Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006626.1

Orthogroup ID

OG0009389

Physical Location & Seq

Genomic Coordinates Forward (+)

42301 .. 44321

Gene Structure 2021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006626.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atgccttgcaccttatcattcaccatagacaacgaatcgaagaagattactgtagcagttcggcatttccggcgttatcttccgattccggccgtcttcggccaccaaaccggtgtcgaaggtacttctactcattttctgactttgtctcagttgagaaagttgttgggtctgttgagtaagtgctgctaccaaaatttggtggccatcagagctggtggcagcgccaacattgtgggcggcggaaatcctaacacgctgcctagtcgccgcggcgatccacctccctcgacccgcctcacccgacatgcaccgtcggtgtccggctttaggtcagtcccgcttcaacctaatggtcttctgcaaagacttcaatgcccaacgcagaagcacaaacccgatactcccatggtagtgaccattacggtgttcaaggacaacactttcgaattcaccatcaagtcgccttcggtgacgtggtatttgaagaaggcggcggggattgagtccgagaaaggctggccggggcacgcggtggcgtcgacgctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0032543 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:0098798 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

183

Amino Acids

19.96

Weight (kDa)

10.14

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35490 AT4G35490
fragaria_vesca	FvH4_1g10230 FvH4_1g10230 FvH4_4g16570
malus_domestica	MD02G1114300.v1.1 MD07G1093800.v1.1 MD15G1229900.v1.1
prunus_persica	Prupe.8G126100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0097051
rosa_laevigata	RLG00000016698
rosa_multiflora	Rmu_co8331479.1_g000001 Rmu_sc0006626.1_g000009 Rmu_ssc0000008.1_g000028
rosa_roxburghii	Rroxscaffold_2G00145020
rosa_rugosa	Rorug02G0063200
rosa_samantha	Rh2AG110800 Rh2BG112700 Rh2CG114900 Rh2DG114100 Rh4AG013400
rosa_wichuraiana	Rw2G008610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	199
AccI	GTMKAC	1 cut(s)	542
AccII	CGCG	2 cut(s)	273, 533
AciI	CCGC	9 cut(s)	240, 243, 271, 273, 295, 341, 494, 497, 533
AclWI	GGATC	1 cut(s)	272
AcoI	YGGCCR	4 cut(s)	90, 100, 204, 521
AcsI	RAATTY	2 cut(s)	196, 449
AcyI	GRCGYC	1 cut(s)	539
AdeI	CACNNNGTG	1 cut(s)	535
AfaI	GTAC	1 cut(s)	124
AfiI	CCNNNNNNNGG	2 cut(s)	199, 330
AgeI	ACCGGT	1 cut(s)	110
AgsI	TTSAA	4 cut(s)	347, 374, 433, 487
AjiI	CACGTC	1 cut(s)	477
AluBI	AGCT	1 cut(s)	215
AluI	AGCT	1 cut(s)	215
Alw26I	GTCTC	1 cut(s)	153
AlwI	GGATC	1 cut(s)	272
AoxI	GGCC	4 cut(s)	90, 100, 204, 521
ApeKI	GCWGC	3 cut(s)	186, 222, 259
ApoI	RAATTY	2 cut(s)	196, 449
ArsI	GACNNNNNNTTYG	4 cut(s)	428, 460, 466, 498
AsiGI	ACCGGT	1 cut(s)	110
AspLEI	GCGC	1 cut(s)	227
AsuC2I	CCSGG	1 cut(s)	525
AsuHPI	GGTGA	4 cut(s)	13, 292, 445, 484
AsuII	TTCGAA	1 cut(s)	447
BaeGI	GKGCMC	1 cut(s)	531
BalI	TGGCCA	1 cut(s)	206
BbsI	GAAGAC	2 cut(s)	88, 350
BbvI	GCAGC	3 cut(s)	173, 234, 246
BccI	CCATC	2 cut(s)	215, 464
BceAI	ACGGC	1 cut(s)	77
BcnI	CCSGG	1 cut(s)	525
BcoDI	GTCTC	1 cut(s)	153
BfaI	CTAG	1 cut(s)	264
BfmI	CTRYAG	2 cut(s)	51, 548
BfoI	RGCGCY	1 cut(s)	228
BisI	GCNGC	7 cut(s)	187, 223, 241, 260, 271, 274, 495
BlsI	GCNGC	7 cut(s)	188, 224, 242, 261, 272, 275, 496
Bme1390I	CCNGG	1 cut(s)	525
BmgBI	CACGTC	1 cut(s)	477
BmrFI	CCNGG	1 cut(s)	525
BpiI	GAAGAC	2 cut(s)	88, 350
Bpu14I	TTCGAA	1 cut(s)	447
BpuMI	CCSGG	1 cut(s)	525
BsaHI	GRCGYC	1 cut(s)	539
BsaJI	CCNNGG	3 cut(s)	271, 408, 524
BsaWI	WCCGGW	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 330
