Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009389

Physical Location & Seq

Genomic Coordinates Forward (+)

5577452 .. 5579425

Gene Structure 1974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g10230.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGGCTTGGGCTTGTTCACCCGGCCCAACTCCTCAGCGCCCCATTTTCTACTTGTAGCTCTCACTCTCCAGTCCTCAAACCAAAGCAGAGCTATGGCAACCCTTAAGGAAATCCTAACGCGCCGCCCAGTCGCGGCGACGATTCGCCTCACCGTCCCCGCGGGCGGGGCCCGACCCGCGCCGCCGGTGGGACCGGCTCTAGGTCAGTACCGGCTGAACCTGATGGCCTTCTGCAAGGACTTCAACGCGAGAACGCAGAAGTACAAACCGGAGACGCCGATGGCGGTGACGATCACGGCGTTCAAGGACAACACGTTCGAGTTCACGGTGAAGTCGCCGTCGGTGACGTGGTACTTGAAGAAGGCGGCGGGGATAGAGTCCGGGAGCGGGAGGGCGGGGCACGTGACGGCGTCGACGGTGTCGGTGAGGCACGTGTATGAGATCGCGAAAGTGAAGCAGTCCGATCCGTACTGTCAGTACATGCCGTTGGAGTCGATCTGCAAGTCGGTTATAGGGACGGCGAACTCCATGGGGATTCAGGTGGTCAAGGACTTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0032543 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:0098798 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

187

Amino Acids

20.15

Weight (kDa)

