Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009389

Physical Location & Seq

Genomic Coordinates Forward (+)

15060605 .. 15061439

Gene Structure 835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G126100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGTCAACGATCAAGGAGATCCTTACCCGACGACCCGTGATGGCGACGATCCGGGTCACAGTCCCGGCCGGCGCGGCCAGACCCAGCCAGCAACTGAGCCCTGCTTTGGGTCAATACAGGCTGAACATGATGGCCTTCTGCAAGGACTTCAACGCCCGGACCCAGAAATTCAAACCCGACACGCCCATGGCGGTCACCATCACCGCTTTCAAAGACAACACCTTCGAGTTCACGGTAAAGTCACCGTCTGTCAGCTGGTACCTGAAGAAGGCCACCGGCGTCGAGTCCGGCAGCAGCCGACCCGGACACGTGGTCGCTTCTAAGCTGTCGGTGAGGCACGTGTATGAGATCGCCAAGGTGAAGCAATCTGACCCGTATTGCCAGTACATGCCCCTGGAGTCCATTTGTAAGTCTGTTATTGGAACGGCTAATTCTATGGGGATTAAGATTGTTAAGGATTTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0032543 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:0098798 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

156

Amino Acids

17.14

Weight (kDa)

9.8

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35490 AT4G35490
fragaria_vesca	FvH4_1g10230 FvH4_1g10230 FvH4_4g16570
malus_domestica	MD02G1114300.v1.1 MD07G1093800.v1.1 MD15G1229900.v1.1
prunus_persica	Prupe.8G126100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0097051
rosa_laevigata	RLG00000016698
rosa_multiflora	Rmu_co8331479.1_g000001 Rmu_sc0006626.1_g000009 Rmu_ssc0000008.1_g000028
rosa_roxburghii	Rroxscaffold_2G00145020
rosa_rugosa	Rorug02G0063200
rosa_samantha	Rh2AG110800 Rh2BG112700 Rh2CG114900 Rh2DG114100 Rh4AG013400
rosa_wichuraiana	Rw2G008610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	258
AccB1I	GGYRCC	1 cut(s)	258
AccII	CGCG	1 cut(s)	74
AciI	CCGC	3 cut(s)	74, 191, 204
AclWI	GGATC	2 cut(s)	13, 43
AcoI	YGGCCR	2 cut(s)	66, 75
AcsI	RAATTY	1 cut(s)	167
AcuI	CTGAAG	1 cut(s)	284
AcvI	CACGTG	2 cut(s)	310, 340
AcyI	GRCGYC	1 cut(s)	279
AfaI	GTAC	2 cut(s)	260, 386
AfiI	CCNNNNNNNGG	3 cut(s)	106, 107, 268
AflIII	ACRYGT	2 cut(s)	307, 339
AgsI	TTSAA	3 cut(s)	151, 172, 211
AhdI	GACNNNNNGTC	1 cut(s)	311
AjnI	CCWGG	1 cut(s)	393
AluBI	AGCT	2 cut(s)	255, 325
AluI	AGCT	2 cut(s)	255, 325
AlwI	GGATC	2 cut(s)	13, 43
AlwNI	CAGNNNCTG	1 cut(s)	94
AoxI	GGCC	4 cut(s)	66, 75, 132, 270
ApeKI	GCWGC	2 cut(s)	291, 294
ApoI	RAATTY	1 cut(s)	167
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
Asp718I	GGTACC	1 cut(s)	258
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	159
AsuC2I	CCSGG	4 cut(s)	53, 65, 157, 303
AsuHPI	GGTGA	5 cut(s)	187, 193, 234, 343, 370
AvaII	GGWCC	1 cut(s)	159
