Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0009389

Physical Location & Seq

Genomic Coordinates Forward (+)

9900906 .. 9901373

Gene Structure 468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG110800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCAACCCTCAAGGAAATCCTAACGCGCCGCCCAGTCGCGGCGACGATCCGCCTCACCGTCCCAGCGGGCGGGGCCCGACCCGCACCTCTGGTGGGTCCGGCTCTAGGTCAATACCGCCTGAACCTGATGGCCTTCTGCAAAGACTTCAACGCCCGAACGCAGAAGTACAAACCCGACACTCCCATGGCGGTGACCATCACGGCGTTCAAGGACAACACTTTCGAGTTCACCGTCAAGTCGCCGTCGGTGACGTGGTATTTGAAGAAGGCGGCGGGGATTGAGTCGGGGAGCGGCCGGCCGGGGCACGCGGTGGCGTCGACGCTGTCGGTGAGGCACGTGTATGAGATTGCGAAGGTGAAGCAGTCGGATCCGTACTGCCAGTATATGCCGTTGGAGTCGATTTGCAAGTCGATTATTGGGACGGCGAACACCATGGGGATTCAGGTGGTGAAGGACTTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0032543 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:0098798 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

155

Amino Acids

16.89

Weight (kDa)

9.65

Isoelectric Point (pI)

