FvH4_2g08660

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
7587703 .. 7594531
6829 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g08660.t2

Sequence Viewer

Length: 2661 bp
ATGGCTCAGCCTCTTGTAAAGAAGGACGACGATCGCGACGATGAAGAGTACTCTCCATTTCTGGGGATTGAAAAGGGGGCTGTTCTTCAGGATGCTAGGGTCTTTAACGATCCTCAGCTAGACCCAAGAAGATGCTCTCAGGTTATCACAAAGCTTCTGTATCTACTGAACCAGGGTGAAACCTTCACAAAGGTTGAAGCTACAGAAGTTTTCTTTGCTGTGACCAAGCTCTTCCAATCAAGAGATATAGGATTGAGGAGAATGGTTTATCTGATGATAAAAGAGCTATCACCTTCTGCTGATGAGGTTATTATTGTCACAAGCTCCTTAATGAAGGATATGAATAGTAAAACTGATATGTATCGGGCCAATGCCATTCGTGTGCTTTGTCGGATTACGGATGGAACCCTTCTTACCCAGATTGAGAGGTATCTGAAACAAGCCATCGTTGATAAGAATCCAGTGGTTGCGAGTGCAGCTCTAGTTAGTGGCATTCATTTACTCCAGACCAACCCAGAGATTGTCAAAAGGTGGAGTAATGAGGTTCAGGAAGCTGTCCAGTCAAGGGCAGCCCTTGTACAGTTCCATGCACTGGCTTTACTTCATCAGATAAGACAAAATGACCGTCTTGCTGTTAGCAAGTTGGTTACCAGCTTGACAAGGGGCACTGTTCGATCTCCATTAGCTCAATGCCTGTTGATCCGATATACTAGCCAGGTAATCCGTGAGTCTGCTGGAAGTACACAAGCAGGCGATCGTCCTTTTTATGATTATCTTGAGGGTTGCCTGCGGCACAAAGCAGAGATGGTAATCTTTGAGGCTGCAAGGGCAATTACTGAGCTTCATGGTGTGACAAACAGAGAACTGACTCCGGCTATCACAGTTCTTCAGCTGTTTTTAAGTTCTTCAAAGCCAGTGTTAAGATTTGCTGCGGTTCGCACCCTAAACAAGGTGGCAATGACACATCCAATGGCTGTTACGAACTGCAACATTGATATGGAGAGTTTGATTTCTGACCAGAACAGAAGCATTGCCACACTTGCGATCACCACACTTCTGAAGACAGGAAATGAGTCAAGTGTGGATCGCTTGATGAAGCAAATAACAAACTTCATGTCAGATATTGCTGATGAGTTCAAAATTGTAGTTGTGGAAGCCATTAGATCACTGTGTTTGAAGTTTCCATTGAAGTATAGAGCTCTCATGAACTTCCTAAGCAACATTCTTCGAGAAGAGGGTGGGTTTGAGTACAAAAAGGCAATTGTTGACTCGATTGTGATTCTCATTAGAGATATCCCAGAAGCAAAAGAGAGTGGCTTGCTTCATCTCTGTGAATTTATTGAAGACTGTGAATTCACATACCTTTCTACTCAGATACTTCACTTTTTGGGGATTGAAGGGCCCAGAACCTCGGATCCAAGCAAATACATACGGTACATTTATAATCGAGTGCATCTTGAGAATGCCACTGTCCGGGCTAGTGCTGTAAGCACATTAGCCAAATTTGGTGCCATGGTTGATTCATTGAAGCCTCGAGTTTTTATTCTGTTAAGAAGATGCCTCTTCGACAGTGATGATGAGGTTCGTGATAGGGCAACACTCTATCTTAATACACTTGGAGGAGATGGTTCTGTTGTAGAGACTGACCAGGATGTAAAGGACTTTCTCTTTGGGTCTTTGGATGTCCCCCTTGTCAATCTTGAGACAAGTTTGAAGACTTATGAGGCTTCAGAGGAACCATTTGACATCAATTCTGTACCAAAGGAGATTAAGTCTCAGCCACTTGCTGAGAAAAAAGCCCAGAGTAAGAAGCCAACTGGTCTGGGTGCTCCTCCAAGTGGCCCTGCATCCACAGTCGATGCTTATGAGAGGATGCTCGCGTCTATTCCGGAGTTTTCAAACTTTGGGAGACTTTTCAAGTCCTCAGCACCTGTGGAGTTGACAGAGGCAGAAACCGAATATGCAGTTAACGTTGTCAAGCACATTTTCGATAGGCATGTTGTGTTCCAGTACAACTGCACCAACACCATTCCCGAGCAATTACTGGAAAATGTTATTGTTGCCGTTGATGCTTCTGAAGCAGAAGATTTTACTGAAGCGGGATCCAAGCCTCTCAGGTCTCTTCCTTACGATACACCTGGCCAGACCTTTTTGGCATTTGAGAAGCCAGAAGGTGTCCCTGCAGTTGGAAAGTTTTCAAACACTTTGAGGTTCATTGTGAAAGAGGTTGATCCAACCACTGGTGAGGCAGAGGAAGATGGTGTAGAAGATGAATACCAGCTGGAGGACCTTGATGTGGTTGCTGCTGATTATATTTTGAAGGAACAAGTACACAATTTCAGGCATGCATGGGAAAACATGGGCCCAGATTGTGAGCGTGTAGATGAATATGGCCTGGGCCAAAGGGAGAGCTTGAACGAAGCAGTCTCTACTGTCATTAGCCTCCTTGGAATGCAGCCCTGTGAGGGCACGGAGGTTATTCCGAGCAACTCAAGGTCCCACACGTGTTTATTGTCTGGTGTATACATAGGCAATGTAAAGGTCCTTGTGCGGTTGTCTTTTGGAATTGATAGTTCAAAGGAGGTTGCAATGAAGCTTGCGGTTAGATCTGAGGATGTGACTGTCAGTGATGCCATCCATGAGATTGTGGCCAGCGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

887

Amino Acids

98.75

Weight (kDa)

5.17

Isoelectric Point (pI)

37.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adaptin_N PF01602 26 - 539 1.1e-142 Adaptin N terminal region
Cnd1 PF12717 122 - 217 1.1e-06 non-SMC mitotic condensation complex subunit 1
COP-gamma_platf PF08752 621 - 685 9.2e-29 Coatomer gamma subunit appendage platform subdomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011365)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1443
AccB1I GGYRCC 1 cut(s) 1508
AccB7I CCANNNNNTGG 2 cut(s) 592, 2240
AccI GTMKAC 1 cut(s) 2523
AccII CGCG 2 cut(s) 36, 1880
AccIII TCCGGA 1 cut(s) 1888
AciI CCGC 6 cut(s) 790, 932, 2099, 2551, 2600, 2655
AclI AACGTT 1 cut(s) 1971
AclWI GGATC 8 cut(s) 104, 694, 1092, 1409, 1422, 2097, 2110, 2225
AcoI YGGCCR 2 cut(s) 2140, 2649
AcsI RAATTY 3 cut(s) 1334, 1352, 1502
AcuI CTGAAG 6 cut(s) 71, 872, 1079, 1713, 2097, 2115
AcvI CACGTG 1 cut(s) 2505
AfaI GTAC 8 cut(s) 50, 579, 742, 1250, 1436, 1758, 2012, 2331
AflIII ACRYGT 2 cut(s) 2502, 2504
AjnI CCWGG 5 cut(s) 171, 714, 1647, 2137, 2394
AloI GAACNNNNNNTCC 2 cut(s) 1399, 1431
Alw21I GWGCWC 2 cut(s) 1201, 1831
Alw26I GTCTC 6 cut(s) 1634, 1697, 1779, 1903, 2124, 2431
AlwI GGATC 8 cut(s) 104, 694, 1092, 1409, 1422, 2097, 2110, 2225
AlwNI CAGNNNCTG 1 cut(s) 1931
Ama87I CYCGRG 2 cut(s) 1533, 2033
Aor13HI TCCGGA 1 cut(s) 1888
