Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0009389

Physical Location & Seq

Genomic Coordinates Forward (+)

2306362 .. 2306670

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG013400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCAACCCTTGAGGAAATCCTAACACGCCGCCCAGTCGCCGCGGCGACCCGCCTCACCCGACATGCACCGCCGGTGTCCTGCTTTAGGTCAGTCCCGCCTCAACCTAATGGCCTTCTGCAAAGACTTCAATGCCCAACGCAGAAGCACAAACCTGATACTCCCATGGCAGTGACCATTACGGTGTTCAAGGACAACACTTTCGAATTCACCGTCAAGTCGCCGCCGGTGACGTGGTATTTGAAGAAGGCGGAGGGGATTGAGTCCGAAAGAGGCTGGCCGGGGCACGCGGTGGCGTCGACGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0032543 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:0098798 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

102

Amino Acids

11.35

Weight (kDa)

9.69

Isoelectric Point (pI)

65.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35490 AT4G35490
fragaria_vesca	FvH4_1g10230 FvH4_1g10230 FvH4_4g16570
malus_domestica	MD02G1114300.v1.1 MD07G1093800.v1.1 MD15G1229900.v1.1
prunus_persica	Prupe.8G126100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0097051
rosa_laevigata	RLG00000016698
rosa_multiflora	Rmu_co8331479.1_g000001 Rmu_sc0006626.1_g000009 Rmu_ssc0000008.1_g000028
rosa_roxburghii	Rroxscaffold_2G00145020
rosa_rugosa	Rorug02G0063200
rosa_samantha	Rh2AG110800 Rh2BG112700 Rh2CG114900 Rh2DG114100 Rh4AG013400
rosa_wichuraiana	Rw2G008610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	299
AccII	CGCG	2 cut(s)	44, 290
AciI	CCGC	9 cut(s)	31, 42, 44, 52, 71, 98, 224, 251, 290
AcoI	YGGCCR	1 cut(s)	278
AcsI	RAATTY	1 cut(s)	206
AcyI	GRCGYC	1 cut(s)	296
AdeI	CACNNNGTG	1 cut(s)	292
AfiI	CCNNNNNNNGG	1 cut(s)	87
AgsI	TTSAA	3 cut(s)	131, 190, 244
AjiI	CACGTC	1 cut(s)	234
AoxI	GGCC	2 cut(s)	112, 278
ApoI	RAATTY	1 cut(s)	206
ArsI	GACNNNNNNTTYG	6 cut(s)	185, 198, 217, 223, 230, 255
AsuC2I	CCSGG	1 cut(s)	282
AsuHPI	GGTGA	3 cut(s)	49, 202, 241
AsuII	TTCGAA	1 cut(s)	204
BaeGI	GKGCMC	1 cut(s)	288
BcnI	CCSGG	1 cut(s)	282
BfmI	CTRYAG	1 cut(s)	305
BisI	GCNGC	4 cut(s)	31, 42, 45, 224
BlsI	GCNGC	4 cut(s)	32, 43, 46, 225
Bme1390I	CCNGG	1 cut(s)	282
BmgBI	CACGTC	1 cut(s)	234
BmrFI	CCNGG	1 cut(s)	282
BmrI	ACTGGG	1 cut(s)	29
BmuI	ACTGGG	1 cut(s)	29
Bpu14I	TTCGAA	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	32
BpuMI	CCSGG	1 cut(s)	282
BsaHI	GRCGYC	1 cut(s)	296
BsaJI	CCNNGG	3 cut(s)	42, 165, 281
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse118I	RCCGGY	2 cut(s)	73, 226
Bse1I	ACTGG	1 cut(s)	35
BseDI	CCNNGG	3 cut(s)	42, 165, 281
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	35
BseSI	GKGCMC	1 cut(s)	288
Bsh1236I	CGCG	2 cut(s)	44, 290
BshFI	GGCC	2 cut(s)	114, 280
BsiSI	CCGG	3 cut(s)	74, 227, 281
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	2 cut(s)	114, 280
Bsp119I	TTCGAA	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	9 cut(s)	31, 42, 44, 52, 71, 98, 224, 251, 290
BspANI	GGCC	2 cut(s)	114, 280
BspFNI	CGCG	2 cut(s)	44, 290
BspT104I	TTCGAA	1 cut(s)	204
BsrFI	RCCGGY	2 cut(s)	73, 226
BsrI	ACTGG	1 cut(s)	35
BssAI	RCCGGY	2 cut(s)	73, 226
BssECI	CCNNGG	3 cut(s)	42, 165, 281
BssNI	GRCGYC	1 cut(s)	296
BssT1I	CCWWGG	1 cut(s)	165
Bst4CI	ACNGT	2 cut(s)	184, 214
BstACI	GRCGYC	1 cut(s)	296
BstBI	TTCGAA	1 cut(s)	204
BstC8I	GCNNGC	2 cut(s)	278, 288
BstDSI	CCRYGG	2 cut(s)	42, 165
BstENI	CCTNNNNNAGG	1 cut(s)	85
BstFNI	CGCG	2 cut(s)	44, 290