36.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L11_N	PF03946	17 - 75	4.8e-22	Ribosomal protein L11, N-terminal domain
Ribosomal_L11	PF00298	80 - 150	3.9e-26	Ribosomal protein L11, RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35490 AT4G35490
fragaria_vesca	FvH4_1g10230 FvH4_1g10230 FvH4_4g16570
malus_domestica	MD02G1114300.v1.1 MD07G1093800.v1.1 MD15G1229900.v1.1
prunus_persica	Prupe.8G126100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0097051
rosa_laevigata	RLG00000016698
rosa_multiflora	Rmu_co8331479.1_g000001 Rmu_sc0006626.1_g000009 Rmu_ssc0000008.1_g000028
rosa_roxburghii	Rroxscaffold_2G00145020
rosa_rugosa	Rorug02G0063200
rosa_samantha	Rh2AG110800 Rh2BG112700 Rh2CG114900 Rh2DG114100 Rh4AG013400
rosa_wichuraiana	Rw2G008610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	294
AccI	GTMKAC	1 cut(s)	320
AccII	CGCG	3 cut(s)	28, 41, 311
AclWI	GGATC	3 cut(s)	43, 365, 378
AcoI	YGGCCR	2 cut(s)	295, 299
AcvI	CACGTG	1 cut(s)	340
AcyI	GRCGYC	1 cut(s)	317
AdeI	CACNNNGTG	1 cut(s)	313
AfaI	GTAC	2 cut(s)	170, 377
AfiI	CCNNNNNNNGG	4 cut(s)	40, 71, 95, 107
AflIII	ACRYGT	1 cut(s)	339
AgsI	TTSAA	3 cut(s)	151, 211, 265
AjiI	CACGTC	1 cut(s)	255
AlwI	GGATC	3 cut(s)	43, 365, 378
AoxI	GGCC	4 cut(s)	75, 132, 295, 299
ApaI	GGGCCC	1 cut(s)	79
ArsI	GACNNNNNNTTYG	4 cut(s)	206, 238, 244, 276
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	3 cut(s)	75, 76, 98
AsuC2I	CCSGG	1 cut(s)	303
AsuHPI	GGTGA	7 cut(s)	49, 205, 223, 262, 343, 370, 463
AvaII	GGWCC	1 cut(s)	98
BaeGI	GKGCMC	2 cut(s)	79, 309
BamHI	GGATCC	1 cut(s)	370
BanII	GRGCYC	1 cut(s)	79
BbrPI	CACGTG	1 cut(s)	340
BccI	CCATC	2 cut(s)	124, 206
BceAI	ACGGC	4 cut(s)	219, 229, 376, 441
BcnI	CCSGG	1 cut(s)	303
BfaI	CTAG	1 cut(s)	107
BisI	GCNGC	4 cut(s)	31, 42, 273, 295
BlsI	GCNGC	4 cut(s)	32, 43, 274, 296
Bme1390I	CCNGG	1 cut(s)	303
Bme18I	GGWCC	1 cut(s)	98
BmgBI	CACGTC	1 cut(s)	255
BmgT120I	GGNCC	3 cut(s)	75, 76, 98
BmiI	GGNNCC	4 cut(s)	76, 77, 99, 372
BmrFI	CCNGG	1 cut(s)	303
BmrI	ACTGGG	1 cut(s)	29
BmuI	ACTGGG	1 cut(s)	29
BpuMI	CCSGG	1 cut(s)	303
BsaAI	YACGTR	1 cut(s)	340
BsaHI	GRCGYC	1 cut(s)	317
BsaJI	CCNNGG	3 cut(s)	186, 302, 435
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 71, 95, 107
Bse118I	RCCGGY	1 cut(s)	297
Bse1I	ACTGG	2 cut(s)	35, 382
BseDI	CCNNGG	3 cut(s)	186, 302, 435
BseLI	CCNNNNNNNGG	4 cut(s)	40, 71, 95, 107
BseNI	ACTGG	2 cut(s)	35, 382
BseSI	GKGCMC	2 cut(s)	79, 309
BseX3I	CGGCCG	2 cut(s)	295, 299
BseYI	CCCAGC	1 cut(s)	64
Bsh1236I	CGCG	3 cut(s)	28, 41, 311
Bsh1285I	CGRYCG	2 cut(s)	298, 302
BshFI	GGCC	4 cut(s)	77, 134, 297, 301
BsiEI	CGRYCG	2 cut(s)	298, 302
BsiSI	CCGG	3 cut(s)	101, 298, 302
BslFI	GGGAC	2 cut(s)	47, 436
BslI	CCNNNNNNNGG	4 cut(s)	40, 71, 95, 107
BsmFI	GGGAC	2 cut(s)	47, 436
BsnI	GGCC	4 cut(s)	77, 134, 297, 301
Bsp120I	GGGCCC	1 cut(s)	75
Bsp1286I	GDGCHC	2 cut(s)	79, 309
Bsp143I	GATC	2 cut(s)	48, 370