AoxI GGCC 8 cut(s) 366, 1400, 1840, 2140, 2362, 2392, 2398, 2649
ApaI GGGCCC 2 cut(s) 1404, 2366
ApeKI GCWGC 6 cut(s) 476, 569, 821, 929, 2303, 2455
ApoI RAATTY 3 cut(s) 1334, 1352, 1502
ArsI GACNNNNNNTTYG 6 cut(s) 610, 642, 1100, 1132, 1652, 1684
Asp700I GAANNNNTTC 1 cut(s) 2194
AsuC2I CCSGG 1 cut(s) 1475
AsuHPI GGTGA 4 cut(s) 188, 282, 1039, 2255
AvaI CYCGRG 2 cut(s) 1533, 2033
AvaII GGWCC 3 cut(s) 2287, 2496, 2542
BaeGI GKGCMC 4 cut(s) 668, 1404, 2366, 2471
BalI TGGCCA 2 cut(s) 2142, 2651
BamHI GGATCC 2 cut(s) 1414, 2102
BanI GGYRCC 1 cut(s) 1508
BanII GRGCYC 3 cut(s) 1201, 1404, 2366
BbrPI CACGTG 1 cut(s) 2505
BbsI GAAGAC 3 cut(s) 1067, 1350, 1721
Bbv12I GWGCWC 2 cut(s) 1201, 1831
BbvCI CCTCAGC 2 cut(s) 114, 1924
BbvI GCAGC 6 cut(s) 488, 581, 808, 916, 2290, 2467
BccI CCATC 6 cut(s) 395, 452, 799, 1619, 2252, 2642
BceAI ACGGC 1 cut(s) 2048
BciT130I CCWGG 5 cut(s) 173, 716, 1649, 2139, 2396
BcnI CCSGG 1 cut(s) 1475
BcoDI GTCTC 6 cut(s) 1634, 1697, 1779, 1903, 2124, 2431
BfaI CTAG 6 cut(s) 96, 119, 482, 711, 1479, 2659
BfmI CTRYAG 2 cut(s) 201, 2181
BglII AGATCT 1 cut(s) 2606
BisI GCNGC 8 cut(s) 477, 570, 791, 822, 930, 2304, 2456, 2656
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 8 cut(s) 478, 571, 792, 823, 931, 2305, 2457, 2657
BmcAI AGTACT 1 cut(s) 50
Bme1390I CCNGG 6 cut(s) 173, 716, 1475, 1649, 2139, 2396
Bme18I GGWCC 3 cut(s) 2287, 2496, 2542
BmeT110I CYCGRG 2 cut(s) 1533, 2033
BmiI GGNNCC 8 cut(s) 406, 1402, 1416, 1510, 1737, 2104, 2364, 2498
BmrFI CCNGG 6 cut(s) 173, 716, 1475, 1649, 2139, 2396
BmsI GCATC 9 cut(s) 82, 122, 1462, 1547, 1849, 1856, 1863, 2059, 2620
BpiI GAAGAC 3 cut(s) 1067, 1350, 1721
BplI GAGNNNNNCTC 2 cut(s) 463, 495
BpmI CTGGAG 2 cut(s) 488, 2303
Bpu10I CCTNAGC 3 cut(s) 114, 1214, 1924
Bpu1102I GCTNAGC 1 cut(s) 6
BpuEI CTTGAG 4 cut(s) 797, 1478, 1721, 2476
BpuMI CCSGG 1 cut(s) 1475
BsaAI YACGTR 1 cut(s) 2505
BsaBI GATNNNNATC 3 cut(s) 360, 456, 809
BsaI GGTCTC 1 cut(s) 2124
BsaJI CCNNGG 5 cut(s) 172, 1410, 1512, 2395, 2446
BsaWI WCCGGW 1 cut(s) 1888
BsaXI ACNNNNNCTCC 2 cut(s) 1757, 1787
Bse1I ACTGG 8 cut(s) 461, 559, 597, 914, 1822, 2008, 2049, 2245