9.84

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L11_N	PF03946	48 - 106	5.2e-23	Ribosomal protein L11, N-terminal domain
Ribosomal_L11	PF00298	111 - 181	6.4e-26	Ribosomal protein L11, RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35490 AT4G35490
fragaria_vesca	FvH4_1g10230 FvH4_1g10230 FvH4_4g16570
malus_domestica	MD02G1114300.v1.1 MD07G1093800.v1.1 MD15G1229900.v1.1
prunus_persica	Prupe.8G126100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0097051
rosa_laevigata	RLG00000016698
rosa_multiflora	Rmu_co8331479.1_g000001 Rmu_sc0006626.1_g000009 Rmu_ssc0000008.1_g000028
rosa_roxburghii	Rroxscaffold_2G00145020
rosa_rugosa	Rorug02G0063200
rosa_samantha	Rh2AG110800 Rh2BG112700 Rh2CG114900 Rh2DG114100 Rh4AG013400
rosa_wichuraiana	Rw2G008610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	387
AccI	GTMKAC	1 cut(s)	413
AccII	CGCG	6 cut(s)	121, 134, 161, 179, 248, 446
AclWI	GGATC	1 cut(s)	458
AcvI	CACGTG	2 cut(s)	403, 433
AcyI	GRCGYC	2 cut(s)	275, 410
AfaI	GTAC	5 cut(s)	209, 263, 353, 470, 479
AfiI	CCNNNNNNNGG	6 cut(s)	133, 164, 165, 188, 200, 387
AflII	CTTAAG	1 cut(s)	104
AflIII	ACRYGT	2 cut(s)	312, 432
AgsI	TTSAA	3 cut(s)	244, 304, 358
AjiI	CACGTC	1 cut(s)	348
AloI	GAACNNNNNNTCC	2 cut(s)	299, 331
AluBI	AGCT	2 cut(s)	59, 92
AluI	AGCT	2 cut(s)	59, 92
Alw26I	GTCTC	1 cut(s)	266
AlwI	GGATC	1 cut(s)	458
AoxI	GGCC	3 cut(s)	23, 168, 225
ApaI	GGGCCC	1 cut(s)	172
ArsI	GACNNNNNNTTYG	2 cut(s)	299, 331
AspLEI	GCGC	3 cut(s)	40, 123, 181
AspS9I	GGNCC	4 cut(s)	24, 168, 169, 191
AsuC2I	CCSGG	2 cut(s)	22, 382
AsuHPI	GGTGA	6 cut(s)	10, 142, 298, 340, 355, 436
AvaII	GGWCC	1 cut(s)	191
BaeGI	GKGCMC	2 cut(s)	172, 402
BanII	GRGCYC	1 cut(s)	172
BbrPI	CACGTG	2 cut(s)	403, 433
BbvCI	CCTCAGC	1 cut(s)	34
BccI	CCATC	2 cut(s)	217, 274
BceAI	ACGGC	5 cut(s)	312, 322, 423, 469, 534
BcnI	CCSGG	2 cut(s)	22, 382
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	1 cut(s)	200
BfoI	RGCGCY	1 cut(s)	41
BfrI	CTTAAG	1 cut(s)	104
BisI	GCNGC	4 cut(s)	124, 135, 182, 366
BlsI	GCNGC	4 cut(s)	125, 136, 183, 367
Bme1390I	CCNGG	2 cut(s)	22, 382
Bme18I	GGWCC	1 cut(s)	191
BmgBI	CACGTC	1 cut(s)	348
BmgT120I	GGNCC	4 cut(s)	24, 168, 169, 191
BmiI	GGNNCC	3 cut(s)	169, 170, 192
BmrFI	CCNGG	2 cut(s)	22, 382
BmrI	ACTGGG	1 cut(s)	122
BmuI	ACTGGG	1 cut(s)	122
BpmI	CTGGAG	1 cut(s)	53
Bpu10I	CCTNAGC	1 cut(s)	34
BpuMI	CCSGG	2 cut(s)	22, 382
BsaAI	YACGTR	2 cut(s)	403, 433
BsaHI	GRCGYC	2 cut(s)	275, 410
BsaJI	CCNNGG	2 cut(s)	159, 528
BsaWI	WCCGGW	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	6 cut(s)	133, 164, 165, 188, 200, 387
Bse118I	RCCGGY	3 cut(s)	184, 193, 210
Bse1I	ACTGG	2 cut(s)	70, 128
BseDI	CCNNGG	2 cut(s)	159, 528
BseLI	CCNNNNNNNGG	6 cut(s)	133, 164, 165, 188, 200, 387
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	2 cut(s)	70, 128
BseRI	GAGGAG	1 cut(s)	22
BseSI	GKGCMC	2 cut(s)	172, 402
Bsh1236I	CGCG	6 cut(s)	121, 134, 161, 179, 248, 446
BshFI	GGCC	3 cut(s)	25, 170, 227
BsiSI	CCGG	6 cut(s)	22, 185, 194, 211, 269, 381
BslFI	GGGAC	3 cut(s)	140, 204, 529
BslI	CCNNNNNNNGG	6 cut(s)	133, 164, 165, 188, 200, 387
BsmAI	GTCTC	1 cut(s)	266
BsmBI	CGTCTC	1 cut(s)	266
BsmFI	GGGAC	3 cut(s)	140, 204, 529
BsnI	GGCC	3 cut(s)	25, 170, 227
Bsp120I	GGGCCC	1 cut(s)	168
Bsp1286I	GDGCHC	2 cut(s)	172, 402
