Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009389

Physical Location & Seq

Genomic Coordinates Forward (+)

18844741 .. 18845100

Gene Structure 360 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1229900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCAACCCTGAAGGAAATCCTAACCCGACGACCCGTGGCGGCGACGATCCGCCTCACAGTCCCGGCGGGAGCCGCCCGACCCGTAGCTCCGGTGGGTCCCGCTCTGGGTCAATACAGGCTAAACCTGATGGCCTTCTGCAAGGACTTCAACGCCCGGACCCAGAAGTACAAACCCGAAACCCCCATGGCAGTGATCATCACCGCCTTCAAAGACAACACCTTCGAGTTCACTGTGAGGTCGCCGTCCGTCACCTGGTACTTGAAGAAGGCCGCCGGGATCGAGTCTGGCAGCAGTCGTCCAGGACACGCGGTGGTCGACGCTATCGGTGAGGCACGTGTTACGAGACAAGAGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0032543 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:0098798 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

120

Amino Acids

12.92

Weight (kDa)

10.16

Isoelectric Point (pI)

45.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L11_N	PF03946	17 - 75	6.7e-22	Ribosomal protein L11, N-terminal domain
Ribosomal_L11	PF00298	81 - 109	3.7e-06	Ribosomal protein L11, RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35490 AT4G35490
fragaria_vesca	FvH4_1g10230 FvH4_1g10230 FvH4_4g16570
malus_domestica	MD02G1114300.v1.1 MD07G1093800.v1.1 MD15G1229900.v1.1
prunus_persica	Prupe.8G126100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0097051
rosa_laevigata	RLG00000016698
rosa_multiflora	Rmu_co8331479.1_g000001 Rmu_sc0006626.1_g000009 Rmu_ssc0000008.1_g000028
rosa_roxburghii	Rroxscaffold_2G00145020
rosa_rugosa	Rorug02G0063200
rosa_samantha	Rh2AG110800 Rh2BG112700 Rh2CG114900 Rh2DG114100 Rh4AG013400
rosa_wichuraiana	Rw2G008610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	104
AccI	GTMKAC	1 cut(s)	318
AccII	CGCG	1 cut(s)	311
AciI	CCGC	8 cut(s)	41, 52, 68, 75, 102, 204, 273, 311
AclWI	GGATC	2 cut(s)	43, 287
AcuI	CTGAAG	1 cut(s)	32
AcvI	CACGTG	1 cut(s)	338
AdeI	CACNNNGTG	1 cut(s)	313
AfaI	GTAC	2 cut(s)	170, 260
AfiI	CCNNNNNNNGG	2 cut(s)	107, 255
AflIII	ACRYGT	1 cut(s)	337
AgsI	TTSAA	3 cut(s)	151, 211, 265
AjnI	CCWGG	2 cut(s)	254, 301
AluBI	AGCT	1 cut(s)	89
AluI	AGCT	1 cut(s)	89
Alw26I	GTCTC	1 cut(s)	340
AlwI	GGATC	2 cut(s)	43, 287
AoxI	GGCC	2 cut(s)	132, 270
ApeKI	GCWGC	1 cut(s)	291
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
AspS9I	GGNCC	2 cut(s)	98, 159
AsuC2I	CCSGG	3 cut(s)	65, 157, 277
AsuHPI	GGTGA	3 cut(s)	193, 244, 341
AvaII	GGWCC	2 cut(s)	98, 159
BbrPI	CACGTG	1 cut(s)	338
BbvI	GCAGC	1 cut(s)	303
BccI	CCATC	1 cut(s)	124
BceAI	ACGGC	1 cut(s)	229
BciT130I	CCWGG	2 cut(s)	256, 303
BclI	TGATCA	1 cut(s)	195
BcnI	CCSGG	3 cut(s)	65, 157, 277
BcoDI	GTCTC	1 cut(s)	340
BisI	GCNGC	4 cut(s)	42, 75, 273, 292
BlsI	GCNGC	4 cut(s)	43, 76, 274, 293
