Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0009389

Physical Location & Seq

Genomic Coordinates Forward (+)

10073866 .. 10074141

Gene Structure 276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1093800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGCTTTCTGCAAGGACTTCAACGGTCGGACCCAAAAGTACAAACCCGACACGCCCATGGCGGTGATCATCACCGCCTTCAAAGACAACACATTCGAGTTCACGATGAGGTCGCTGTCTGTCACATGGTACCTGAAGAAGGCGGCCGGGATCGACTCCGGCAGCAGCCGTCCTGGACACGCGGTGACGTCGACGCTGTCGGTGAGACACGTGTACGAGATCGCAAAGGTGAGGGCTGGCGCTAGGGAGTCTGCTTACCAGAGATATGATATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 ko05416 map03013 map05416

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

92

Amino Acids

10.26

Weight (kDa)

9.72

Isoelectric Point (pI)

15.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L11_N	PF03946	1 - 32	3.1e-07	Ribosomal protein L11, N-terminal domain
Ribosomal_L11	PF00298	40 - 79	1.2e-10	Ribosomal protein L11, RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35490 AT4G35490
fragaria_vesca	FvH4_1g10230 FvH4_1g10230 FvH4_4g16570
malus_domestica	MD02G1114300.v1.1 MD07G1093800.v1.1 MD15G1229900.v1.1
prunus_persica	Prupe.8G126100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0097051
rosa_laevigata	RLG00000016698
rosa_multiflora	Rmu_co8331479.1_g000001 Rmu_sc0006626.1_g000009 Rmu_ssc0000008.1_g000028
rosa_roxburghii	Rroxscaffold_2G00145020
rosa_rugosa	Rorug02G0063200
rosa_samantha	Rh2AG110800 Rh2BG112700 Rh2CG114900 Rh2DG114100 Rh4AG013400
rosa_wichuraiana	Rw2G008610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	191
Acc65I	GGTACC	1 cut(s)	129
AccB1I	GGYRCC	1 cut(s)	129
AccI	GTMKAC	1 cut(s)	191
AccII	CGCG	1 cut(s)	182
AciI	CCGC	4 cut(s)	62, 75, 143, 182
AclWI	GGATC	1 cut(s)	158
AcoI	YGGCCR	1 cut(s)	144
AcuI	CTGAAG	1 cut(s)	155
AcvI	CACGTG	1 cut(s)	211
AcyI	GRCGYC	1 cut(s)	188
AdeI	CACNNNGTG	1 cut(s)	184
AfaI	GTAC	3 cut(s)	41, 131, 215
AfiI	CCNNNNNNNGG	1 cut(s)	139
AflIII	ACRYGT	2 cut(s)	208, 210
AgsI	TTSAA	2 cut(s)	22, 82
AjnI	CCWGG	1 cut(s)	172
Alw26I	GTCTC	1 cut(s)	199
AlwI	GGATC	1 cut(s)	158
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	2 cut(s)	162, 165
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
Asp718I	GGTACC	1 cut(s)	129
AspLEI	GCGC	1 cut(s)	242
AspS9I	GGNCC	1 cut(s)	30
AsuC2I	CCSGG	1 cut(s)	148
AsuHPI	GGTGA	5 cut(s)	64, 76, 196, 214, 241
AvaII	GGWCC	1 cut(s)	30
BanI	GGYRCC	1 cut(s)	129
BbrPI	CACGTG	1 cut(s)	211
BbvI	GCAGC	2 cut(s)	174, 177
BceAI	ACGGC	1 cut(s)	153
BciT130I	CCWGG	1 cut(s)	174
BclI	TGATCA	1 cut(s)	66
BcnI	CCSGG	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	199
BfaI	CTAG	2 cut(s)	243, 274
BfoI	RGCGCY	1 cut(s)	243
BisI	GCNGC	3 cut(s)	144, 163, 166
BlsI	GCNGC	3 cut(s)	145, 164, 167
Bme1390I	CCNGG	2 cut(s)	148, 174
Bme18I	GGWCC	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	2 cut(s)	32, 131