Bsp143I	GATC	4 cut(s)	291, 441, 463, 495
Bsp19I	CCATGG	1 cut(s)	528
Bsp68I	TCGCGA	1 cut(s)	446
BspANI	GGCC	3 cut(s)	25, 170, 227
BspCNI	CTCAG	1 cut(s)	47
BspFNI	CGCG	6 cut(s)	121, 134, 161, 179, 248, 446
BspLI	GGNNCC	3 cut(s)	169, 170, 192
BspPI	GGATC	1 cut(s)	458
BspTI	CTTAAG	1 cut(s)	104
BsrBI	CCGCTC	1 cut(s)	387
BsrFI	RCCGGY	3 cut(s)	184, 193, 210
BsrI	ACTGG	2 cut(s)	70, 128
BssAI	RCCGGY	3 cut(s)	184, 193, 210
BssECI	CCNNGG	2 cut(s)	159, 528
BssMI	GATC	4 cut(s)	291, 441, 463, 495
BssNI	GRCGYC	2 cut(s)	275, 410
BssT1I	CCWWGG	1 cut(s)	528
Bst4CI	ACNGT	4 cut(s)	154, 328, 418, 473
BstACI	GRCGYC	2 cut(s)	275, 410
BstAFI	CTTAAG	1 cut(s)	104
BstBAI	YACGTR	2 cut(s)	403, 433
BstC8I	GCNNGC	1 cut(s)	163
BstDEI	CTNAG	1 cut(s)	34
BstDSI	CCRYGG	2 cut(s)	159, 528
BstFNI	CGCG	6 cut(s)	121, 134, 161, 179, 248, 446
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	3 cut(s)	40, 123, 181
BstKTI	GATC	4 cut(s)	294, 444, 466, 498
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	4 cut(s)	291, 441, 463, 495
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 176
BstNSI	RCATGY	1 cut(s)	484
BstSCI	CCNGG	2 cut(s)	20, 380
BstSLI	GKGCMC	2 cut(s)	172, 402
BstUI	CGCG	6 cut(s)	121, 134, 161, 179, 248, 446
BsuRI	GGCC	3 cut(s)	25, 170, 227
BtgI	CCRYGG	2 cut(s)	159, 528
BtrI	CACGTC	1 cut(s)	348
BtuMI	TCGCGA	1 cut(s)	446
Cac8I	GCNNGC	1 cut(s)	163
CfoI	GCGC	3 cut(s)	40, 123, 181
Cfr10I	RCCGGY	3 cut(s)	184, 193, 210
Cfr13I	GGNCC	4 cut(s)	24, 168, 169, 191
Cfr42I	CCGCGG	1 cut(s)	162
CseI	GACGC	2 cut(s)	283, 399
Csp6I	GTAC	5 cut(s)	208, 262, 352, 469, 478
CviAII	CATG	2 cut(s)	481, 529
CviJI	RGCY	9 cut(s)	6, 12, 25, 59, 92, 170, 197, 214, 227
CviKI_1	RGCY	9 cut(s)	6, 12, 25, 59, 92, 170, 197, 214, 227
CviQI	GTAC	5 cut(s)	208, 262, 352, 469, 478
DdeI	CTNAG	1 cut(s)	34
DpnI	GATC	4 cut(s)	293, 443, 465, 497
DpnII	GATC	4 cut(s)	291, 441, 463, 495
Eco130I	CCWWGG	1 cut(s)	528
Eco24I	GRGCYC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	191
Eco72I	CACGTG	2 cut(s)	403, 433
EcoO109I	RGGNCCY	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	528
EcoT38I	GRGCYC	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	528
Esp3I	CGTCTC	1 cut(s)	266
FaeI	CATG	2 cut(s)	484, 532
FaiI	YATR	5 cut(s)	95, 438, 482, 512, 530
FaqI	GGGAC	3 cut(s)	140, 204, 529
FatI	CATG	2 cut(s)	480, 528
FauI	CCCGC	7 cut(s)	154, 158, 166, 184, 361, 380, 388
FblI	GTMKAC	1 cut(s)	413
Fnu4HI	GCNGC	4 cut(s)	124, 135, 182, 366
FriOI	GRGCYC	1 cut(s)	172
Fsp4HI	GCNGC	4 cut(s)	124, 135, 182, 366
FspBI	CTAG	1 cut(s)	200
GlaI	GCGC	3 cut(s)	39, 122, 180
GluI	GCNGC	4 cut(s)	124, 135, 182, 366
GsuI	CTGGAG	1 cut(s)	53
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	3 cut(s)	25, 170, 227
HapII	CCGG	6 cut(s)	22, 185, 194, 211, 269, 381
HgaI	GACGC	2 cut(s)	283, 399
HhaI	GCGC	3 cut(s)	40, 123, 181
Hin1I	GRCGYC	2 cut(s)	275, 410
Hin1II	CATG	2 cut(s)	484, 532
Hin6I	GCGC	3 cut(s)	38, 121, 179
HinP1I	GCGC	3 cut(s)	38, 121, 179
HincII	GTYRAC	1 cut(s)	414
HindII	GTYRAC	1 cut(s)	414
HinfI	GANTC	4 cut(s)	142, 377, 491, 535
HpaII	CCGG	6 cut(s)	22, 185, 194, 211, 269, 381
HphI	GGTGA	6 cut(s)	10, 142, 298, 340, 355, 436
Hpy166II	GTNNAC	3 cut(s)	18, 324, 414
Hpy188I	TCNGA	1 cut(s)	463
Hpy188III	TCNNGA	1 cut(s)	445
Hpy8I	GTNNAC	3 cut(s)	18, 324, 414