Bme1390I	CCNGG	5 cut(s)	65, 157, 256, 277, 303
Bme18I	GGWCC	2 cut(s)	98, 159
BmgT120I	GGNCC	2 cut(s)	98, 159
BmiI	GGNNCC	4 cut(s)	73, 99, 100, 161
BmrFI	CCNGG	5 cut(s)	65, 157, 256, 277, 303
BpuMI	CCSGG	3 cut(s)	65, 157, 277
BsaAI	YACGTR	1 cut(s)	338
BsaJI	CCNNGG	2 cut(s)	36, 186
BsaWI	WCCGGW	1 cut(s)	91
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 255
BseBI	CCWGG	2 cut(s)	256, 303
BseDI	CCNNGG	2 cut(s)	36, 186
BseLI	CCNNNNNNNGG	2 cut(s)	107, 255
BseXI	GCAGC	1 cut(s)	303
Bsh1236I	CGCG	1 cut(s)	311
BshFI	GGCC	2 cut(s)	134, 272
BsiSI	CCGG	4 cut(s)	65, 92, 157, 276
BslFI	GGGAC	2 cut(s)	47, 84
BslI	CCNNNNNNNGG	2 cut(s)	107, 255
BsmAI	GTCTC	1 cut(s)	340
BsmFI	GGGAC	2 cut(s)	47, 84
BsnI	GGCC	2 cut(s)	134, 272
Bsp143I	GATC	3 cut(s)	48, 195, 279
Bsp19I	CCATGG	1 cut(s)	186
BspACI	CCGC	8 cut(s)	41, 52, 68, 75, 102, 204, 273, 311
BspANI	GGCC	2 cut(s)	134, 272
BspFNI	CGCG	1 cut(s)	311
BspLI	GGNNCC	4 cut(s)	73, 99, 100, 161
BspPI	GGATC	2 cut(s)	43, 287
BsrBI	CCGCTC	1 cut(s)	104
BssECI	CCNNGG	2 cut(s)	36, 186
BssMI	GATC	3 cut(s)	48, 195, 279
BssT1I	CCWWGG	1 cut(s)	186
Bst2UI	CCWGG	2 cut(s)	256, 303
Bst4CI	ACNGT	2 cut(s)	61, 235
BstBAI	YACGTR	1 cut(s)	338
BstDSI	CCRYGG	2 cut(s)	36, 186
BstFNI	CGCG	1 cut(s)	311
BstKTI	GATC	3 cut(s)	51, 198, 282
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	3 cut(s)	48, 195, 279
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNI	CCWGG	2 cut(s)	256, 303
BstSCI	CCNGG	5 cut(s)	63, 155, 254, 275, 301
BstUI	CGCG	1 cut(s)	311
BstV1I	GCAGC	1 cut(s)	303
BsuRI	GGCC	2 cut(s)	134, 272
BtgI	CCRYGG	2 cut(s)	36, 186
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	2 cut(s)	198, 231
Cfr13I	GGNCC	2 cut(s)	98, 159
CseI	GACGC	1 cut(s)	329
CsiI	ACCWGGT	1 cut(s)	254
Csp6I	GTAC	2 cut(s)	169, 259
CviAII	CATG	1 cut(s)	187
CviJI	RGCY	5 cut(s)	74, 89, 121, 134, 272
CviKI_1	RGCY	5 cut(s)	74, 89, 121, 134, 272
CviQI	GTAC	2 cut(s)	169, 259
DpnI	GATC	3 cut(s)	50, 197, 281
DpnII	GATC	3 cut(s)	48, 195, 279
DraIII	CACNNNGTG	1 cut(s)	313
EciI	GGCGGA	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	186
Eco47I	GGWCC	2 cut(s)	98, 159
Eco57I	CTGAAG	1 cut(s)	32
Eco72I	CACGTG	1 cut(s)	338
EcoO109I	RGGNCCY	1 cut(s)	98
EcoRII	CCWGG	2 cut(s)	254, 301
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	1 cut(s)	190
FaiI	YATR	1 cut(s)	188
FaqI	GGGAC	2 cut(s)	47, 84
FatI	CATG	1 cut(s)	186
FauI	CCCGC	2 cut(s)	61, 109
FbaI	TGATCA	1 cut(s)	195
FblI	GTMKAC	1 cut(s)	318
Fnu4HI	GCNGC	4 cut(s)	42, 75, 273, 292
Fsp4HI	GCNGC	4 cut(s)	42, 75, 273, 292
GluI	GCNGC	4 cut(s)	42, 75, 273, 292
HaeIII	GGCC	2 cut(s)	134, 272
HapII	CCGG	4 cut(s)	65, 92, 157, 276
HgaI	GACGC	1 cut(s)	329
Hin1II	CATG	1 cut(s)	190
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	1 cut(s)	284
