Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0009389

Physical Location & Seq

Genomic Coordinates Forward (+)

9304443 .. 9304910

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1114300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCAACCCTGAAGGAAATCCTAACCCGACGACCCGTGACGGCGACGATCCGCCTCACGGTCCCGGCGGGAGCAGCCCGACCCGTAGCTCCGGTGGGTCCCGCTCTGGGTCAATACAGGCTCAACCTGATGGCCTTCTGCAAGGACTTCAACGCCCGGACCCAAAAGTACAAACCCGACACGCCCATGGCGGTGATCATCACCGCCTTCAAAGACAACACCTTCGAGTTCACGGTGAGGTCGCCGTCCGTCACATGGTACCTGAAGAAGGCCGCCGGGATCGAGTCCGGCAGCAGCCGTCCCGGACACGCGGTGGCGTCGACGCTGTCGGTGAGGCACGTGTACGAGATCGCGAAGATGAAGCAGTCCGACCCGTATTGCCAGTACATGCCATTGGAGTCCATTTGTAAGTCGGTTATCGGTACCGCTAATTCTATGGGAATGAAGGTTGTTAAGGAATTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0032543 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:0098798 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

156

Amino Acids

17.03

Weight (kDa)

9.74

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L11_N	PF03946	17 - 75	6.7e-22	Ribosomal protein L11, N-terminal domain
Ribosomal_L11	PF00298	81 - 150	9.2e-26	Ribosomal protein L11, RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35490 AT4G35490
fragaria_vesca	FvH4_1g10230 FvH4_1g10230 FvH4_4g16570
malus_domestica	MD02G1114300.v1.1 MD07G1093800.v1.1 MD15G1229900.v1.1
prunus_persica	Prupe.8G126100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0097051
rosa_laevigata	RLG00000016698
rosa_multiflora	Rmu_co8331479.1_g000001 Rmu_sc0006626.1_g000009 Rmu_ssc0000008.1_g000028
rosa_roxburghii	Rroxscaffold_2G00145020
rosa_rugosa	Rorug02G0063200
rosa_samantha	Rh2AG110800 Rh2BG112700 Rh2CG114900 Rh2DG114100 Rh4AG013400
rosa_wichuraiana	Rw2G008610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	258, 422
AccB1I	GGYRCC	2 cut(s)	258, 422
AccBSI	CCGCTC	1 cut(s)	104
AccI	GTMKAC	1 cut(s)	320
AccII	CGCG	2 cut(s)	311, 353
AciI	CCGC	8 cut(s)	52, 68, 102, 191, 204, 273, 311, 426
AclWI	GGATC	2 cut(s)	43, 287
AcuI	CTGAAG	2 cut(s)	32, 284
AcvI	CACGTG	1 cut(s)	340
AcyI	GRCGYC	1 cut(s)	317
AdeI	CACNNNGTG	1 cut(s)	313
AfaI	GTAC	5 cut(s)	170, 260, 344, 386, 424
AfiI	CCNNNNNNNGG	4 cut(s)	58, 107, 255, 268
AflIII	ACRYGT	1 cut(s)	339
AgsI	TTSAA	2 cut(s)	151, 211
AluBI	AGCT	1 cut(s)	89
AluI	AGCT	1 cut(s)	89
AlwI	GGATC	2 cut(s)	43, 287
AoxI	GGCC	2 cut(s)	132, 270
ApeKI	GCWGC	3 cut(s)	74, 291, 294
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
Asp718I	GGTACC	2 cut(s)	258, 422
AspS9I	GGNCC	3 cut(s)	61, 98, 159
AsuC2I	CCSGG	4 cut(s)	65, 157, 277, 303
AsuHPI	GGTGA	4 cut(s)	193, 205, 247, 343
AvaII	GGWCC	3 cut(s)	61, 98, 159
BanI	GGYRCC	2 cut(s)	258, 422
BbrPI	CACGTG	1 cut(s)	340
BbvI	GCAGC	3 cut(s)	86, 303, 306
BccI	CCATC	1 cut(s)	124
BceAI	ACGGC	3 cut(s)	57, 229, 282
BclI	TGATCA	1 cut(s)	195
BcnI	CCSGG	4 cut(s)	65, 157, 277, 303
BisI	GCNGC	4 cut(s)	75, 273, 292, 295
BlsI	GCNGC	4 cut(s)	76, 274, 293, 296
Bme1390I	CCNGG	4 cut(s)	65, 157, 277, 303
Bme18I	GGWCC	3 cut(s)	61, 98, 159
BmgT120I	GGNCC	3 cut(s)	61, 98, 159
BmiI	GGNNCC	6 cut(s)	63, 99, 100, 161, 260, 424
BmrFI	CCNGG	4 cut(s)	65, 157, 277, 303
BpuMI	CCSGG	4 cut(s)	65, 157, 277, 303