BmrFI	CCNGG	2 cut(s)	148, 174
BpuMI	CCSGG	1 cut(s)	148
BsaAI	YACGTR	1 cut(s)	211
BsaHI	GRCGYC	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseX3I	CGGCCG	1 cut(s)	144
BseXI	GCAGC	2 cut(s)	174, 177
Bsh1236I	CGCG	1 cut(s)	182
Bsh1285I	CGRYCG	2 cut(s)	28, 147
BshFI	GGCC	1 cut(s)	146
BshNI	GGYRCC	1 cut(s)	129
BsiEI	CGRYCG	2 cut(s)	28, 147
BsiSI	CCGG	2 cut(s)	147, 159
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmAI	GTCTC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	146
Bsp143I	GATC	3 cut(s)	66, 150, 219
Bsp19I	CCATGG	1 cut(s)	57
BspACI	CCGC	4 cut(s)	62, 75, 143, 182
BspANI	GGCC	1 cut(s)	146
BspFNI	CGCG	1 cut(s)	182
BspLI	GGNNCC	2 cut(s)	32, 131
BspPI	GGATC	1 cut(s)	158
BspT107I	GGYRCC	1 cut(s)	129
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	3 cut(s)	66, 150, 219
BssNI	GRCGYC	1 cut(s)	188
BssT1I	CCWWGG	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	26
BstACI	GRCGYC	1 cut(s)	188
BstBAI	YACGTR	1 cut(s)	211
BstC8I	GCNNGC	1 cut(s)	238
BstDSI	CCRYGG	1 cut(s)	57
BstENI	CCTNNNNNAGG	1 cut(s)	137
BstFNI	CGCG	1 cut(s)	182
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	3 cut(s)	69, 153, 222
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	3 cut(s)	66, 150, 219
BstMCI	CGRYCG	2 cut(s)	28, 147
BstNI	CCWGG	1 cut(s)	174
BstSCI	CCNGG	2 cut(s)	146, 172
BstUI	CGCG	1 cut(s)	182
BstV1I	GCAGC	2 cut(s)	174, 177
BstZI	CGGCCG	1 cut(s)	144
BsuRI	GGCC	1 cut(s)	146
BtgI	CCRYGG	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	238
CfoI	GCGC	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	30
CseI	GACGC	1 cut(s)	202
Csp6I	GTAC	3 cut(s)	40, 130, 214
CviAII	CATG	2 cut(s)	58, 126
CviJI	RGCY	4 cut(s)	5, 146, 168, 236
CviKI_1	RGCY	4 cut(s)	5, 146, 168, 236
CviQI	GTAC	3 cut(s)	40, 130, 214
DpnI	GATC	3 cut(s)	68, 152, 221
DpnII	GATC	3 cut(s)	66, 150, 219
DraIII	CACNNNGTG	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	144
EagI	CGGCCG	1 cut(s)	144
EclXI	CGGCCG	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	57
Eco32I	GATATC	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	30
Eco52I	CGGCCG	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	155
Eco72I	CACGTG	1 cut(s)	211
EcoNI	CCTNNNNNAGG	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	172
EcoRV	GATATC	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	2 cut(s)	61, 129
FaiI	YATR	3 cut(s)	59, 127, 267
FatI	CATG	2 cut(s)	57, 125
FbaI	TGATCA	1 cut(s)	66
FblI	GTMKAC	1 cut(s)	191
Fnu4HI	GCNGC	3 cut(s)	144, 163, 166
Fsp4HI	GCNGC	3 cut(s)	144, 163, 166
FspBI	CTAG	2 cut(s)	243, 274
GlaI	GCGC	1 cut(s)	241
GluI	GCNGC	3 cut(s)	144, 163, 166
HaeII	RGCGCY	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	2 cut(s)	147, 159
HgaI	GACGC	1 cut(s)	202
HhaI	GCGC	1 cut(s)	242
Hin1I	GRCGYC	1 cut(s)	188