Bse3DI GCAATG 4 cut(s) 963, 1029, 2539, 2595
Bse8I GATNNNNATC 3 cut(s) 360, 456, 809
BseAI TCCGGA 1 cut(s) 1888
BseBI CCWGG 5 cut(s) 173, 716, 1649, 2139, 2396
BseDI CCNNGG 5 cut(s) 172, 1410, 1512, 2395, 2446
BseGI GGATG 9 cut(s) 97, 406, 964, 1657, 1687, 1847, 1878, 2620, 2634
BseJI GATNNNNATC 3 cut(s) 360, 456, 809
BseMI GCAATG 4 cut(s) 963, 1029, 2539, 2595
BseNI ACTGG 8 cut(s) 461, 559, 597, 914, 1822, 2008, 2049, 2245
BseRI GAGGAG 3 cut(s) 271, 1635, 1821
BseSI GKGCMC 4 cut(s) 668, 1404, 2366, 2471
BseXI GCAGC 6 cut(s) 488, 581, 808, 916, 2290, 2467
BsgI GTGCAG 2 cut(s) 495, 2002
Bsh1236I CGCG 2 cut(s) 36, 1880
Bsh1285I CGRYCG 2 cut(s) 34, 757
BshFI GGCC 8 cut(s) 368, 1402, 1842, 2142, 2364, 2394, 2400, 2651
BshNI GGYRCC 1 cut(s) 1508
BsiEI CGRYCG 2 cut(s) 34, 757
BsiHKAI GWGCWC 2 cut(s) 1201, 1831
BsiHKCI CYCGRG 2 cut(s) 1533, 2033
BsiSI CCGG 3 cut(s) 872, 1474, 1889
BslFI GGGAC 3 cut(s) 1670, 2162, 2482
BsmAI GTCTC 6 cut(s) 1634, 1697, 1779, 1903, 2124, 2431
BsmFI GGGAC 3 cut(s) 1670, 2162, 2482
BsmI GAATGC 3 cut(s) 492, 1468, 2457
BsnI GGCC 8 cut(s) 368, 1402, 1842, 2142, 2364, 2394, 2400, 2651
Bso31I GGTCTC 1 cut(s) 2124
BsoBI CYCGRG 2 cut(s) 1533, 2033
Bsp120I GGGCCC 2 cut(s) 1400, 2362
Bsp1286I GDGCHC 6 cut(s) 668, 1201, 1404, 1831, 2366, 2471
Bsp13I TCCGGA 1 cut(s) 1888
Bsp1407I TGTACA 1 cut(s) 577
Bsp1720I GCTNAGC 1 cut(s) 6
Bsp19I CCATGG 1 cut(s) 1512
Bsp68I TCGCGA 1 cut(s) 36
BspACI CCGC 6 cut(s) 790, 932, 2099, 2551, 2600, 2655
BspANI GGCC 8 cut(s) 368, 1402, 1842, 2142, 2364, 2394, 2400, 2651
BspEI TCCGGA 1 cut(s) 1888
BspFNI CGCG 2 cut(s) 36, 1880
BspHI TCATGA 1 cut(s) 1203
BspLI GGNNCC 8 cut(s) 406, 1402, 1416, 1510, 1737, 2104, 2364, 2498
BspMAI CTGCAG 1 cut(s) 2185
BspPI GGATC 8 cut(s) 104, 694, 1092, 1409, 1422, 2097, 2110, 2225
BspQI GCTCTTC 1 cut(s) 236
BspT107I GGYRCC 1 cut(s) 1508
BspTNI GGTCTC 1 cut(s) 2124
BsrDI GCAATG 4 cut(s) 963, 1029, 2539, 2595
BsrGI TGTACA 1 cut(s) 577
BsrI ACTGG 8 cut(s) 461, 559, 597, 914, 1822, 2008, 2049, 2245
BssECI CCNNGG 5 cut(s) 172, 1410, 1512, 2395, 2446
BssNAI GTATAC 1 cut(s) 2524
BssT1I CCWWGG 2 cut(s) 1512, 2446
Bst1107I GTATAC 1 cut(s) 2524