Bsp19I	CCATGG	2 cut(s)	186, 435
BspANI	GGCC	4 cut(s)	77, 134, 297, 301
BspFNI	CGCG	3 cut(s)	28, 41, 311
BspLI	GGNNCC	4 cut(s)	76, 77, 99, 372
BspPI	GGATC	3 cut(s)	43, 365, 378
BsrBI	CCGCTC	1 cut(s)	294
BsrFI	RCCGGY	1 cut(s)	297
BsrI	ACTGG	2 cut(s)	35, 382
BssAI	RCCGGY	1 cut(s)	297
BssECI	CCNNGG	3 cut(s)	186, 302, 435
BssMI	GATC	2 cut(s)	48, 370
BssNI	GRCGYC	1 cut(s)	317
BssT1I	CCWWGG	2 cut(s)	186, 435
Bst4CI	ACNGT	2 cut(s)	61, 235
BstACI	GRCGYC	1 cut(s)	317
BstBAI	YACGTR	1 cut(s)	340
BstC8I	GCNNGC	3 cut(s)	70, 299, 309
BstDSI	CCRYGG	2 cut(s)	186, 435
BstEII	GGTNACC	1 cut(s)	193
BstFNI	CGCG	3 cut(s)	28, 41, 311
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	2 cut(s)	51, 373
BstMBI	GATC	2 cut(s)	48, 370
BstMCI	CGRYCG	2 cut(s)	298, 302
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 83
BstPI	GGTNACC	1 cut(s)	193
BstSCI	CCNGG	1 cut(s)	301
BstSLI	GKGCMC	2 cut(s)	79, 309
BstUI	CGCG	3 cut(s)	28, 41, 311
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BstZI	CGGCCG	2 cut(s)	295, 299
BsuRI	GGCC	4 cut(s)	77, 134, 297, 301
BtgI	CCRYGG	2 cut(s)	186, 435
BtrI	CACGTC	1 cut(s)	255
Cac8I	GCNNGC	3 cut(s)	70, 299, 309
CfoI	GCGC	1 cut(s)	30
Cfr10I	RCCGGY	1 cut(s)	297
Cfr13I	GGNCC	3 cut(s)	75, 76, 98
CseI	GACGC	2 cut(s)	306, 331
Csp6I	GTAC	2 cut(s)	169, 376
CviAII	CATG	2 cut(s)	187, 436
CviJI	RGCY	5 cut(s)	77, 104, 134, 297, 301
CviKI_1	RGCY	5 cut(s)	77, 104, 134, 297, 301
CviQI	GTAC	2 cut(s)	169, 376
DpnI	GATC	2 cut(s)	50, 372
DpnII	GATC	2 cut(s)	48, 370
DraIII	CACNNNGTG	1 cut(s)	313
EaeI	YGGCCR	2 cut(s)	295, 299
EagI	CGGCCG	2 cut(s)	295, 299
EciI	GGCGGA	1 cut(s)	41
EclXI	CGGCCG	2 cut(s)	295, 299
Eco130I	CCWWGG	2 cut(s)	186, 435
Eco24I	GRGCYC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	98
Eco52I	CGGCCG	2 cut(s)	295, 299
Eco72I	CACGTG	1 cut(s)	340
Eco91I	GGTNACC	1 cut(s)	193
EcoO109I	RGGNCCY	1 cut(s)	75
EcoO65I	GGTNACC	1 cut(s)	193
EcoT14I	CCWWGG	2 cut(s)	186, 435
EcoT38I	GRGCYC	1 cut(s)	79
ErhI	CCWWGG	2 cut(s)	186, 435
FaeI	CATG	2 cut(s)	190, 439
FaiI	YATR	5 cut(s)	188, 345, 387, 389, 437
FaqI	GGGAC	2 cut(s)	47, 436
FatI	CATG	2 cut(s)	186, 435
FauI	CCCGC	4 cut(s)	61, 65, 91, 268
FblI	GTMKAC	1 cut(s)	320
Fnu4HI	GCNGC	4 cut(s)	31, 42, 273, 295
FriOI	GRGCYC	1 cut(s)	79
FseI	GGCCGGCC	1 cut(s)	301
Fsp4HI	GCNGC	4 cut(s)	31, 42, 273, 295
FspBI	CTAG	1 cut(s)	107
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	4 cut(s)	31, 42, 273, 295
GsaI	CCCAGC	1 cut(s)	68
HaeIII	GGCC	4 cut(s)	77, 134, 297, 301
HapII	CCGG	3 cut(s)	101, 298, 302
HgaI	GACGC	2 cut(s)	306, 331
HhaI	GCGC	1 cut(s)	30
Hin1I	GRCGYC	1 cut(s)	317
Hin1II	CATG	2 cut(s)	190, 439
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HinfI	GANTC	3 cut(s)	284, 398, 442
HpaII	CCGG	3 cut(s)	101, 298, 302
HphI	GGTGA	7 cut(s)	49, 205, 223, 262, 343, 370, 463
Hpy166II	GTNNAC	2 cut(s)	231, 321
Hpy188I	TCNGA	1 cut(s)	370
Hpy8I	GTNNAC	2 cut(s)	231, 321