BanI	GGYRCC	1 cut(s)	258
BanII	GRGCYC	1 cut(s)	101
BbrPI	CACGTG	2 cut(s)	310, 340
BbvI	GCAGC	2 cut(s)	303, 306
BccI	CCATC	3 cut(s)	34, 124, 206
BceAI	ACGGC	1 cut(s)	441
BciT130I	CCWGG	1 cut(s)	395
BcnI	CCSGG	4 cut(s)	53, 65, 157, 303
BglI	GCCNNNNNGGC	1 cut(s)	74
BisI	GCNGC	3 cut(s)	75, 292, 295
BlsI	GCNGC	3 cut(s)	76, 293, 296
Bme1390I	CCNGG	5 cut(s)	53, 65, 157, 303, 395
Bme18I	GGWCC	1 cut(s)	159
BmeRI	GACNNNNNGTC	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	2 cut(s)	161, 260
BmrFI	CCNGG	5 cut(s)	53, 65, 157, 303, 395
BpmI	CTGGAG	1 cut(s)	416
BpuMI	CCSGG	4 cut(s)	53, 65, 157, 303
BsaAI	YACGTR	2 cut(s)	310, 340
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	3 cut(s)	186, 354, 393
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 107, 268
Bse118I	RCCGGY	2 cut(s)	68, 275
Bse1I	ACTGG	1 cut(s)	382
BseBI	CCWGG	1 cut(s)	395
BseDI	CCNNGG	3 cut(s)	186, 354, 393
BseLI	CCNNNNNNNGG	3 cut(s)	106, 107, 268
BseMII	CTCAG	1 cut(s)	86
BseNI	ACTGG	1 cut(s)	382
BseX3I	CGGCCG	1 cut(s)	66
BseXI	GCAGC	2 cut(s)	303, 306
BseYI	CCCAGC	1 cut(s)	83
Bsh1236I	CGCG	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	4 cut(s)	68, 77, 134, 272
BshNI	GGYRCC	1 cut(s)	258
BsiEI	CGRYCG	1 cut(s)	69
BsiSI	CCGG	7 cut(s)	52, 65, 69, 157, 276, 288, 303
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	3 cut(s)	106, 107, 268
BsmFI	GGGAC	1 cut(s)	47
BsnI	GGCC	4 cut(s)	68, 77, 134, 272
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp143I	GATC	4 cut(s)	9, 18, 48, 348
Bsp19I	CCATGG	1 cut(s)	186
BspACI	CCGC	3 cut(s)	74, 191, 204
BspANI	GGCC	4 cut(s)	68, 77, 134, 272
BspCNI	CTCAG	1 cut(s)	87
BspFNI	CGCG	1 cut(s)	74
BspLI	GGNNCC	2 cut(s)	161, 260
BspPI	GGATC	2 cut(s)	13, 43
BspT107I	GGYRCC	1 cut(s)	258
BsrFI	RCCGGY	2 cut(s)	68, 275
BsrI	ACTGG	1 cut(s)	382
BssAI	RCCGGY	2 cut(s)	68, 275
BssECI	CCNNGG	3 cut(s)	186, 354, 393
BssMI	GATC	4 cut(s)	9, 18, 48, 348
BssNI	GRCGYC	1 cut(s)	279
BssT1I	CCWWGG	2 cut(s)	186, 354
Bst2UI	CCWGG	1 cut(s)	395
Bst4CI	ACNGT	3 cut(s)	61, 235, 246
BstACI	GRCGYC	1 cut(s)	279
BstBAI	YACGTR	2 cut(s)	310, 340
BstC8I	GCNNGC	2 cut(s)	70, 89
BstDEI	CTNAG	2 cut(s)	95, 321
BstDSI	CCRYGG	1 cut(s)	186
BstEII	GGTNACC	1 cut(s)	193
BstENI	CCTNNNNNAGG	1 cut(s)	266
BstFNI	CGCG	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	4 cut(s)	12, 21, 51, 351
BstMBI	GATC	4 cut(s)	9, 18, 48, 348
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNI	CCWGG	1 cut(s)	395
BstNSI	RCATGY	1 cut(s)	391
BstPI	GGTNACC	1 cut(s)	193
BstSCI	CCNGG	5 cut(s)	51, 63, 155, 301, 393