BstNSI	RCATGY	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	280
BstSFI	CTRYAG	1 cut(s)	305
BstSLI	GKGCMC	1 cut(s)	288
BstUI	CGCG	2 cut(s)	44, 290
BsuRI	GGCC	2 cut(s)	114, 280
BtgI	CCRYGG	2 cut(s)	42, 165
BtrI	CACGTC	1 cut(s)	234
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	177
Cac8I	GCNNGC	2 cut(s)	278, 288
Cfr10I	RCCGGY	2 cut(s)	73, 226
Cfr42I	CCGCGG	1 cut(s)	45
CseI	GACGC	1 cut(s)	285
CviAII	CATG	2 cut(s)	65, 166
CviJI	RGCY	3 cut(s)	114, 276, 280
CviKI_1	RGCY	3 cut(s)	114, 276, 280
DraIII	CACNNNGTG	1 cut(s)	292
EaeI	YGGCCR	1 cut(s)	278
EciI	GGCGGA	1 cut(s)	266
Eco130I	CCWWGG	1 cut(s)	165
EcoNI	CCTNNNNNAGG	1 cut(s)	85
EcoRI	GAATTC	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	2 cut(s)	68, 169
FaiI	YATR	2 cut(s)	66, 167
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	2 cut(s)	64, 165
FauI	CCCGC	2 cut(s)	59, 105
FblI	GTMKAC	1 cut(s)	299
Fnu4HI	GCNGC	4 cut(s)	31, 42, 45, 224
Fsp4HI	GCNGC	4 cut(s)	31, 42, 45, 224
GluI	GCNGC	4 cut(s)	31, 42, 45, 224
HaeIII	GGCC	2 cut(s)	114, 280
HapII	CCGG	3 cut(s)	74, 227, 281
HgaI	GACGC	1 cut(s)	285
Hin1I	GRCGYC	1 cut(s)	296
Hin1II	CATG	2 cut(s)	68, 169
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HinfI	GANTC	1 cut(s)	263
HpaII	CCGG	3 cut(s)	74, 227, 281
HphI	GGTGA	3 cut(s)	49, 202, 241
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	1 cut(s)	268
Hpy8I	GTNNAC	1 cut(s)	300
Hpy99I	CGWCG	2 cut(s)	301, 304
HpyAV	CCTTC	2 cut(s)	125, 241
HpyCH4III	ACNGT	2 cut(s)	184, 214
HpyCH4IV	ACGT	1 cut(s)	233
HpyCH4V	TGCA	2 cut(s)	68, 121
HpySE526I	ACGT	1 cut(s)	233
Hsp92I	GRCGYC	1 cut(s)	296
Hsp92II	CATG	2 cut(s)	68, 169
KspI	CCGCGG	1 cut(s)	45
LpnPI	CCDG	7 cut(s)	48, 87, 94, 168, 240, 262, 294
MaeII	ACGT	1 cut(s)	233
MaeIII	GTNAC	2 cut(s)	172, 229
MboII	GAAGA	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	1 cut(s)	206
MlyI	GAGTC	1 cut(s)	272
MnlI	CCTC	5 cut(s)	7, 65, 111, 247, 266
MslI	CAYNNNNRTG	2 cut(s)	170, 182
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	3 cut(s)	74, 227, 281
MspR9I	CCNGG	1 cut(s)	282
MvnI	CGCG	2 cut(s)	44, 290
NciI	CCSGG	1 cut(s)	282
NcoI	CCATGG	1 cut(s)	165
NlaIII	CATG	2 cut(s)	68, 169
NmuCI	GTSAC	2 cut(s)	172, 229
NspI	RCATGY	1 cut(s)	68
NspV	TTCGAA	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PkrI	GCNGC	4 cut(s)	32, 43, 46, 225
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
RseI	CAYNNNNRTG	2 cut(s)	170, 182
SacII	CCGCGG	1 cut(s)	45
SalI	GTCGAC	1 cut(s)	298
SatI	GCNGC	4 cut(s)	31, 42, 45, 224
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	1 cut(s)	282
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	4 cut(s)	92, 109, 157, 236
SfcI	CTRYAG	1 cut(s)	305
Sfr303I	CCGCGG	1 cut(s)	45
SfuI	TTCGAA	1 cut(s)	204
SgrAI	CRCCGGYG	2 cut(s)	73, 226
SgrBI	CCGCGG	1 cut(s)	45
SgrDI	CGTCGACG	1 cut(s)	298
SmiMI	CAYNNNNRTG	2 cut(s)	170, 182
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	1 cut(s)	206
SsiI	CCGC	9 cut(s)	31, 42, 44, 52, 71, 98, 224, 251, 290
StyD4I	CCNGG	1 cut(s)	280
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	2 cut(s)	184, 214
TaiI	ACGT	1 cut(s)	236
TaqI	TCGA	2 cut(s)	204, 299
TasI	AATT	1 cut(s)	206
TauI	GCSGC	4 cut(s)	33, 44, 47, 226
TscAI	CASTG	1 cut(s)	177
TseFI	GTSAC	2 cut(s)	172, 229
Tsp45I	GTSAC	2 cut(s)	172, 229
TspRI	CASTG	1 cut(s)	177
XagI	CCTNNNNNAGG	1 cut(s)	85
XapI	RAATTY	1 cut(s)	206
XceI	RCATGY	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.