Rorug02G0063200

Belongs to the universal ribosomal protein uL11 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
4962505 .. 4967835
5331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0063200.1

Sequence Viewer

Length: 1671 bp
ATGTATGAGTTCTGGGTCATCAAGAACAAACCTGGACATCAAGAAATTATTGTGGATGATTGCTCTACATTGATATTTAAGAACGTTGCCACAACGGGAAGTGGCAGCCAGCATGCAGCCTCTCATATGGCGACATATGGGGTCTTGAAGGATGAATTAGAAGGCGCCAACCGCTGTCTAGAGGCTATTTTCAGAGCTGGTGGCATTGATCCATCCACCGGAGGAAAATCAGAGGTTGGTTGTCTTAAGGAGGGCACTTATGATGTAATGTTCTCTATGGATGCCTTGGACACCTATTCGCACTGTTACACGACAGATTTTGATGAAGTTCTATTTCTATTTGTTCCGGGAAAGGAGCCTCTCACCGCTGATGAGATTAAAAAAGCTTGGCCTACACTAAAAATTAGGGCCGCACATTGCATAGCCGTTACAAATTACTTTGCGTTCCATCGCATTTTATTTGTAACCAAGTATGACAGAGCGAGAGCGGAGAAATACTTTTTAGGCGGAGACGAGCCAGATCTTGGGAAAGTTAATTCGCCTGACGAGTTTCTTGCAGCCCTCCATGAGTCTGCAGTGATTATTAGCTATAAGACTCCAGCTGTTGAGATGAATACAGTGAGGGACTATAGGGATTTACCGGCAGAATCAATGTTCCTTTATGCTCTAAACCAGAGGTTCTTTAAAATAGCTCGTAGAAAAGATCCACCCTTCATCTCATGCTCAACTTCCGCAGATGTTCTATTTAATCCCTTGAAGGCGTACATGATGACTTCATCTTGTAAAGAAAAGGGAACAATTCAGGCCCTAGAGTCGATCCTGATTGAGGTTGCCAGGGTACGGCTGCATGGGTTTTCAGAACGAGAAGTGTCTATAGTTCGAGCTTTACTGATGACTTCTGGTATTGATTTTGAAAAGTTATTCACCATTATTTTTCTCTGGCAGCATTTTCTCCGTAATGAACCTGTTATTGGGATTGACTATGAGGCTCAACTCCAGAAGACTCTTCTACCTTATATAAAAGCAGCAGAGATATCCAAATATGCTGAGAAGTTACAAACATCATGCAGCTGTGTCATTAAGACAATTGAACCACGAGCTTCTGCAATAGTAGAAGATCTGAAAAATGTTGTATCTAAAATCAGTGCTCTTGAGGAAGAAAGAATCATTTCTCCATGGGATGAAGAACATATTCCAGAAGAAATTGTTAGCACAAAACCTAATCCAGGGAATATTGTGCAGCAATGTGAATATTCAAATATTGGAGCTACTGAATTGATTCTATCAAATGGCATGAGAGTTTGCTATAAGAGTACAGACTTTCTTGATGATCAGTTATTAATGTTAAAACTAATCGATGAGGTGGATATGACAGGAAAACGAATGGTATCTTCTACAAGTCTTAAATGCGATGACCTCACAGGACTGCCATTCACTTTTCCTAGAACCATAATAAGAGAAGTGGTACGCAGCCCTATGGTGGAAGAACAATGCTCTGTCCAGCTTTGCTTTCCTGTGGAGCTGAATAATGGAACCATGATCTACACTGTGGGTGTTTCAGTATTTCTTGGCGGTAATAAGCCTTCCAGAACTGCTAATGTGGAAGAGAGGAACTTACGGCTGACGGCGGTGGCGGAAGATGCGGCGGCAAAGAGTGGTCCGGCTATATAG

Protein Analysis

556

Amino Acids

62.18

Weight (kDa)

5.32

Isoelectric Point (pI)