Hin1II	CATG	2 cut(s)	61, 129
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HincII	GTYRAC	1 cut(s)	192
HindII	GTYRAC	1 cut(s)	192
HinfI	GANTC	2 cut(s)	155, 248
HpaII	CCGG	2 cut(s)	147, 159
HphI	GGTGA	5 cut(s)	64, 76, 196, 214, 241
Hpy166II	GTNNAC	3 cut(s)	102, 192, 214
Hpy188I	TCNGA	1 cut(s)	30
Hpy188III	TCNNGA	1 cut(s)	103
Hpy8I	GTNNAC	3 cut(s)	102, 192, 214
Hpy99I	CGWCG	2 cut(s)	193, 196
HpyAV	CCTTC	2 cut(s)	88, 133
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4IV	ACGT	2 cut(s)	188, 210
HpyCH4V	TGCA	1 cut(s)	12
HpySE526I	ACGT	2 cut(s)	188, 210
Hsp92I	GRCGYC	1 cut(s)	188
Hsp92II	CATG	2 cut(s)	61, 129
HspAI	GCGC	1 cut(s)	240
KpnI	GGTACC	1 cut(s)	133
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	3 cut(s)	66, 150, 219
LpnPI	CCDG	7 cut(s)	146, 159, 160, 172, 186, 222, 272
Lsp1109I	GCAGC	2 cut(s)	174, 177
MaeI	CTAG	2 cut(s)	243, 274
MaeII	ACGT	2 cut(s)	188, 210
MaeIII	GTNAC	2 cut(s)	121, 184
MalI	GATC	3 cut(s)	68, 152, 221
MboI	GATC	3 cut(s)	66, 150, 219
MboII	GAAGA	1 cut(s)	148
MlyI	GAGTC	2 cut(s)	149, 257
MmeI	TCCRAC	1 cut(s)	8
MnlI	CCTC	2 cut(s)	102, 225
MslI	CAYNNNNRTG	2 cut(s)	56, 62
MspI	CCGG	2 cut(s)	147, 159
MspR9I	CCNGG	2 cut(s)	148, 174
MvaI	CCWGG	1 cut(s)	174
MvnI	CGCG	1 cut(s)	182
NciI	CCSGG	1 cut(s)	148
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	3 cut(s)	66, 150, 219
NlaIII	CATG	2 cut(s)	61, 129
NlaIV	GGNNCC	2 cut(s)	32, 131
NmuCI	GTSAC	2 cut(s)	121, 184
PflFI	GACNNNGTC	1 cut(s)	196
PfoI	TCCNGGA	1 cut(s)	172
PkrI	GCNGC	3 cut(s)	145, 164, 167
PleI	GAGTC	2 cut(s)	149, 256
PmaCI	CACGTG	1 cut(s)	211
PmlI	CACGTG	1 cut(s)	211
PpsI	GAGTC	2 cut(s)	149, 256
Ppu21I	YACGTR	1 cut(s)	211
Psp6I	CCWGG	1 cut(s)	172
PspCI	CACGTG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	2 cut(s)	32, 131
PspPI	GGNCC	1 cut(s)	30
PsyI	GACNNNGTC	1 cut(s)	196
RsaI	GTAC	3 cut(s)	41, 131, 215
RsaNI	GTAC	3 cut(s)	40, 130, 214
RseI	CAYNNNNRTG	2 cut(s)	56, 62
SalI	GTCGAC	1 cut(s)	190
SatI	GCNGC	3 cut(s)	144, 163, 166
Sau3AI	GATC	3 cut(s)	66, 150, 219
Sau96I	GGNCC	1 cut(s)	30
SchI	GAGTC	2 cut(s)	149, 257
ScrFI	CCNGG	2 cut(s)	148, 174
SetI	ASST	5 cut(s)	113, 135, 191, 213, 231
SgrDI	CGTCGACG	1 cut(s)	190
SinI	GGWCC	1 cut(s)	30
SmiMI	CAYNNNNRTG	2 cut(s)	56, 62
SsiI	CCGC	4 cut(s)	62, 75, 143, 182
SspMI	CTAG	2 cut(s)	243, 274
StyD4I	CCNGG	2 cut(s)	146, 172
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	1 cut(s)	26
TaiI	ACGT	2 cut(s)	191, 213
TaqI	TCGA	3 cut(s)	96, 153, 191
TatI	WGTACW	1 cut(s)	39
TauI	GCSGC	1 cut(s)	146
TseFI	GTSAC	2 cut(s)	121, 184
TseI	GCWGC	2 cut(s)	162, 165
Tsp45I	GTSAC	2 cut(s)	121, 184
Tth111I	GACNNNGTC	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	30
XagI	CCTNNNNNAGG	1 cut(s)	137
XmiI	GTMKAC	1 cut(s)	191
XspI	CTAG	2 cut(s)	243, 274
ZraI	GACGTC	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.