HpaII	CCGG	4 cut(s)	65, 92, 157, 276
HphI	GGTGA	3 cut(s)	193, 244, 341
Hpy166II	GTNNAC	2 cut(s)	231, 319
Hpy8I	GTNNAC	2 cut(s)	231, 319
Hpy99I	CGWCG	3 cut(s)	33, 49, 323
HpyAV	CCTTC	5 cut(s)	7, 145, 217, 232, 262
HpyCH4III	ACNGT	2 cut(s)	61, 235
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	1 cut(s)	141
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpySE526I	ACGT	1 cut(s)	337
Hsp92II	CATG	1 cut(s)	190
KflI	GGGWCCC	1 cut(s)	98
Ksp22I	TGATCA	1 cut(s)	195
Kzo9I	GATC	3 cut(s)	48, 195, 279
LmnI	GCTCC	2 cut(s)	71, 94
Lsp1109I	GCAGC	1 cut(s)	303
MabI	ACCWGGT	1 cut(s)	254
MaeII	ACGT	1 cut(s)	337
MaeIII	GTNAC	2 cut(s)	250, 340
MalI	GATC	3 cut(s)	50, 197, 281
MbiI	CCGCTC	1 cut(s)	104
MboI	GATC	3 cut(s)	48, 195, 279
MboII	GAAGA	1 cut(s)	277
MlyI	GAGTC	1 cut(s)	293
MnlI	CCTC	4 cut(s)	65, 231, 325, 346
MslI	CAYNNNNRTG	1 cut(s)	191
MspI	CCGG	4 cut(s)	65, 92, 157, 276
MspR9I	CCNGG	5 cut(s)	65, 157, 256, 277, 303
MvaI	CCWGG	2 cut(s)	256, 303
MvnI	CGCG	1 cut(s)	311
MwoI	GCNNNNNNNGC	1 cut(s)	74
NciI	CCSGG	3 cut(s)	65, 157, 277
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	3 cut(s)	48, 195, 279
NlaIII	CATG	1 cut(s)	190
NlaIV	GGNNCC	4 cut(s)	73, 99, 100, 161
NmuCI	GTSAC	1 cut(s)	250
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PfoI	TCCNGGA	1 cut(s)	301
PkrI	GCNGC	4 cut(s)	43, 76, 274, 293
PleI	GAGTC	1 cut(s)	292
PmaCI	CACGTG	1 cut(s)	338
PmlI	CACGTG	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	292
Ppu21I	YACGTR	1 cut(s)	338
PpuMI	RGGWCCY	1 cut(s)	98
Psp5II	RGGWCCY	1 cut(s)	98
Psp6I	CCWGG	2 cut(s)	254, 301
PspCI	CACGTG	1 cut(s)	338
PspGI	CCWGG	2 cut(s)	254, 301
PspN4I	GGNNCC	4 cut(s)	73, 99, 100, 161
PspPI	GGNCC	2 cut(s)	98, 159
PspPPI	RGGWCCY	1 cut(s)	98
RsaI	GTAC	2 cut(s)	170, 260
RsaNI	GTAC	2 cut(s)	169, 259
RseI	CAYNNNNRTG	1 cut(s)	191
SalI	GTCGAC	1 cut(s)	317
SatI	GCNGC	4 cut(s)	42, 75, 273, 292
Sau3AI	GATC	3 cut(s)	48, 195, 279
Sau96I	GGNCC	2 cut(s)	98, 159
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	5 cut(s)	65, 157, 256, 277, 303
SetI	ASST	6 cut(s)	91, 129, 224, 242, 257, 340
SexAI	ACCWGGT	1 cut(s)	254
SinI	GGWCC	2 cut(s)	98, 159
SmiMI	CAYNNNNRTG	1 cut(s)	191
SsiI	CCGC	8 cut(s)	41, 52, 68, 75, 102, 204, 273, 311
StyD4I	CCNGG	5 cut(s)	63, 155, 254, 275, 301
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	2 cut(s)	61, 235
TaiI	ACGT	1 cut(s)	340
TaqI	TCGA	3 cut(s)	225, 282, 318
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	3 cut(s)	44, 77, 275
TscAI	CASTG	2 cut(s)	198, 238
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	1 cut(s)	291
Tsp45I	GTSAC	1 cut(s)	250
TspGWI	ACGGA	1 cut(s)	238
TspRI	CASTG	2 cut(s)	198, 238
VpaK11BI	GGWCC	2 cut(s)	98, 159
XmiI	GTMKAC	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.