34.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 164
AccB7I CCANNNNNTGG 1 cut(s) 524
AccBSI CCGCTC 1 cut(s) 488
AclI AACGTT 1 cut(s) 84
AclWI GGATC 3 cut(s) 203, 698, 811
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 4 cut(s) 764, 840, 1315, 1467
AfiI CCNNNNNNNGG 7 cut(s) 218, 524, 826, 840, 971, 1226, 1480
AflII CTTAAG 1 cut(s) 245
AgsI TTSAA 5 cut(s) 148, 757, 914, 1091, 1257
AjnI CCWGG 3 cut(s) 31, 833, 1225
AjuI GAANNNNNNNTTGG 2 cut(s) 954, 986
Alw21I GWGCWC 1 cut(s) 1150
Alw26I GTCTC 1 cut(s) 504
AlwI GGATC 3 cut(s) 203, 698, 811
AoxI GGCC 3 cut(s) 389, 408, 804
ApeKI GCWGC 9 cut(s) 105, 116, 557, 844, 943, 1025, 1068, 1240, 1470
AseI ATTAAT 1 cut(s) 1340
Asp700I GAANNNNTTC 3 cut(s) 1168, 1191, 1278
AspLEI GCGC 1 cut(s) 167
AspS9I GGNCC 3 cut(s) 408, 805, 1658
AsuC2I CCSGG 1 cut(s) 348
AsuHPI GGTGA 2 cut(s) 355, 916
AvaII GGWCC 1 cut(s) 1658
BaeGI GKGCMC 1 cut(s) 257
BanI GGYRCC 1 cut(s) 164
BarI GAAGNNNNNNTAC 2 cut(s) 1567, 1599
BauI CACGAG 1 cut(s) 1095
BbsI GAAGAC 1 cut(s) 1007
Bbv12I GWGCWC 1 cut(s) 1150
BbvI GCAGC 9 cut(s) 117, 128, 569, 831, 955, 1037, 1080, 1252, 1482
BccI CCATC 2 cut(s) 220, 456
BceAI ACGGC 4 cut(s) 410, 857, 1634, 1641
BcgI CGANNNNNNTGC 2 cut(s) 536, 570
BciT130I CCWGG 3 cut(s) 33, 835, 1227
BclI TGATCA 1 cut(s) 1330
BcnI CCSGG 1 cut(s) 348
BcoDI GTCTC 1 cut(s) 504
BfaI CTAG 3 cut(s) 179, 809, 1443
BfmI CTRYAG 3 cut(s) 573, 628, 873
BfoI RGCGCY 1 cut(s) 168
BfrI CTTAAG 1 cut(s) 245
BglII AGATCT 2 cut(s) 520, 1117
Bme1390I CCNGG 4 cut(s) 33, 348, 835, 1227
Bme18I GGWCC 1 cut(s) 1658
BmgT120I GGNCC 3 cut(s) 408, 805, 1658
BmiI GGNNCC 3 cut(s) 166, 357, 1534
BmrFI CCNGG 4 cut(s) 33, 348, 835, 1227
BmsI GCATC 2 cut(s) 271, 1630
BpiI GAAGAC 1 cut(s) 1007
BpmI CTGGAG 2 cut(s) 582, 980
BpuEI CTTGAG 1 cut(s) 1172
BpuMI CCSGG 1 cut(s) 348
Bsa29I ATCGAT 1 cut(s) 1356
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 4 cut(s) 285, 834, 1175, 1226
BsaWI WCCGGW 1 cut(s) 218
Bsc4I CCNNNNNNNGG 7 cut(s) 218, 524, 826, 840, 971, 1226, 1480
Bse118I RCCGGY 1 cut(s) 640
Bse3DI GCAATG 2 cut(s) 415, 1250
BseBI CCWGG 3 cut(s) 33, 835, 1227
BseCI ATCGAT 1 cut(s) 1356
BseDI CCNNGG 4 cut(s) 285, 834, 1175, 1226
BseGI GGATG 5 cut(s) 61, 157, 212, 286, 1186
BseLI CCNNNNNNNGG 7 cut(s) 218, 524, 826, 840, 971, 1226, 1480
BseMI GCAATG 2 cut(s) 415, 1250