BsaAI	YACGTR	1 cut(s)	340
BsaHI	GRCGYC	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	186
BsaWI	WCCGGW	1 cut(s)	91
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 107, 255, 268
Bse1I	ACTGG	1 cut(s)	382
BseDI	CCNNGG	1 cut(s)	186
BseLI	CCNNNNNNNGG	4 cut(s)	58, 107, 255, 268
BseNI	ACTGG	1 cut(s)	382
BseXI	GCAGC	3 cut(s)	86, 303, 306
Bsh1236I	CGCG	2 cut(s)	311, 353
BshFI	GGCC	2 cut(s)	134, 272
BshNI	GGYRCC	2 cut(s)	258, 422
BsiSI	CCGG	6 cut(s)	65, 92, 157, 276, 288, 303
BslFI	GGGAC	3 cut(s)	47, 84, 285
BslI	CCNNNNNNNGG	4 cut(s)	58, 107, 255, 268
BsmFI	GGGAC	3 cut(s)	47, 84, 285
BsnI	GGCC	2 cut(s)	134, 272
Bsp143I	GATC	4 cut(s)	48, 195, 279, 348
Bsp19I	CCATGG	1 cut(s)	186
Bsp68I	TCGCGA	1 cut(s)	353
BspACI	CCGC	8 cut(s)	52, 68, 102, 191, 204, 273, 311, 426
BspANI	GGCC	2 cut(s)	134, 272
BspFNI	CGCG	2 cut(s)	311, 353
BspLI	GGNNCC	6 cut(s)	63, 99, 100, 161, 260, 424
BspPI	GGATC	2 cut(s)	43, 287
BspT107I	GGYRCC	2 cut(s)	258, 422
BsrBI	CCGCTC	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	382
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	4 cut(s)	48, 195, 279, 348
BssNI	GRCGYC	1 cut(s)	317
BssT1I	CCWWGG	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	61, 235
BstACI	GRCGYC	1 cut(s)	317
BstBAI	YACGTR	1 cut(s)	340
BstDSI	CCRYGG	1 cut(s)	186
BstENI	CCTNNNNNAGG	1 cut(s)	266
BstFNI	CGCG	2 cut(s)	311, 353
BstKTI	GATC	4 cut(s)	51, 198, 282, 351
BstMBI	GATC	4 cut(s)	48, 195, 279, 348
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNSI	RCATGY	1 cut(s)	391
BstSCI	CCNGG	4 cut(s)	63, 155, 275, 301
BstUI	CGCG	2 cut(s)	311, 353
BstV1I	GCAGC	3 cut(s)	86, 303, 306
BsuRI	GGCC	2 cut(s)	134, 272
BtgI	CCRYGG	1 cut(s)	186
BtuMI	TCGCGA	1 cut(s)	353
Cfr13I	GGNCC	3 cut(s)	61, 98, 159
CseI	GACGC	2 cut(s)	306, 331
Csp6I	GTAC	5 cut(s)	169, 259, 343, 385, 423
CviAII	CATG	3 cut(s)	187, 255, 388
CviJI	RGCY	6 cut(s)	77, 89, 121, 134, 272, 297
CviKI_1	RGCY	6 cut(s)	77, 89, 121, 134, 272, 297
CviQI	GTAC	5 cut(s)	169, 259, 343, 385, 423
DpnI	GATC	4 cut(s)	50, 197, 281, 350
DpnII	GATC	4 cut(s)	48, 195, 279, 348
DraIII	CACNNNGTG	1 cut(s)	313
EciI	GGCGGA	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	186
Eco47I	GGWCC	3 cut(s)	61, 98, 159
Eco57I	CTGAAG	2 cut(s)	32, 284
Eco72I	CACGTG	1 cut(s)	340
EcoNI	CCTNNNNNAGG	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	3 cut(s)	190, 258, 391
FaiI	YATR	4 cut(s)	188, 256, 389, 437
FaqI	GGGAC	3 cut(s)	47, 84, 285
FatI	CATG	3 cut(s)	186, 254, 387
FauI	CCCGC	2 cut(s)	61, 109
FbaI	TGATCA	1 cut(s)	195
FblI	GTMKAC	1 cut(s)	320
Fnu4HI	GCNGC	4 cut(s)	75, 273, 292, 295
Fsp4HI	GCNGC	4 cut(s)	75, 273, 292, 295
GluI	GCNGC	4 cut(s)	75, 273, 292, 295
HaeIII	GGCC	2 cut(s)	134, 272
HapII	CCGG	6 cut(s)	65, 92, 157, 276, 288, 303
HgaI	GACGC	2 cut(s)	306, 331
Hin1I	GRCGYC	1 cut(s)	317
Hin1II	CATG	3 cut(s)	190, 258, 391
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HinfI	GANTC	2 cut(s)	284, 398
HpaII	CCGG	6 cut(s)	65, 92, 157, 276, 288, 303
HphI	GGTGA	4 cut(s)	193, 205, 247, 343
Hpy166II	GTNNAC	3 cut(s)	231, 321, 343
Hpy188I	TCNGA	1 cut(s)	370
Hpy188III	TCNNGA	1 cut(s)	352