Hpy99I	CGWCG	4 cut(s)	142, 343, 415, 418
HpyAV	CCTTC	2 cut(s)	238, 355
HpyCH4III	ACNGT	4 cut(s)	154, 328, 418, 473
HpyCH4IV	ACGT	4 cut(s)	314, 347, 402, 432
HpyCH4V	TGCA	2 cut(s)	234, 501
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 176
HpyF3I	CTNAG	1 cut(s)	34
HpySE526I	ACGT	4 cut(s)	314, 347, 402, 432
Hsp92I	GRCGYC	2 cut(s)	275, 410
Hsp92II	CATG	2 cut(s)	484, 532
HspAI	GCGC	3 cut(s)	38, 121, 179
KspI	CCGCGG	1 cut(s)	162
Kzo9I	GATC	4 cut(s)	291, 441, 463, 495
LmnI	GCTCC	1 cut(s)	384
MaeI	CTAG	1 cut(s)	200
MaeII	ACGT	4 cut(s)	314, 347, 402, 432
MaeIII	GTNAC	3 cut(s)	286, 343, 403
MalI	GATC	4 cut(s)	293, 443, 465, 497
MbiI	CCGCTC	1 cut(s)	387
MboI	GATC	4 cut(s)	291, 441, 463, 495
MboII	GAAGA	1 cut(s)	370
MhlI	GDGCHC	2 cut(s)	172, 402
MlyI	GAGTC	2 cut(s)	386, 500
MmeI	TCCRAC	1 cut(s)	468
MnlI	CCTC	5 cut(s)	43, 85, 158, 384, 420
MseI	TTAA	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	435
MspA1I	CMGCKG	1 cut(s)	161
MspCI	CTTAAG	1 cut(s)	104
MspI	CCGG	6 cut(s)	22, 185, 194, 211, 269, 381
MspR9I	CCNGG	2 cut(s)	22, 382
MvnI	CGCG	6 cut(s)	121, 134, 161, 179, 248, 446
MwoI	GCNNNNNNNGC	2 cut(s)	167, 176
NciI	CCSGG	2 cut(s)	22, 382
NcoI	CCATGG	1 cut(s)	528
NdeII	GATC	4 cut(s)	291, 441, 463, 495
NlaIII	CATG	2 cut(s)	484, 532
NlaIV	GGNNCC	3 cut(s)	169, 170, 192
NmuCI	GTSAC	3 cut(s)	286, 343, 403
NruI	TCGCGA	1 cut(s)	446
NspI	RCATGY	1 cut(s)	484
PcsI	WCGNNNNNNNCGW	1 cut(s)	296
PfeI	GAWTC	2 cut(s)	142, 535
PflFI	GACNNNGTC	2 cut(s)	409, 418
PfoI	TCCNGGA	1 cut(s)	380
PkrI	GCNGC	4 cut(s)	125, 136, 183, 367
PleI	GAGTC	2 cut(s)	385, 499
PmaCI	CACGTG	2 cut(s)	403, 433
PmlI	CACGTG	2 cut(s)	403, 433
PpsI	GAGTC	2 cut(s)	385, 499
Ppu21I	YACGTR	2 cut(s)	403, 433
PspCI	CACGTG	2 cut(s)	403, 433
PspN4I	GGNNCC	3 cut(s)	169, 170, 192
PspOMI	GGGCCC	1 cut(s)	168
PspPI	GGNCC	4 cut(s)	24, 168, 169, 191
PsyI	GACNNNGTC	2 cut(s)	409, 418
RruI	TCGCGA	1 cut(s)	446
RsaI	GTAC	5 cut(s)	209, 263, 353, 470, 479
RsaNI	GTAC	5 cut(s)	208, 262, 352, 469, 478
RseI	CAYNNNNRTG	1 cut(s)	435
SacII	CCGCGG	1 cut(s)	162
SalI	GTCGAC	1 cut(s)	412
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	4 cut(s)	124, 135, 182, 366
Sau3AI	GATC	4 cut(s)	291, 441, 463, 495
Sau96I	GGNCC	4 cut(s)	24, 168, 169, 191
SchI	GAGTC	2 cut(s)	386, 500
ScrFI	CCNGG	2 cut(s)	22, 382
SduI	GDGCHC	2 cut(s)	172, 402
SetI	ASST	9 cut(s)	61, 94, 205, 222, 317, 350, 405, 435, 543
Sfr303I	CCGCGG	1 cut(s)	162
SgrAI	CRCCGGYG	1 cut(s)	184
SgrBI	CCGCGG	1 cut(s)	162
SgrDI	CGTCGACG	1 cut(s)	412
SinI	GGWCC	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	435
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SspMI	CTAG	1 cut(s)	200
StyD4I	CCNGG	2 cut(s)	20, 380
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	4 cut(s)	154, 328, 418, 473
TaiI	ACGT	4 cut(s)	317, 350, 405, 435
TaqI	TCGA	3 cut(s)	318, 413, 494
TatI	WGTACW	2 cut(s)	261, 477
TauI	GCSGC	4 cut(s)	126, 137, 184, 368
TfiI	GAWTC	2 cut(s)	142, 535
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TseFI	GTSAC	3 cut(s)	286, 343, 403
Tsp45I	GTSAC	3 cut(s)	286, 343, 403
TspGWI	ACGGA	1 cut(s)	456
Tth111I	GACNNNGTC	2 cut(s)	409, 418
Vha464I	CTTAAG	1 cut(s)	104
VpaK11BI	GGWCC	1 cut(s)	191
XceI	RCATGY	1 cut(s)	484
XmiI	GTMKAC	1 cut(s)	413
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.