Hpy99I	CGWCG	4 cut(s)	49, 250, 322, 325
HpyAV	CCTTC	4 cut(s)	145, 262, 349, 448
HpyCH4III	ACNGT	2 cut(s)	61, 235
HpyCH4IV	ACGT	2 cut(s)	254, 339
HpyCH4V	TGCA	2 cut(s)	141, 408
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 83
HpySE526I	ACGT	2 cut(s)	254, 339
Hsp92I	GRCGYC	1 cut(s)	317
Hsp92II	CATG	2 cut(s)	190, 439
HspAI	GCGC	1 cut(s)	28
KroI	GCCGGC	1 cut(s)	297
KroNI	GCCGGC	1 cut(s)	299
Kzo9I	GATC	2 cut(s)	48, 370
LmnI	GCTCC	1 cut(s)	291
MaeI	CTAG	1 cut(s)	107
MaeII	ACGT	2 cut(s)	254, 339
MaeIII	GTNAC	2 cut(s)	193, 250
MalI	GATC	2 cut(s)	50, 372
MbiI	CCGCTC	1 cut(s)	294
MboI	GATC	2 cut(s)	48, 370
MboII	GAAGA	1 cut(s)	277
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	2 cut(s)	79, 309
MlyI	GAGTC	2 cut(s)	293, 407
MmeI	TCCRAC	2 cut(s)	348, 375
MnlI	CCTC	4 cut(s)	20, 65, 99, 327
MroNI	GCCGGC	1 cut(s)	297
MslI	CAYNNNNRTG	3 cut(s)	185, 191, 342
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	3 cut(s)	101, 298, 302
MspR9I	CCNGG	1 cut(s)	303
MvnI	CGCG	3 cut(s)	28, 41, 311
MwoI	GCNNNNNNNGC	2 cut(s)	74, 83
NaeI	GCCGGC	1 cut(s)	299
NciI	CCSGG	1 cut(s)	303
NcoI	CCATGG	2 cut(s)	186, 435
NdeII	GATC	2 cut(s)	48, 370
NgoMIV	GCCGGC	1 cut(s)	297
NlaIII	CATG	2 cut(s)	190, 439
NlaIV	GGNNCC	4 cut(s)	76, 77, 99, 372
NmuCI	GTSAC	2 cut(s)	193, 250
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PdiI	GCCGGC	1 cut(s)	299
PfeI	GAWTC	1 cut(s)	442
PflFI	GACNNNGTC	1 cut(s)	325
PkrI	GCNGC	4 cut(s)	32, 43, 274, 296
PleI	GAGTC	2 cut(s)	292, 406
PmaCI	CACGTG	1 cut(s)	340
PmlI	CACGTG	1 cut(s)	340
PpsI	GAGTC	2 cut(s)	292, 406
Ppu21I	YACGTR	1 cut(s)	340
PspCI	CACGTG	1 cut(s)	340
PspEI	GGTNACC	1 cut(s)	193
PspFI	CCCAGC	1 cut(s)	64
PspN4I	GGNNCC	4 cut(s)	76, 77, 99, 372
PspOMI	GGGCCC	1 cut(s)	75
PspPI	GGNCC	3 cut(s)	75, 76, 98
PsuI	RGATCY	1 cut(s)	370
PsyI	GACNNNGTC	1 cut(s)	325
RigI	GGCCGGCC	1 cut(s)	301
RsaI	GTAC	2 cut(s)	170, 377
RsaNI	GTAC	2 cut(s)	169, 376
RseI	CAYNNNNRTG	3 cut(s)	185, 191, 342
SalI	GTCGAC	1 cut(s)	319
SatI	GCNGC	4 cut(s)	31, 42, 273, 295
Sau3AI	GATC	2 cut(s)	48, 370
Sau96I	GGNCC	3 cut(s)	75, 76, 98
SchI	GAGTC	2 cut(s)	293, 407
ScrFI	CCNGG	1 cut(s)	303
SduI	GDGCHC	2 cut(s)	79, 309
SetI	ASST	7 cut(s)	91, 112, 129, 257, 342, 360, 450
SgrDI	CGTCGACG	1 cut(s)	319
SinI	GGWCC	1 cut(s)	98
SmiMI	CAYNNNNRTG	3 cut(s)	185, 191, 342
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
SspMI	CTAG	1 cut(s)	107
StyD4I	CCNGG	1 cut(s)	301
StyI	CCWWGG	2 cut(s)	186, 435
TaaI	ACNGT	2 cut(s)	61, 235
TaiI	ACGT	2 cut(s)	257, 342
TaqI	TCGA	4 cut(s)	225, 320, 401, 413
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	4 cut(s)	33, 44, 275, 297
TfiI	GAWTC	1 cut(s)	442
TseFI	GTSAC	2 cut(s)	193, 250
Tsp45I	GTSAC	2 cut(s)	193, 250
TspGWI	ACGGA	1 cut(s)	363
Tth111I	GACNNNGTC	1 cut(s)	325
VpaK11BI	GGWCC	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	320
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.