Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009389

Physical Location & Seq

Genomic Coordinates Forward (+)

16855825 .. 16856936

Gene Structure 1112 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G35490.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCGGCTGCTGCGAAGGAGATCCTACGGCGACCAGTGGCGGCAACAATAAGGCTAACCGTTCCGGCGGGAGGAGCGAGGCCAGCCCCACCGGTAGGTCCGGCGCTAGGTCAGTACAGGCTTAACCTGATGGCTTTCTGCAAAGACTTCAACGCTAGGACTCAAAAGTACAAACCAGACACTCCGATGGCCGTGACGATAACGGCGTTCAAGGACAACTCTTTCGAATTCACCGTCAAGTCTCCGACGGTGTCGTGGTACATCAAGAAAGCAGCTGGAGTCGATAAAGGAAGCACACGCCCGGGTCATTTGTCGGTGACGACGCTATCGGTGAGACACGTGTACGAGATCGCGAAGGTGAAGCAGACGGATCCGTTTTGTCAGTATATGCCGTTGGAATCGATTTGCAAATCCATCATTGGTACTGCTAATTCTATGGGTATCAAGATCGTTCAGGATTTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0032543 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:0098798 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

155

Amino Acids

16.89

Weight (kDa)

9.74

Isoelectric Point (pI)