Bse118I	RCCGGY	1 cut(s)	110
BseDI	CCNNGG	3 cut(s)	271, 408, 524
BseLI	CCNNNNNNNGG	2 cut(s)	199, 330
BseMII	CTCAG	1 cut(s)	164
BseSI	GKGCMC	1 cut(s)	531
BseX3I	CGGCCG	1 cut(s)	90
BseXI	GCAGC	3 cut(s)	173, 234, 246
Bsh1236I	CGCG	2 cut(s)	273, 533
Bsh1285I	CGRYCG	1 cut(s)	93
BshFI	GGCC	4 cut(s)	92, 102, 206, 523
BshTI	ACCGGT	1 cut(s)	110
BsiEI	CGRYCG	1 cut(s)	93
BsiSI	CCGG	5 cut(s)	70, 89, 111, 324, 524
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	2 cut(s)	199, 330
BsmAI	GTCTC	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	323
BsnI	GGCC	4 cut(s)	92, 102, 206, 523
Bsp119I	TTCGAA	1 cut(s)	447
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp143I	GATC	1 cut(s)	277
Bsp19I	CCATGG	1 cut(s)	408
BspACI	CCGC	9 cut(s)	240, 243, 271, 273, 295, 341, 494, 497, 533
BspANI	GGCC	4 cut(s)	92, 102, 206, 523
BspCNI	CTCAG	1 cut(s)	163
BspFNI	CGCG	2 cut(s)	273, 533
BspPI	GGATC	1 cut(s)	272
BspT104I	TTCGAA	1 cut(s)	447
BsrFI	RCCGGY	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	3 cut(s)	271, 408, 524
BssMI	GATC	1 cut(s)	277
BssNI	GRCGYC	1 cut(s)	539
BssT1I	CCWWGG	1 cut(s)	408
Bst4CI	ACNGT	3 cut(s)	52, 315, 427
BstACI	GRCGYC	1 cut(s)	539
BstBI	TTCGAA	1 cut(s)	447
BstC8I	GCNNGC	2 cut(s)	521, 531
BstDEI	CTNAG	1 cut(s)	150
BstDSI	CCRYGG	2 cut(s)	271, 408
BstFNI	CGCG	2 cut(s)	273, 533
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	1 cut(s)	280
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	277
BstMCI	CGRYCG	1 cut(s)	93
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 212
BstNSI	RCATGY	1 cut(s)	311
BstSCI	CCNGG	1 cut(s)	523
BstSFI	CTRYAG	2 cut(s)	51, 548
BstSLI	GKGCMC	1 cut(s)	531
BstUI	CGCG	2 cut(s)	273, 533
BstV1I	GCAGC	3 cut(s)	173, 234, 246
BstV2I	GAAGAC	2 cut(s)	88, 350
BstXI	CCANNNNNNTGG	1 cut(s)	235
BstZI	CGGCCG	1 cut(s)	90
BsuRI	GGCC	4 cut(s)	92, 102, 206, 523
BtgI	CCRYGG	2 cut(s)	271, 408
BtrI	CACGTC	1 cut(s)	477
Cac8I	GCNNGC	2 cut(s)	521, 531
CfoI	GCGC	1 cut(s)	227
Cfr10I	RCCGGY	1 cut(s)	110
Cfr42I	CCGCGG	1 cut(s)	274
CseI	GACGC	1 cut(s)	528
Csp6I	GTAC	1 cut(s)	123
CspAI	ACCGGT	1 cut(s)	110
CviAII	CATG	2 cut(s)	308, 409
CviJI	RGCY	7 cut(s)	92, 102, 206, 215, 327, 519, 523
CviKI_1	RGCY	7 cut(s)	92, 102, 206, 215, 327, 519, 523
CviQI	GTAC	1 cut(s)	123
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
DraIII	CACNNNGTG	1 cut(s)	535
EaeI	YGGCCR	4 cut(s)	90, 100, 204, 521
EagI	CGGCCG	1 cut(s)	90
EciI	GGCGGA	1 cut(s)	258
EclXI	CGGCCG	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	408
Eco52I	CGGCCG	1 cut(s)	90
EcoRI	GAATTC	1 cut(s)	449
EcoT14I	CCWWGG	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	2 cut(s)	311, 412
FaiI	YATR	3 cut(s)	26, 309, 410
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	2 cut(s)	307, 408
FauI	CCCGC	3 cut(s)	302, 348, 490
FblI	GTMKAC	1 cut(s)	542
Fnu4HI	GCNGC	7 cut(s)	187, 223, 241, 260, 271, 274, 495
Fsp4HI	GCNGC	7 cut(s)	187, 223, 241, 260, 271, 274, 495
FspBI	CTAG	1 cut(s)	264
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	7 cut(s)	187, 223, 241, 260, 271, 274, 495
HaeII	RGCGCY	1 cut(s)	228
HaeIII	GGCC	4 cut(s)	92, 102, 206, 523
HapII	CCGG	5 cut(s)	70, 89, 111, 324, 524
HgaI	GACGC	1 cut(s)	528
HhaI	GCGC	1 cut(s)	227
Hin1I	GRCGYC	1 cut(s)	539