Bst2UI CCWGG 5 cut(s) 173, 716, 1649, 2139, 2396
Bst6I CTCTTC 5 cut(s) 39, 236, 1227, 1568, 2127
BstAUI TGTACA 1 cut(s) 577
BstBAI YACGTR 1 cut(s) 2505
BstC8I GCNNGC 7 cut(s) 751, 788, 1319, 1878, 2346, 2598, 2653
BstDSI CCRYGG 1 cut(s) 1512
BstEII GGTNACC 1 cut(s) 646
BstENI CCTNNNNNAGG 1 cut(s) 947
BstF5I GGATG 9 cut(s) 97, 406, 964, 1657, 1687, 1847, 1878, 2620, 2634
BstFNI CGCG 2 cut(s) 36, 1880
BstMAI GTCTC 6 cut(s) 1634, 1697, 1779, 1903, 2124, 2431
BstMCI CGRYCG 2 cut(s) 34, 757
BstMWI GCNNNNNNNGC 5 cut(s) 476, 827, 1040, 2069, 2078
BstNI CCWGG 5 cut(s) 173, 716, 1649, 2139, 2396
BstNSI RCATGY 2 cut(s) 2000, 2348
BstPI GGTNACC 1 cut(s) 646
BstSCI CCNGG 6 cut(s) 171, 714, 1473, 1647, 2137, 2394
BstSFI CTRYAG 2 cut(s) 201, 2181
BstSLI GKGCMC 4 cut(s) 668, 1404, 2366, 2471
BstUI CGCG 2 cut(s) 36, 1880
BstV1I GCAGC 6 cut(s) 488, 581, 808, 916, 2290, 2467
BstV2I GAAGAC 3 cut(s) 1067, 1350, 1721
BstX2I RGATCY 3 cut(s) 1414, 2102, 2606
BstYI RGATCY 3 cut(s) 1414, 2102, 2606
BstZ17I GTATAC 1 cut(s) 2524
BsuRI GGCC 8 cut(s) 368, 1402, 1842, 2142, 2364, 2394, 2400, 2651
BtgI CCRYGG 1 cut(s) 1512
BtsCI GGATG 9 cut(s) 97, 406, 964, 1657, 1687, 1847, 1878, 2620, 2634
BtsIMutI CAGTG 9 cut(s) 468, 590, 666, 921, 1166, 1467, 1576, 2238, 2632
BtuMI TCGCGA 1 cut(s) 36
Cac8I GCNNGC 7 cut(s) 751, 788, 1319, 1878, 2346, 2598, 2653
CaiI CAGNNNCTG 1 cut(s) 1931
CciI TCATGA 1 cut(s) 1203
CseI GACGC 1 cut(s) 1869
Csp6I GTAC 8 cut(s) 49, 578, 741, 1249, 1435, 1757, 2011, 2330
CviQI GTAC 8 cut(s) 49, 578, 741, 1249, 1435, 1757, 2011, 2330
EaeI YGGCCR 2 cut(s) 2140, 2649
Eam1104I CTCTTC 5 cut(s) 39, 236, 1227, 1568, 2127
EarI CTCTTC 5 cut(s) 39, 236, 1227, 1568, 2127
Ecl136II GAGCTC 1 cut(s) 1199
Eco130I CCWWGG 2 cut(s) 1512, 2446
Eco24I GRGCYC 3 cut(s) 1201, 1404, 2366
Eco31I GGTCTC 1 cut(s) 2124
Eco32I GATATC 1 cut(s) 1294
Eco47I GGWCC 3 cut(s) 2287, 2496, 2542
Eco53kI GAGCTC 1 cut(s) 1199
Eco57I CTGAAG 6 cut(s) 71, 872, 1079, 1713, 2097, 2115
Eco72I CACGTG 1 cut(s) 2505
Eco88I CYCGRG 2 cut(s) 1533, 2033
Eco91I GGTNACC 1 cut(s) 646
EcoICRI GAGCTC 1 cut(s) 1199
EcoNI CCTNNNNNAGG 1 cut(s) 947