BseMII CTCAG 1 cut(s) 1038
BseSI GKGCMC 1 cut(s) 257
BseXI GCAGC 9 cut(s) 117, 128, 569, 831, 955, 1037, 1080, 1252, 1482
BsgI GTGCAG 1 cut(s) 1259
BshFI GGCC 3 cut(s) 391, 410, 806
BshNI GGYRCC 1 cut(s) 164
BshVI ATCGAT 1 cut(s) 1356
BsiHKAI GWGCWC 1 cut(s) 1150
BsiSI CCGG 4 cut(s) 219, 347, 641, 1661
BslFI GGGAC 1 cut(s) 638
BslI CCNNNNNNNGG 7 cut(s) 218, 524, 826, 840, 971, 1226, 1480
BsmAI GTCTC 1 cut(s) 504
BsmBI CGTCTC 1 cut(s) 504
BsmFI GGGAC 1 cut(s) 638
BsnI GGCC 3 cut(s) 391, 410, 806
Bsp1286I GDGCHC 2 cut(s) 257, 1150
Bsp143I GATC 7 cut(s) 208, 520, 703, 816, 1117, 1330, 1539
Bsp19I CCATGG 1 cut(s) 1175
BspANI GGCC 3 cut(s) 391, 410, 806
BspCNI CTCAG 1 cut(s) 1039
BspDI ATCGAT 1 cut(s) 1356
BspLI GGNNCC 3 cut(s) 166, 357, 1534
BspMAI CTGCAG 1 cut(s) 577
BspPI GGATC 3 cut(s) 203, 698, 811
BspT107I GGYRCC 1 cut(s) 164
BspTI CTTAAG 1 cut(s) 245
BsrBI CCGCTC 1 cut(s) 488
BsrDI GCAATG 2 cut(s) 415, 1250
BsrFI RCCGGY 1 cut(s) 640
BssAI RCCGGY 1 cut(s) 640
BssECI CCNNGG 4 cut(s) 285, 834, 1175, 1226
BssMI GATC 7 cut(s) 208, 520, 703, 816, 1117, 1330, 1539
BssNI GRCGYC 1 cut(s) 165
BssSI CACGAG 1 cut(s) 1095
BssT1I CCWWGG 2 cut(s) 285, 1175
Bst2BI CACGAG 1 cut(s) 1095
Bst2UI CCWGG 3 cut(s) 33, 835, 1227
Bst4CI ACNGT 3 cut(s) 305, 619, 1549
Bst6I CTCTTC 2 cut(s) 1011, 1599
BstACI GRCGYC 1 cut(s) 165
BstAFI CTTAAG 1 cut(s) 245
BstC8I GCNNGC 2 cut(s) 110, 114
BstDEI CTNAG 1 cut(s) 1047
BstDSI CCRYGG 1 cut(s) 1175
BstENI CCTNNNNNAGG 2 cut(s) 824, 1224
BstF5I GGATG 5 cut(s) 61, 157, 212, 286, 1186
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 7 cut(s) 211, 523, 706, 819, 1120, 1333, 1542
BstMAI GTCTC 1 cut(s) 504
BstMBI GATC 7 cut(s) 208, 520, 703, 816, 1117, 1330, 1539
BstMWI GCNNNNNNNGC 2 cut(s) 171, 1640
BstNI CCWGG 3 cut(s) 33, 835, 1227
BstNSI RCATGY 1 cut(s) 116
BstSCI CCNGG 4 cut(s) 31, 346, 833, 1225
BstSFI CTRYAG 3 cut(s) 573, 628, 873
BstSLI GKGCMC 1 cut(s) 257
BstV1I GCAGC 9 cut(s) 117, 128, 569, 831, 955, 1037, 1080, 1252, 1482
BstV2I GAAGAC 1 cut(s) 1007
BstX2I RGATCY 3 cut(s) 520, 703, 1117
BstYI RGATCY 3 cut(s) 520, 703, 1117
Bsu15I ATCGAT 1 cut(s) 1356
BsuRI GGCC 3 cut(s) 391, 410, 806
BsuTUI ATCGAT 1 cut(s) 1356
BtgI CCRYGG 1 cut(s) 1175
BtgZI GCGATG 2 cut(s) 434, 1425
BtsCI GGATG 5 cut(s) 61, 157, 212, 286, 1186
BtsI GCAGTG 1 cut(s) 582