34.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L11_N	PF03946	17 - 75	1e-23	Ribosomal protein L11, N-terminal domain
Ribosomal_L11	PF00298	80 - 150	2e-25	Ribosomal protein L11, RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35490 AT4G35490
fragaria_vesca	FvH4_1g10230 FvH4_1g10230 FvH4_4g16570
malus_domestica	MD02G1114300.v1.1 MD07G1093800.v1.1 MD15G1229900.v1.1
prunus_persica	Prupe.8G126100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0097051
rosa_laevigata	RLG00000016698
rosa_multiflora	Rmu_co8331479.1_g000001 Rmu_sc0006626.1_g000009 Rmu_ssc0000008.1_g000028
rosa_roxburghii	Rroxscaffold_2G00145020
rosa_rugosa	Rorug02G0063200
rosa_samantha	Rh2AG110800 Rh2BG112700 Rh2CG114900 Rh2DG114100 Rh4AG013400
rosa_wichuraiana	Rw2G008610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	353
AciI	CCGC	3 cut(s)	5, 41, 68
AclWI	GGATC	3 cut(s)	16, 365, 378
AcoI	YGGCCR	1 cut(s)	189
AcsI	RAATTY	1 cut(s)	227
AcvI	CACGTG	1 cut(s)	340
AfaI	GTAC	5 cut(s)	116, 170, 260, 344, 424
AfiI	CCNNNNNNNGG	3 cut(s)	71, 95, 107
AflIII	ACRYGT	2 cut(s)	337, 339
AgeI	ACCGGT	1 cut(s)	91
AgsI	TTSAA	2 cut(s)	151, 211
AluBI	AGCT	1 cut(s)	275
AluI	AGCT	1 cut(s)	275
Alw26I	GTCTC	2 cut(s)	246, 328
AlwI	GGATC	3 cut(s)	16, 365, 378
Ama87I	CYCGRG	1 cut(s)	301
AoxI	GGCC	2 cut(s)	80, 189
ApeKI	GCWGC	3 cut(s)	8, 11, 272
ApoI	RAATTY	1 cut(s)	227
ArsI	GACNNNNNNTTYG	4 cut(s)	206, 219, 238, 251
AsiGI	ACCGGT	1 cut(s)	91
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	1 cut(s)	98
AsuC2I	CCSGG	2 cut(s)	302, 303
AsuHPI	GGTGA	4 cut(s)	223, 328, 343, 370
AsuII	TTCGAA	1 cut(s)	225
AvaI	CYCGRG	1 cut(s)	301
AvaII	GGWCC	1 cut(s)	98
BamHI	GGATCC	1 cut(s)	370
BbrPI	CACGTG	1 cut(s)	340
BbvI	GCAGC	1 cut(s)	284
BccI	CCATC	3 cut(s)	124, 181, 422
BceAI	ACGGC	4 cut(s)	44, 176, 219, 376
BcnI	CCSGG	2 cut(s)	302, 303
BcoDI	GTCTC	2 cut(s)	246, 328
BfaI	CTAG	2 cut(s)	107, 156
BfoI	RGCGCY	1 cut(s)	107
BisI	GCNGC	5 cut(s)	6, 9, 12, 42, 273
BlsI	GCNGC	5 cut(s)	7, 10, 13, 43, 274
Bme1390I	CCNGG	2 cut(s)	302, 303
Bme18I	GGWCC	1 cut(s)	98
BmeT110I	CYCGRG	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	372
BmrFI	CCNGG	2 cut(s)	302, 303
BpmI	CTGGAG	1 cut(s)	297
Bpu14I	TTCGAA	1 cut(s)	225
BpuMI	CCSGG	2 cut(s)	302, 303
Bsa29I	ATCGAT	1 cut(s)	401
BsaAI	YACGTR	1 cut(s)	340
BsaJI	CCNNGG	1 cut(s)	301
BsaWI	WCCGGW	1 cut(s)	91
Bsc4I	CCNNNNNNNGG	3 cut(s)	71, 95, 107
Bse118I	RCCGGY	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	35
BseCI	ATCGAT	1 cut(s)	401
BseDI	CCNNGG	1 cut(s)	301
BseLI	CCNNNNNNNGG	3 cut(s)	71, 95, 107
BseNI	ACTGG	1 cut(s)	35
BseRI	GAGGAG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	284
Bsh1236I	CGCG	1 cut(s)	353
BshFI	GGCC	2 cut(s)	82, 191
BshTI	ACCGGT	1 cut(s)	91
BshVI	ATCGAT	1 cut(s)	401
BsiHKCI	CYCGRG	1 cut(s)	301
BsiSI	CCGG	4 cut(s)	65, 92, 101, 302
BslI	CCNNNNNNNGG	3 cut(s)	71, 95, 107
BsmAI	GTCTC	2 cut(s)	246, 328
BsnI	GGCC	2 cut(s)	82, 191
BsoBI	CYCGRG	1 cut(s)	301
Bsp119I	TTCGAA	1 cut(s)	225
Bsp143I	GATC	4 cut(s)	21, 348, 370, 447
Bsp68I	TCGCGA	1 cut(s)	353
BspACI	CCGC	3 cut(s)	5, 41, 68
BspANI	GGCC	2 cut(s)	82, 191
BspDI	ATCGAT	1 cut(s)	401
BspFNI	CGCG	1 cut(s)	353
BspLI	GGNNCC	1 cut(s)	372
BspPI	GGATC	3 cut(s)	16, 365, 378
BspT104I	TTCGAA	1 cut(s)	225
BsrFI	RCCGGY	1 cut(s)	91
BsrI	ACTGG	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	4 cut(s)	21, 348, 370, 447
Bst4CI	ACNGT	3 cut(s)	61, 235, 250
BstBAI	YACGTR	1 cut(s)	340
BstBI	TTCGAA	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	84
BstFNI	CGCG	1 cut(s)	353
BstH2I	RGCGCY	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	4 cut(s)	24, 351, 373, 450
BstMAI	GTCTC	2 cut(s)	246, 328
BstMBI	GATC	4 cut(s)	21, 348, 370, 447
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 74, 83
BstSCI	CCNGG	2 cut(s)	300, 301
BstUI	CGCG	1 cut(s)	353
BstV1I	GCAGC	1 cut(s)	284
BstX2I	RGATCY	2 cut(s)	21, 370
BstYI	RGATCY	2 cut(s)	21, 370
Bsu15I	ATCGAT	1 cut(s)	401
BsuRI	GGCC	2 cut(s)	82, 191
BsuTUI	ATCGAT	1 cut(s)	401
BtsIMutI	CAGTG	1 cut(s)	42
BtuMI	TCGCGA	1 cut(s)	353
Cac8I	GCNNGC	1 cut(s)	84
CfoI	GCGC	1 cut(s)	106
Cfr10I	RCCGGY	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	98