EcoO109I RGGNCCY 4 cut(s) 1400, 2287, 2496, 2542
EcoO65I GGTNACC 1 cut(s) 646
EcoRI GAATTC 1 cut(s) 1352
EcoRII CCWGG 5 cut(s) 171, 714, 1647, 2137, 2394
EcoRV GATATC 1 cut(s) 1294
EcoT14I CCWWGG 2 cut(s) 1512, 2446
EcoT22I ATGCAT 1 cut(s) 2350
EcoT38I GRGCYC 3 cut(s) 1201, 1404, 2366
ErhI CCWWGG 2 cut(s) 1512, 2446
FaqI GGGAC 3 cut(s) 1670, 2162, 2482
FauI CCCGC 1 cut(s) 2092
FblI GTMKAC 1 cut(s) 2523
Fnu4HI GCNGC 8 cut(s) 477, 570, 791, 822, 930, 2304, 2456, 2656
FokI GGATG 9 cut(s) 104, 413, 951, 1664, 1694, 1834, 1885, 2621, 2627
FriOI GRGCYC 3 cut(s) 1201, 1404, 2366
Fsp4HI GCNGC 8 cut(s) 477, 570, 791, 822, 930, 2304, 2456, 2656
FspBI CTAG 6 cut(s) 96, 119, 482, 711, 1479, 2659
GluI GCNGC 8 cut(s) 477, 570, 791, 822, 930, 2304, 2456, 2656
GsuI CTGGAG 2 cut(s) 488, 2303
HaeIII GGCC 8 cut(s) 368, 1402, 1842, 2142, 2364, 2394, 2400, 2651
HapII CCGG 3 cut(s) 872, 1474, 1889
HgaI GACGC 1 cut(s) 1869
HincII GTYRAC 3 cut(s) 1267, 1941, 1969
HindII GTYRAC 3 cut(s) 1267, 1941, 1969
HindIII AAGCTT 2 cut(s) 152, 2594
HinfI GANTC 7 cut(s) 457, 728, 868, 1073, 1268, 1279, 1520
HpaI GTTAAC 1 cut(s) 1969
HpaII CCGG 3 cut(s) 872, 1474, 1889
HphI GGTGA 4 cut(s) 188, 282, 1039, 2255
Hpy166II GTNNAC 6 cut(s) 743, 1267, 1941, 1969, 2332, 2524
Hpy8I GTNNAC 6 cut(s) 743, 1267, 1941, 1969, 2332, 2524
Hpy99I CGWCG 2 cut(s) 32, 41
HpyAV CCTTC 8 cut(s) 16, 193, 303, 328, 419, 1391, 2165, 2314
HpyCH4IV ACGT 2 cut(s) 1971, 2504
HpyF10VI GCNNNNNNNGC 5 cut(s) 476, 827, 1040, 2069, 2078
HpySE526I ACGT 2 cut(s) 1971, 2504
Kpn2I TCCGGA 1 cut(s) 1888
KspAI GTTAAC 1 cut(s) 1969
LguI GCTCTTC 1 cut(s) 236
LmnI GCTCC 2 cut(s) 329, 1834
Lsp1109I GCAGC 6 cut(s) 488, 581, 808, 916, 2290, 2467
LweI GCATC 9 cut(s) 82, 122, 1462, 1547, 1849, 1856, 1863, 2059, 2620
MaeI CTAG 6 cut(s) 96, 119, 482, 711, 1479, 2659
MaeII ACGT 2 cut(s) 1971, 2504
MaeIII GTNAC 6 cut(s) 220, 316, 646, 850, 976, 2617
MfeI CAATTG 1 cut(s) 1260
MflI RGATCY 3 cut(s) 1414, 2102, 2606
MhlI GDGCHC 6 cut(s) 668, 1201, 1404, 1831, 2366, 2471
MlsI TGGCCA 2 cut(s) 2142, 2651
MluNI TGGCCA 2 cut(s) 2142, 2651
MlyI GAGTC 4 cut(s) 737, 862, 1082, 1262
MmeI TCCRAC 3 cut(s) 371, 2167, 2258