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	2 cut(s)	303, 306
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
BstZI	CGGCCG	1 cut(s)	66
BsuRI	GGCC	4 cut(s)	68, 77, 134, 272
BtgI	CCRYGG	1 cut(s)	186
Cac8I	GCNNGC	2 cut(s)	70, 89
CaiI	CAGNNNCTG	1 cut(s)	94
CfoI	GCGC	1 cut(s)	74
Cfr10I	RCCGGY	2 cut(s)	68, 275
Cfr13I	GGNCC	1 cut(s)	159
CseI	GACGC	1 cut(s)	268
Csp6I	GTAC	2 cut(s)	259, 385
CviAII	CATG	3 cut(s)	127, 187, 388
CviQI	GTAC	2 cut(s)	259, 385
DdeI	CTNAG	2 cut(s)	95, 321
DpnI	GATC	4 cut(s)	11, 20, 50, 350
DpnII	GATC	4 cut(s)	9, 18, 48, 348
DriI	GACNNNNNGTC	1 cut(s)	311
EaeI	YGGCCR	2 cut(s)	66, 75
EagI	CGGCCG	1 cut(s)	66
Eam1105I	GACNNNNNGTC	1 cut(s)	311
EclXI	CGGCCG	1 cut(s)	66
Eco130I	CCWWGG	2 cut(s)	186, 354
Eco24I	GRGCYC	1 cut(s)	101
Eco47I	GGWCC	1 cut(s)	159
Eco52I	CGGCCG	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	284
Eco72I	CACGTG	2 cut(s)	310, 340
Eco91I	GGTNACC	1 cut(s)	193
EcoNI	CCTNNNNNAGG	1 cut(s)	266
EcoO65I	GGTNACC	1 cut(s)	193
EcoRII	CCWGG	1 cut(s)	393
EcoT14I	CCWWGG	2 cut(s)	186, 354
EcoT38I	GRGCYC	1 cut(s)	101
ErhI	CCWWGG	2 cut(s)	186, 354
FaeI	CATG	3 cut(s)	130, 190, 391
FaiI	YATR	5 cut(s)	128, 188, 345, 389, 437
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	3 cut(s)	126, 186, 387
Fnu4HI	GCNGC	3 cut(s)	75, 292, 295
FriOI	GRGCYC	1 cut(s)	101
Fsp4HI	GCNGC	3 cut(s)	75, 292, 295
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	3 cut(s)	75, 292, 295
GsaI	CCCAGC	1 cut(s)	87
GsuI	CTGGAG	1 cut(s)	416
HaeIII	GGCC	4 cut(s)	68, 77, 134, 272
HapII	CCGG	7 cut(s)	52, 65, 69, 157, 276, 288, 303
HgaI	GACGC	1 cut(s)	268
HhaI	GCGC	1 cut(s)	74
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	3 cut(s)	130, 190, 391
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	284, 398
HpaII	CCGG	7 cut(s)	52, 65, 69, 157, 276, 288, 303
HphI	GGTGA	5 cut(s)	187, 193, 234, 343, 370
Hpy166II	GTNNAC	2 cut(s)	6, 231
Hpy188I	TCNGA	1 cut(s)	370
Hpy8I	GTNNAC	2 cut(s)	6, 231
Hpy99I	CGWCG	3 cut(s)	33, 49, 284
HpyAV	CCTTC	3 cut(s)	145, 232, 262
HpyCH4III	ACNGT	3 cut(s)	61, 235, 246
HpyCH4IV	ACGT	2 cut(s)	309, 339
HpyCH4V	TGCA	1 cut(s)	141
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	2 cut(s)	95, 321
HpySE526I	ACGT	2 cut(s)	309, 339
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	3 cut(s)	130, 190, 391
HspAI	GCGC	1 cut(s)	72
KpnI	GGTACC	1 cut(s)	262
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
Kzo9I	GATC	4 cut(s)	9, 18, 48, 348
Lsp1109I	GCAGC	2 cut(s)	303, 306
MaeII	ACGT	2 cut(s)	309, 339