BtsIMutI CAGTG 5 cut(s) 301, 582, 624, 1150, 1545
Cac8I GCNNGC 2 cut(s) 110, 114
CfoI GCGC 1 cut(s) 167
Cfr10I RCCGGY 1 cut(s) 640
Cfr13I GGNCC 3 cut(s) 408, 805, 1658
ClaI ATCGAT 1 cut(s) 1356
Csp6I GTAC 4 cut(s) 763, 839, 1314, 1466
CviAII CATG 9 cut(s) 113, 566, 720, 766, 848, 1065, 1176, 1294, 1537
CviQI GTAC 4 cut(s) 763, 839, 1314, 1466
DdeI CTNAG 1 cut(s) 1047
DinI GGCGCC 1 cut(s) 166
DpnI GATC 7 cut(s) 210, 522, 705, 818, 1119, 1332, 1541
DpnII GATC 7 cut(s) 208, 520, 703, 816, 1117, 1330, 1539
DraI TTTAAA 1 cut(s) 685
Eam1104I CTCTTC 2 cut(s) 1011, 1599
EarI CTCTTC 2 cut(s) 1011, 1599
EciI GGCGGA 2 cut(s) 522, 1649
Eco130I CCWWGG 2 cut(s) 285, 1175
Eco32I GATATC 1 cut(s) 1035
Eco47I GGWCC 1 cut(s) 1658
EcoNI CCTNNNNNAGG 2 cut(s) 824, 1224
EcoO109I RGGNCCY 1 cut(s) 805
EcoRII CCWGG 3 cut(s) 31, 833, 1225
EcoRV GATATC 1 cut(s) 1035
EcoT14I CCWWGG 2 cut(s) 285, 1175
EgeI GGCGCC 1 cut(s) 166
EheI GGCGCC 1 cut(s) 166
ErhI CCWWGG 2 cut(s) 285, 1175
Esp3I CGTCTC 1 cut(s) 504
FaeI CATG 9 cut(s) 116, 569, 723, 769, 851, 1068, 1179, 1297, 1540
FaqI GGGAC 1 cut(s) 638
FatI CATG 9 cut(s) 112, 565, 719, 765, 847, 1064, 1175, 1293, 1536
FauNDI CATATG 2 cut(s) 126, 136
FbaI TGATCA 1 cut(s) 1330
FokI GGATG 5 cut(s) 68, 164, 199, 293, 1193
FspBI CTAG 3 cut(s) 179, 809, 1443
GlaI GCGC 1 cut(s) 166
GsuI CTGGAG 2 cut(s) 582, 980
HaeII RGCGCY 1 cut(s) 168
HaeIII GGCC 3 cut(s) 391, 410, 806
HapII CCGG 4 cut(s) 219, 347, 641, 1661
HhaI GCGC 1 cut(s) 167
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 9 cut(s) 116, 569, 723, 769, 851, 1068, 1179, 1297, 1540
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HindIII AAGCTT 1 cut(s) 384
HinfI GANTC 7 cut(s) 569, 595, 647, 812, 1003, 1164, 1279
HpaII CCGG 4 cut(s) 219, 347, 641, 1661
HphI GGTGA 2 cut(s) 355, 916
Hpy188I TCNGA 4 cut(s) 194, 232, 859, 1122
HpyAV CCTTC 5 cut(s) 142, 155, 721, 751, 1593
HpyCH4III ACNGT 3 cut(s) 305, 619, 1549
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 8 cut(s) 116, 420, 557, 575, 847, 1068, 1106, 1240
HpyF10VI GCNNNNNNNGC 2 cut(s) 171, 1640
HpyF3I CTNAG 1 cut(s) 1047
HpySE526I ACGT 1 cut(s) 84
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 9 cut(s) 116, 569, 723, 769, 851, 1068, 1179, 1297, 1540
HspAI GCGC 1 cut(s) 165
KasI GGCGCC 1 cut(s) 164
Ksp22I TGATCA 1 cut(s) 1330