Mox20I TGGCCA 2 cut(s) 2142, 2651
Mph1103I ATGCAT 1 cut(s) 2350
MroI TCCGGA 1 cut(s) 1888
MroXI GAANNNNTTC 1 cut(s) 2194
MscI TGGCCA 2 cut(s) 2142, 2651
MseI TTAA 8 cut(s) 105, 329, 899, 920, 1550, 1608, 1770, 1968
MslI CAYNNNNRTG 3 cut(s) 380, 995, 1329
Msp20I TGGCCA 2 cut(s) 2142, 2651
MspA1I CMGCKG 3 cut(s) 892, 2281, 2655
MspI CCGG 3 cut(s) 872, 1474, 1889
MspR9I CCNGG 6 cut(s) 173, 716, 1475, 1649, 2139, 2396
MunI CAATTG 1 cut(s) 1260
Mva1269I GAATGC 3 cut(s) 492, 1468, 2457
MvaI CCWGG 5 cut(s) 173, 716, 1649, 2139, 2396
MvnI CGCG 2 cut(s) 36, 1880
MwoI GCNNNNNNNGC 5 cut(s) 476, 827, 1040, 2069, 2078
NciI CCSGG 1 cut(s) 1475
NcoI CCATGG 1 cut(s) 1512
NlaIV GGNNCC 8 cut(s) 406, 1402, 1416, 1510, 1737, 2104, 2364, 2498
NmuCI GTSAC 4 cut(s) 220, 316, 850, 2617
NruI TCGCGA 1 cut(s) 36
NsiI ATGCAT 1 cut(s) 2350
NspI RCATGY 2 cut(s) 2000, 2348
PaeI GCATGC 1 cut(s) 2348
PaeR7I CTCGAG 1 cut(s) 1533
PagI TCATGA 1 cut(s) 1203
PciSI GCTCTTC 1 cut(s) 236
PcsI WCGNNNNNNNCGW 2 cut(s) 33, 36
PctI GAATGC 3 cut(s) 492, 1468, 2457
PdmI GAANNNNTTC 1 cut(s) 2194
PfeI GAWTC 3 cut(s) 457, 1279, 1520
PflMI CCANNNNNTGG 2 cut(s) 592, 2240
PkrI GCNGC 8 cut(s) 478, 571, 792, 823, 931, 2305, 2457, 2657
Ple19I CGATCG 2 cut(s) 34, 757
PleI GAGTC 4 cut(s) 736, 862, 1081, 1262
PmaCI CACGTG 1 cut(s) 2505
PmlI CACGTG 1 cut(s) 2505
PpsI GAGTC 4 cut(s) 736, 862, 1081, 1262
Ppu21I YACGTR 1 cut(s) 2505
PpuMI RGGWCCY 3 cut(s) 2287, 2496, 2542
PsiI TTATAA 1 cut(s) 1443
Psp124BI GAGCTC 1 cut(s) 1201
Psp1406I AACGTT 1 cut(s) 1971
Psp5II RGGWCCY 3 cut(s) 2287, 2496, 2542
Psp6I CCWGG 5 cut(s) 171, 714, 1647, 2137, 2394
PspCI CACGTG 1 cut(s) 2505
PspEI GGTNACC 1 cut(s) 646
PspGI CCWGG 5 cut(s) 171, 714, 1647, 2137, 2394
PspN4I GGNNCC 8 cut(s) 406, 1402, 1416, 1510, 1737, 2104, 2364, 2498
PspOMI GGGCCC 2 cut(s) 1400, 2362
PspPPI RGGWCCY 3 cut(s) 2287, 2496, 2542
PspXI VCTCGAGB 1 cut(s) 1533
PsrI GAACNNNNNNTAC 2 cut(s) 397, 429
PstI CTGCAG 1 cut(s) 2185
PstNI CAGNNNCTG 1 cut(s) 1931
PsuI RGATCY 3 cut(s) 1414, 2102, 2606
PvuI CGATCG 2 cut(s) 34, 757
PvuII CAGCTG 2 cut(s) 892, 2281
RruI TCGCGA 1 cut(s) 36