Cfr9I	CCCGGG	1 cut(s)	301
ClaI	ATCGAT	1 cut(s)	401
CseI	GACGC	1 cut(s)	331
Csp6I	GTAC	5 cut(s)	115, 169, 259, 343, 423
CspAI	ACCGGT	1 cut(s)	91
CviJI	RGCY	8 cut(s)	8, 55, 82, 86, 121, 134, 191, 275
CviKI_1	RGCY	8 cut(s)	8, 55, 82, 86, 121, 134, 191, 275
CviQI	GTAC	5 cut(s)	115, 169, 259, 343, 423
DpnI	GATC	4 cut(s)	23, 350, 372, 449
DpnII	GATC	4 cut(s)	21, 348, 370, 447
EaeI	YGGCCR	1 cut(s)	189
Eco47I	GGWCC	1 cut(s)	98
Eco72I	CACGTG	1 cut(s)	340
Eco88I	CYCGRG	1 cut(s)	301
EcoRI	GAATTC	1 cut(s)	227
FaiI	YATR	3 cut(s)	387, 389, 437
FauI	CCCGC	1 cut(s)	61
Fnu4HI	GCNGC	5 cut(s)	6, 9, 12, 42, 273
Fsp4HI	GCNGC	5 cut(s)	6, 9, 12, 42, 273
FspBI	CTAG	2 cut(s)	107, 156
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	5 cut(s)	6, 9, 12, 42, 273
GsuI	CTGGAG	1 cut(s)	297
HaeII	RGCGCY	1 cut(s)	107
HaeIII	GGCC	2 cut(s)	82, 191
HapII	CCGG	4 cut(s)	65, 92, 101, 302
HgaI	GACGC	1 cut(s)	331
HhaI	GCGC	1 cut(s)	106
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HinfI	GANTC	3 cut(s)	160, 279, 398
HpaII	CCGG	4 cut(s)	65, 92, 101, 302
HphI	GGTGA	4 cut(s)	223, 328, 343, 370
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	2 cut(s)	186, 246
Hpy188III	TCNNGA	4 cut(s)	265, 352, 445, 455
Hpy8I	GTNNAC	1 cut(s)	343
Hpy99I	CGWCG	2 cut(s)	250, 325
HpyAV	CCTTC	2 cut(s)	10, 349
HpyCH4III	ACNGT	3 cut(s)	61, 235, 250
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	2 cut(s)	141, 408
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 74, 83
HpySE526I	ACGT	1 cut(s)	339
HspAI	GCGC	1 cut(s)	104
Kzo9I	GATC	4 cut(s)	21, 348, 370, 447
LmnI	GCTCC	1 cut(s)	74
Lsp1109I	GCAGC	1 cut(s)	284
MaeI	CTAG	2 cut(s)	107, 156
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	2 cut(s)	193, 316
MalI	GATC	4 cut(s)	23, 350, 372, 449
MboI	GATC	4 cut(s)	21, 348, 370, 447
MflI	RGATCY	2 cut(s)	21, 370
MluCI	AATT	2 cut(s)	227, 430
MlyI	GAGTC	2 cut(s)	154, 288
MmeI	TCCRAC	2 cut(s)	269, 375
MnlI	CCTC	2 cut(s)	65, 72
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	1 cut(s)	185
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	4 cut(s)	65, 92, 101, 302
MspR9I	CCNGG	2 cut(s)	302, 303
MvnI	CGCG	1 cut(s)	353
MwoI	GCNNNNNNNGC	3 cut(s)	11, 74, 83
NciI	CCSGG	2 cut(s)	302, 303
NdeII	GATC	4 cut(s)	21, 348, 370, 447
NlaIV	GGNNCC	1 cut(s)	372
NmuCI	GTSAC	2 cut(s)	193, 316
NruI	TCGCGA	1 cut(s)	353
NspV	TTCGAA	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	2 cut(s)	203, 231
PfeI	GAWTC	1 cut(s)	398
PflFI	GACNNNGTC	1 cut(s)	250
PinAI	ACCGGT	1 cut(s)	91
PkrI	GCNGC	5 cut(s)	7, 10, 13, 43, 274
PleI	GAGTC	2 cut(s)	154, 287
PmaCI	CACGTG	1 cut(s)	340
PmlI	CACGTG	1 cut(s)	340
PpsI	GAGTC	2 cut(s)	154, 287
Ppu21I	YACGTR	1 cut(s)	340
PspCI	CACGTG	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	372
PspPI	GGNCC	1 cut(s)	98
PsuI	RGATCY	2 cut(s)	21, 370
PsyI	GACNNNGTC	1 cut(s)	250
PvuII	CAGCTG	1 cut(s)	275
RruI	TCGCGA	1 cut(s)	353
RsaI	GTAC	5 cut(s)	116, 170, 260, 344, 424
RsaNI	GTAC	5 cut(s)	115, 169, 259, 343, 423
RseI	CAYNNNNRTG	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	5 cut(s)	6, 9, 12, 42, 273
Sau3AI	GATC	4 cut(s)	21, 348, 370, 447
Sau96I	GGNCC	1 cut(s)	98
SchI	GAGTC	2 cut(s)	154, 288
ScrFI	CCNGG	2 cut(s)	302, 303
SetI	ASST	6 cut(s)	100, 112, 129, 277, 342, 360
SfuI	TTCGAA	1 cut(s)	225
SinI	GGWCC	1 cut(s)	98
SmaI	CCCGGG	1 cut(s)	303
SmiMI	CAYNNNNRTG	1 cut(s)	185
Sse9I	AATT	2 cut(s)	227, 430
SsiI	CCGC	3 cut(s)	5, 41, 68
SspMI	CTAG	2 cut(s)	107, 156
StyD4I	CCNGG	2 cut(s)	300, 301
TaaI	ACNGT	3 cut(s)	61, 235, 250
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	3 cut(s)	225, 282, 401
TasI	AATT	2 cut(s)	227, 430
TatI	WGTACW	2 cut(s)	114, 168
TauI	GCSGC	2 cut(s)	8, 44
TfiI	GAWTC	1 cut(s)	398
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	1 cut(s)	42
TseFI	GTSAC	2 cut(s)	193, 316
TseI	GCWGC	3 cut(s)	8, 11, 272
Tsp45I	GTSAC	2 cut(s)	193, 316
TspGWI	ACGGA	2 cut(s)	363, 383
TspMI	CCCGGG	1 cut(s)	301
TspRI	CASTG	1 cut(s)	42
Tth111I	GACNNNGTC	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	98
XapI	RAATTY	1 cut(s)	227
XmaI	CCCGGG	1 cut(s)	301
XspI	CTAG	2 cut(s)	107, 156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.