MaeIII	GTNAC	3 cut(s)	55, 193, 240
MalI	GATC	4 cut(s)	11, 20, 50, 350
MboI	GATC	4 cut(s)	9, 18, 48, 348
MboII	GAAGA	1 cut(s)	277
MflI	RGATCY	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	101
MluCI	AATT	2 cut(s)	167, 430
MlyI	GAGTC	2 cut(s)	293, 407
MnlI	CCTC	1 cut(s)	327
MroNI	GCCGGC	1 cut(s)	68
MseI	TTAA	2 cut(s)	444, 453
MslI	CAYNNNNRTG	2 cut(s)	185, 342
MspA1I	CMGCKG	1 cut(s)	255
MspI	CCGG	7 cut(s)	52, 65, 69, 157, 276, 288, 303
MspR9I	CCNGG	5 cut(s)	53, 65, 157, 303, 395
MvaI	CCWGG	1 cut(s)	395
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	74
NaeI	GCCGGC	1 cut(s)	70
NciI	CCSGG	4 cut(s)	53, 65, 157, 303
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	4 cut(s)	9, 18, 48, 348
NgoMIV	GCCGGC	1 cut(s)	68
NlaIII	CATG	3 cut(s)	130, 190, 391
NlaIV	GGNNCC	2 cut(s)	161, 260
NmuCI	GTSAC	3 cut(s)	55, 193, 240
NspI	RCATGY	1 cut(s)	391
PdiI	GCCGGC	1 cut(s)	70
PkrI	GCNGC	3 cut(s)	76, 293, 296
PleI	GAGTC	2 cut(s)	292, 406
PmaCI	CACGTG	2 cut(s)	310, 340
PmlI	CACGTG	2 cut(s)	310, 340
PpsI	GAGTC	2 cut(s)	292, 406
Ppu21I	YACGTR	2 cut(s)	310, 340
Psp6I	CCWGG	1 cut(s)	393
PspCI	CACGTG	2 cut(s)	310, 340
PspEI	GGTNACC	1 cut(s)	193
PspFI	CCCAGC	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	393
PspN4I	GGNNCC	2 cut(s)	161, 260
PspPI	GGNCC	1 cut(s)	159
PstNI	CAGNNNCTG	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	18
PvuII	CAGCTG	1 cut(s)	255
RsaI	GTAC	2 cut(s)	260, 386
RsaNI	GTAC	2 cut(s)	259, 385
RseI	CAYNNNNRTG	2 cut(s)	185, 342
SaqAI	TTAA	2 cut(s)	444, 453
SatI	GCNGC	3 cut(s)	75, 292, 295
Sau3AI	GATC	4 cut(s)	9, 18, 48, 348
Sau96I	GGNCC	1 cut(s)	159
SchI	GAGTC	2 cut(s)	293, 407
ScrFI	CCNGG	5 cut(s)	53, 65, 157, 303, 395
SduI	GDGCHC	1 cut(s)	101
SetI	ASST	7 cut(s)	224, 257, 264, 312, 327, 342, 360
SfiI	GGCCNNNNNGGCC	1 cut(s)	74
SgrAI	CRCCGGYG	1 cut(s)	275
SinI	GGWCC	1 cut(s)	159
SmiMI	CAYNNNNRTG	2 cut(s)	185, 342
Sse9I	AATT	2 cut(s)	167, 430
SsiI	CCGC	3 cut(s)	74, 191, 204
StyD4I	CCNGG	5 cut(s)	51, 63, 155, 301, 393
StyI	CCWWGG	2 cut(s)	186, 354
TaaI	ACNGT	3 cut(s)	61, 235, 246
TaiI	ACGT	2 cut(s)	312, 342
TaqI	TCGA	2 cut(s)	225, 282
TasI	AATT	2 cut(s)	167, 430
TatI	WGTACW	1 cut(s)	384
TauI	GCSGC	1 cut(s)	77
Tru1I	TTAA	2 cut(s)	444, 453
Tru9I	TTAA	2 cut(s)	444, 453
TseFI	GTSAC	3 cut(s)	55, 193, 240
TseI	GCWGC	2 cut(s)	291, 294
Tsp45I	GTSAC	3 cut(s)	55, 193, 240
VpaK11BI	GGWCC	1 cut(s)	159
XagI	CCTNNNNNAGG	1 cut(s)	266
XapI	RAATTY	1 cut(s)	167
XceI	RCATGY	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.