RsaI GTAC 8 cut(s) 50, 579, 742, 1250, 1436, 1758, 2012, 2331
RsaNI GTAC 8 cut(s) 49, 578, 741, 1249, 1435, 1757, 2011, 2330
RseI CAYNNNNRTG 3 cut(s) 380, 995, 1329
SacI GAGCTC 1 cut(s) 1201
SapI GCTCTTC 1 cut(s) 236
SaqAI TTAA 8 cut(s) 105, 329, 899, 920, 1550, 1608, 1770, 1968
SatI GCNGC 8 cut(s) 477, 570, 791, 822, 930, 2304, 2456, 2656
ScaI AGTACT 1 cut(s) 50
SchI GAGTC 4 cut(s) 737, 862, 1082, 1262
ScrFI CCNGG 6 cut(s) 173, 716, 1475, 1649, 2139, 2396
SduI GDGCHC 6 cut(s) 668, 1201, 1404, 1831, 2366, 2471
SfaNI GCATC 9 cut(s) 82, 122, 1462, 1547, 1849, 1856, 1863, 2059, 2620
SfcI CTRYAG 2 cut(s) 201, 2181
Sfr274I CTCGAG 1 cut(s) 1533
SinI GGWCC 3 cut(s) 2287, 2496, 2542
SlaI CTCGAG 1 cut(s) 1533
SmiMI CAYNNNNRTG 3 cut(s) 380, 995, 1329
SmlI CTYRAG 5 cut(s) 776, 1457, 1533, 1700, 2491
SmoI CTYRAG 5 cut(s) 776, 1457, 1533, 1700, 2491
SphI GCATGC 1 cut(s) 2348
SsiI CCGC 6 cut(s) 790, 932, 2099, 2551, 2600, 2655
SspMI CTAG 6 cut(s) 96, 119, 482, 711, 1479, 2659
SstI GAGCTC 1 cut(s) 1201
StyD4I CCNGG 6 cut(s) 171, 714, 1473, 1647, 2137, 2394
StyI CCWWGG 2 cut(s) 1512, 2446
TaiI ACGT 2 cut(s) 1974, 2507
TaqI TCGA 8 cut(s) 673, 1228, 1271, 1447, 1534, 1566, 1857, 1989
TatI WGTACW 6 cut(s) 48, 577, 740, 1248, 2010, 2329
TauI GCSGC 2 cut(s) 793, 2658
TfiI GAWTC 3 cut(s) 457, 1279, 1520
Tru1I TTAA 8 cut(s) 105, 329, 899, 920, 1550, 1608, 1770, 1968
Tru9I TTAA 8 cut(s) 105, 329, 899, 920, 1550, 1608, 1770, 1968
TscAI CASTG 9 cut(s) 468, 597, 673, 921, 1173, 1474, 1576, 2245, 2632
TseFI GTSAC 4 cut(s) 220, 316, 850, 2617
TseI GCWGC 6 cut(s) 476, 569, 821, 929, 2303, 2455
Tsp45I GTSAC 4 cut(s) 220, 316, 850, 2617
TspGWI ACGGA 3 cut(s) 413, 713, 2486
TspRI CASTG 9 cut(s) 468, 597, 673, 921, 1173, 1474, 1576, 2245, 2632
Van91I CCANNNNNTGG 2 cut(s) 592, 2240
VpaK11BI GGWCC 3 cut(s) 2287, 2496, 2542
XagI CCTNNNNNAGG 1 cut(s) 947
XapI RAATTY 3 cut(s) 1334, 1352, 1502
XceI RCATGY 2 cut(s) 2000, 2348
XhoI CTCGAG 1 cut(s) 1533
XmiI GTMKAC 1 cut(s) 2523
XmnI GAANNNNTTC 1 cut(s) 2194
XspI CTAG 6 cut(s) 96, 119, 482, 711, 1479, 2659
ZrmI AGTACT 1 cut(s) 50
Zsp2I ATGCAT 1 cut(s) 2350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.