Hpy8I	GTNNAC	3 cut(s)	231, 321, 343
Hpy99I	CGWCG	4 cut(s)	33, 49, 322, 325
HpyAV	CCTTC	6 cut(s)	7, 145, 217, 232, 262, 439
HpyCH4III	ACNGT	2 cut(s)	61, 235
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	1 cut(s)	141
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpySE526I	ACGT	1 cut(s)	339
Hsp92I	GRCGYC	1 cut(s)	317
Hsp92II	CATG	3 cut(s)	190, 258, 391
KflI	GGGWCCC	1 cut(s)	98
KpnI	GGTACC	2 cut(s)	262, 426
Ksp22I	TGATCA	1 cut(s)	195
Kzo9I	GATC	4 cut(s)	48, 195, 279, 348
LmnI	GCTCC	2 cut(s)	71, 94
Lsp1109I	GCAGC	3 cut(s)	86, 303, 306
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	2 cut(s)	37, 250
MalI	GATC	4 cut(s)	50, 197, 281, 350
MbiI	CCGCTC	1 cut(s)	104
MboI	GATC	4 cut(s)	48, 195, 279, 348
MboII	GAAGA	2 cut(s)	277, 367
MluCI	AATT	2 cut(s)	430, 458
MlyI	GAGTC	2 cut(s)	293, 407
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	3 cut(s)	65, 231, 327
MseI	TTAA	1 cut(s)	453
MslI	CAYNNNNRTG	2 cut(s)	185, 191
MspI	CCGG	6 cut(s)	65, 92, 157, 276, 288, 303
MspR9I	CCNGG	4 cut(s)	65, 157, 277, 303
MvnI	CGCG	2 cut(s)	311, 353
MwoI	GCNNNNNNNGC	1 cut(s)	74
NciI	CCSGG	4 cut(s)	65, 157, 277, 303
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	4 cut(s)	48, 195, 279, 348
NlaIII	CATG	3 cut(s)	190, 258, 391
NlaIV	GGNNCC	6 cut(s)	63, 99, 100, 161, 260, 424
NmuCI	GTSAC	2 cut(s)	37, 250
NruI	TCGCGA	1 cut(s)	353
NspI	RCATGY	1 cut(s)	391
PflFI	GACNNNGTC	1 cut(s)	325
PfoI	TCCNGGA	1 cut(s)	301
PkrI	GCNGC	4 cut(s)	76, 274, 293, 296
PleI	GAGTC	2 cut(s)	292, 406
PmaCI	CACGTG	1 cut(s)	340
PmlI	CACGTG	1 cut(s)	340
PpsI	GAGTC	2 cut(s)	292, 406
Ppu21I	YACGTR	1 cut(s)	340
PpuMI	RGGWCCY	1 cut(s)	98
Psp5II	RGGWCCY	1 cut(s)	98
PspCI	CACGTG	1 cut(s)	340
PspN4I	GGNNCC	6 cut(s)	63, 99, 100, 161, 260, 424
PspPI	GGNCC	3 cut(s)	61, 98, 159
PspPPI	RGGWCCY	1 cut(s)	98
PsyI	GACNNNGTC	1 cut(s)	325
RruI	TCGCGA	1 cut(s)	353
RsaI	GTAC	5 cut(s)	170, 260, 344, 386, 424
RsaNI	GTAC	5 cut(s)	169, 259, 343, 385, 423
RseI	CAYNNNNRTG	2 cut(s)	185, 191
SalI	GTCGAC	1 cut(s)	319
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	4 cut(s)	75, 273, 292, 295
Sau3AI	GATC	4 cut(s)	48, 195, 279, 348
Sau96I	GGNCC	3 cut(s)	61, 98, 159
SchI	GAGTC	2 cut(s)	293, 407
ScrFI	CCNGG	4 cut(s)	65, 157, 277, 303
SetI	ASST	7 cut(s)	91, 129, 224, 242, 264, 342, 450
SgrDI	CGTCGACG	1 cut(s)	319
SinI	GGWCC	3 cut(s)	61, 98, 159
SmiMI	CAYNNNNRTG	2 cut(s)	185, 191
Sse9I	AATT	2 cut(s)	430, 458
SsiI	CCGC	8 cut(s)	52, 68, 102, 191, 204, 273, 311, 426
StyD4I	CCNGG	4 cut(s)	63, 155, 275, 301
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	2 cut(s)	61, 235
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	3 cut(s)	225, 282, 320
TasI	AATT	2 cut(s)	430, 458
TatI	WGTACW	2 cut(s)	168, 384
TauI	GCSGC	1 cut(s)	275
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TseFI	GTSAC	2 cut(s)	37, 250
TseI	GCWGC	3 cut(s)	74, 291, 294
Tsp45I	GTSAC	2 cut(s)	37, 250
TspDTI	ATGAA	2 cut(s)	374, 458
TspGWI	ACGGA	1 cut(s)	238
Tth111I	GACNNNGTC	1 cut(s)	325
VpaK11BI	GGWCC	3 cut(s)	61, 98, 159
XagI	CCTNNNNNAGG	1 cut(s)	266
XceI	RCATGY	1 cut(s)	391
XmiI	GTMKAC	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.