737, 2400
MluNI TGGCCA 2 cut(s) 737, 2400
MlyI GAGTC 5 cut(s) 111, 191, 865, 937, 958
MmeI TCCRAC 4 cut(s) 27, 2025, 2167, 2223
Mox20I TGGCCA 2 cut(s) 737, 2400
MroI TCCGGA 2 cut(s) 939, 1300
MroXI GAANNNNTTC 2 cut(s) 558, 1872
MscI TGGCCA 2 cut(s) 737, 2400
MseI TTAA 9 cut(s) 108, 171, 282, 528, 1010, 1217, 1770, 1977, 2220
MslI CAYNNNNRTG 5 cut(s) 39, 998, 1332, 2503, 2588
Msp20I TGGCCA 2 cut(s) 737, 2400
MspA1I CMGCKG 4 cut(s) 935, 1838, 2171, 2655
MspCI CTTAAG 1 cut(s) 1216
MspI CCGG 6 cut(s) 394, 940, 1301, 1477, 1537, 2139
MspR9I CCNGG 9 cut(s) 143, 664, 719, 829, 1478, 1537, 1679, 1802, 2139
Mva1269I GAATGC 1 cut(s) 2350
MvaI CCWGG 6 cut(s) 143, 664, 719, 829, 1679, 1802
MwoI GCNNNNNNNGC 7 cut(s) 502, 830, 1043, 1835, 1844, 2078, 2429
NciI CCSGG 3 cut(s) 1478, 1537, 2139
NlaIII CATG 9 cut(s) 67, 593, 736, 1702, 2000, 2317, 2362, 2440, 2455
NlaIV GGNNCC 6 cut(s) 409, 1404, 1675, 1686, 2177, 2178
NmeAIII GCCGAG 2 cut(s) 887, 2653
NmuCI GTSAC 5 cut(s) 728, 853, 979, 1279, 2496
NspI RCATGY 1 cut(s) 2455
OliI CACNNNNGTG 1 cut(s) 2503
PaeI GCATGC 1 cut(s) 2455
PaqCI CACCTGC 1 cut(s) 1852
PasI CCCWGGG 1 cut(s) 1801
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PctI GAATGC 1 cut(s) 2350
PdmI GAANNNNTTC 2 cut(s) 558, 1872
PfeI GAWTC 5 cut(s) 460, 1076, 1271, 1523, 2132
PkrI GCNGC 8 cut(s) 481, 826, 934, 1483, 1486, 1840, 1900, 2657
PleI GAGTC 5 cut(s) 110, 190, 865, 937, 958
PmaCI CACGTG 1 cut(s) 2505
PmlI CACGTG 1 cut(s) 2505
PpsI GAGTC 5 cut(s) 110, 190, 865, 937, 958
Ppu21I YACGTR 1 cut(s) 2505
PpuMI RGGWCCY 1 cut(s) 2176
Psp1406I AACGTT 1 cut(s) 1090
Psp5II RGGWCCY 1 cut(s) 2176
Psp6I CCWGG 6 cut(s) 141, 662, 717, 827, 1677, 1800
PspCI CACGTG 1 cut(s) 2505
PspFI CCCAGC 1 cut(s) 2171
PspGI CCWGG 6 cut(s) 141, 662, 717, 827, 1677, 1800
PspN4I GGNNCC 6 cut(s) 409, 1404, 1675, 1686, 2177, 2178
PspPI GGNCC 4 cut(s) 1403, 1585, 2110, 2176
PspPPI RGGWCCY 1 cut(s) 2176
PstNI CAGNNNCTG 1 cut(s) 2081
PsuI RGATCY 6 cut(s) 668, 1199, 1377, 1417, 2287, 2440
PvuII CAGCTG 2 cut(s) 1838, 2171
RsaI GTAC 5 cut(s) 1633, 1758, 2012, 2276, 2525
RsaNI GTAC 5 cut(s) 1632, 1757, 2011, 2275, 2524
RseI CAYNNNNRTG 5 cut(s) 39, 998, 1332, 2503, 2588
SaqAI TTAA 9 cut(s) 108, 171, 282, 528, 1010, 1217, 1770, 1977, 2220
SatI GCNGC 8 cut(s) 480, 825, 933, 1482, 1485, 1839, 1899, 2656
Sau96I GGNCC 4 cut(s) 1403, 1585, 2110, 2176
SchI GAGTC 5 cut(s) 111, 191, 865, 937, 958
ScrFI CCNGG 9 cut(s) 143, 664, 719, 829, 1478, 1537, 1679, 1802, 2139
SduI GDGCHC 3 cut(s) 1728, 1831, 2557
SfaNI GCATC 5 cut(s) 125, 1294, 1465, 1572, 2059
SinI GGWCC 2 cut(s) 1585, 2176
SmiMI CAYNNNNRTG 5 cut(s) 39, 998, 1332, 2503, 2588
SmlI CTYRAG 4 cut(s) 506, 818, 1216, 2291
SmoI CTYRAG 4 cut(s) 506, 818, 1216, 2291
SpeI ACTAGT 1 cut(s) 1706
SphI GCATGC 1 cut(s) 2455
SsiI CCGC 6 cut(s) 83, 676, 933, 1899, 2483, 2655
SspMI CTAG 7 cut(s) 99, 129, 596, 1460, 1691, 1707, 2282
StyD4I CCNGG 9 cut(s) 141, 662, 717, 827, 1476, 1535, 1677, 1800, 2137
StyI CCWWGG 4 cut(s) 175, 192, 684, 2395
TaaI ACNGT 9 cut(s) 746, 886, 1474, 1546, 1574, 1636, 1994, 2559, 2602
TaiI ACGT 6 cut(s) 709, 763, 1093, 2507, 2538, 2619
TaqI TCGA 1 cut(s) 367
TatI WGTACW 2 cut(s) 2010, 2523
TauI GCSGC 3 cut(s) 935, 1901, 2658
TfiI GAWTC 5 cut(s) 460, 1076, 1271, 1523, 2132
Tru1I TTAA 9 cut(s) 108, 171, 282, 528, 1010, 1217, 1770, 1977, 2220
Tru9I TTAA 9 cut(s) 108, 171, 282, 528, 1010, 1217, 1770, 1977, 2220
TseFI GTSAC 5 cut(s) 728, 853, 979, 1279, 2496
TseI GCWGC 5 cut(s) 479, 824, 1481, 1484, 1838
Tsp45I GTSAC 5 cut(s) 728, 853, 979, 1279, 2496
TspGWI ACGGA 8 cut(s) 221, 371, 420, 716, 753, 1577, 1744, 2486
Vha464I CTTAAG 1 cut(s) 1216
VneI GTGCAC 1 cut(s) 1827
VpaK11BI GGWCC 2 cut(s) 1585, 2176
XapI RAATTY 5 cut(s) 773, 1181, 1337, 1355, 2087
XbaI TCTAGA 1 cut(s) 1459
XceI RCATGY 1 cut(s) 2455
XcmI CCANNNNNNNNNTGG 1 cut(s) 749
XmiI GTMKAC 2 cut(s) 270, 2382
XmnI GAANNNNTTC 2 cut(s) 558, 1872
XspI CTAG 7 cut(s) 99, 129, 596, 1460, 1691, 1707, 2282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.