Hin1II	CATG	2 cut(s)	311, 412
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HincII	GTYRAC	1 cut(s)	543
HindII	GTYRAC	1 cut(s)	543
HinfI	GANTC	3 cut(s)	35, 85, 506
HpaII	CCGG	5 cut(s)	70, 89, 111, 324, 524
HphI	GGTGA	4 cut(s)	13, 292, 445, 484
Hpy166II	GTNNAC	1 cut(s)	543
Hpy188I	TCNGA	4 cut(s)	84, 141, 212, 511
Hpy8I	GTNNAC	1 cut(s)	543
Hpy99I	CGWCG	3 cut(s)	319, 544, 547
HpyAV	CCTTC	3 cut(s)	113, 477, 484
HpyCH4III	ACNGT	3 cut(s)	52, 315, 427
HpyCH4IV	ACGT	1 cut(s)	476
HpyCH4V	TGCA	3 cut(s)	9, 311, 364
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 212
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	1 cut(s)	476
Hsp92I	GRCGYC	1 cut(s)	539
Hsp92II	CATG	2 cut(s)	311, 412
HspAI	GCGC	1 cut(s)	225
KspI	CCGCGG	1 cut(s)	274
Kzo9I	GATC	1 cut(s)	277
LpnPI	CCDG	7 cut(s)	83, 102, 124, 201, 337, 505, 537
Lsp1109I	GCAGC	3 cut(s)	173, 234, 246
MaeI	CTAG	1 cut(s)	264
MaeII	ACGT	1 cut(s)	476
MaeIII	GTNAC	2 cut(s)	415, 472
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	6 cut(s)	52, 55, 71, 88, 350, 499
MhlI	GDGCHC	1 cut(s)	531
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	2 cut(s)	196, 449
MluNI	TGGCCA	1 cut(s)	206
MlyI	GAGTC	1 cut(s)	515
MnlI	CCTC	3 cut(s)	294, 298, 308
Mox20I	TGGCCA	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	206
MslI	CAYNNNNRTG	2 cut(s)	413, 425
Msp20I	TGGCCA	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	273
MspI	CCGG	5 cut(s)	70, 89, 111, 324, 524
MspR9I	CCNGG	1 cut(s)	525
MvnI	CGCG	2 cut(s)	273, 533
MwoI	GCNNNNNNNGC	2 cut(s)	70, 212
NciI	CCSGG	1 cut(s)	525
NcoI	CCATGG	1 cut(s)	408
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	2 cut(s)	311, 412
NmuCI	GTSAC	2 cut(s)	415, 472
NspI	RCATGY	1 cut(s)	311
NspV	TTCGAA	1 cut(s)	447
PfeI	GAWTC	2 cut(s)	35, 85
PflFI	GACNNNGTC	1 cut(s)	145
PflMI	CCANNNNNTGG	1 cut(s)	199
PinAI	ACCGGT	1 cut(s)	110
PkrI	GCNGC	7 cut(s)	188, 224, 242, 261, 272, 275, 496
PleI	GAGTC	1 cut(s)	514
PpsI	GAGTC	1 cut(s)	514
PsyI	GACNNNGTC	1 cut(s)	145
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
RseI	CAYNNNNRTG	2 cut(s)	413, 425
SacII	CCGCGG	1 cut(s)	274
SalI	GTCGAC	1 cut(s)	541
SatI	GCNGC	7 cut(s)	187, 223, 241, 260, 271, 274, 495
Sau3AI	GATC	1 cut(s)	277
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	1 cut(s)	525
SduI	GDGCHC	1 cut(s)	531
SetI	ASST	7 cut(s)	14, 124, 217, 286, 335, 352, 479
SfcI	CTRYAG	2 cut(s)	51, 548
Sfr303I	CCGCGG	1 cut(s)	274
SfuI	TTCGAA	1 cut(s)	447
SgrBI	CCGCGG	1 cut(s)	274
SgrDI	CGTCGACG	1 cut(s)	541
SmiMI	CAYNNNNRTG	2 cut(s)	413, 425
Sse9I	AATT	2 cut(s)	196, 449
SsiI	CCGC	9 cut(s)	240, 243, 271, 273, 295, 341, 494, 497, 533
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	523
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	3 cut(s)	52, 315, 427
TaiI	ACGT	1 cut(s)	479
TaqI	TCGA	5 cut(s)	38, 117, 290, 447, 542
TasI	AATT	2 cut(s)	196, 449
TauI	GCSGC	4 cut(s)	243, 273, 276, 497
TfiI	GAWTC	2 cut(s)	35, 85
TseFI	GTSAC	2 cut(s)	415, 472
TseI	GCWGC	3 cut(s)	186, 222, 259
Tsp45I	GTSAC	2 cut(s)	415, 472
Tth111I	GACNNNGTC	1 cut(s)	145
Van91I	CCANNNNNTGG	1 cut(s)	199
XapI	RAATTY	2 cut(s)	196, 449
XceI	RCATGY	1 cut(s)	311
XmiI	GTMKAC	1 cut(s)	542
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.