Kzo9I GATC 7 cut(s) 208, 520, 703, 816, 1117, 1330, 1539
LmnI GCTCC 3 cut(s) 355, 1265, 1519
Lsp1109I GCAGC 9 cut(s) 117, 128, 569, 831, 955, 1037, 1080, 1252, 1482
LweI GCATC 2 cut(s) 271, 1630
MaeI CTAG 3 cut(s) 179, 809, 1443
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 4 cut(s) 305, 427, 463, 1053
MalI GATC 7 cut(s) 210, 522, 705, 818, 1119, 1332, 1541
MbiI CCGCTC 1 cut(s) 488
MboI GATC 7 cut(s) 208, 520, 703, 816, 1117, 1330, 1539
MfeI CAATTG 1 cut(s) 1086
MflI RGATCY 3 cut(s) 520, 703, 1117
MhlI GDGCHC 2 cut(s) 257, 1150
MluCI AATT 9 cut(s) 45, 155, 402, 433, 535, 798, 1086, 1203, 1274
Mly113I GGCGCC 1 cut(s) 165
MlyI GAGTC 4 cut(s) 578, 589, 821, 997
MroXI GAANNNNTTC 3 cut(s) 1168, 1191, 1278
MspA1I CMGCKG 4 cut(s) 174, 368, 602, 1071
MspCI CTTAAG 1 cut(s) 245
MspI CCGG 4 cut(s) 219, 347, 641, 1661
MspR9I CCNGG 4 cut(s) 33, 348, 835, 1227
MunI CAATTG 1 cut(s) 1086
MvaI CCWGG 3 cut(s) 33, 835, 1227
MwoI GCNNNNNNNGC 2 cut(s) 171, 1640
NarI GGCGCC 1 cut(s) 165
NciI CCSGG 1 cut(s) 348
NcoI CCATGG 1 cut(s) 1175
NdeI CATATG 2 cut(s) 126, 136
NdeII GATC 7 cut(s) 208, 520, 703, 816, 1117, 1330, 1539
NlaIII CATG 9 cut(s) 116, 569, 723, 769, 851, 1068, 1179, 1297, 1540
NlaIV GGNNCC 3 cut(s) 166, 357, 1534
NspI RCATGY 1 cut(s) 116
PaeI GCATGC 1 cut(s) 116
PdmI GAANNNNTTC 3 cut(s) 1168, 1191, 1278
PfeI GAWTC 3 cut(s) 647, 1164, 1279
PflMI CCANNNNNTGG 1 cut(s) 524
PfoI TCCNGGA 1 cut(s) 346
PleI GAGTC 4 cut(s) 577, 589, 820, 997
PluTI GGCGCC 1 cut(s) 168
PpsI GAGTC 4 cut(s) 577, 589, 820, 997
PshBI ATTAAT 1 cut(s) 1340
Psp1406I AACGTT 1 cut(s) 84
Psp6I CCWGG 3 cut(s) 31, 833, 1225
PspGI CCWGG 3 cut(s) 31, 833, 1225
PspN4I GGNNCC 3 cut(s) 166, 357, 1534
PspPI GGNCC 3 cut(s) 408, 805, 1658
PstI CTGCAG 1 cut(s) 577
PsuI RGATCY 3 cut(s) 520, 703, 1117
PvuII CAGCTG 2 cut(s) 602, 1071
RsaI GTAC 4 cut(s) 764, 840, 1315, 1467
RsaNI GTAC 4 cut(s) 763, 839, 1314, 1466
Sau3AI GATC 7 cut(s) 208, 520, 703, 816, 1117, 1330, 1539
Sau96I GGNCC 3 cut(s) 408, 805, 1658
SchI GAGTC 4 cut(s) 578, 589, 821, 997
ScrFI CCNGG 4 cut(s) 33, 348, 835, 1227
SduI GDGCHC 2 cut(s) 257, 1150
SfaNI GCATC 2 cut(s) 271, 1630
SfcI CTRYAG 3 cut(s) 573, 628, 873
SfoI GGCGCC 1 cut(s) 166
SinI GGWCC 1 cut(s) 1658
SmlI CTYRAG 2 cut(s) 245, 1151
SmoI CTYRAG 2 cut(s) 245, 1151
SphI GCATGC 1 cut(s) 116
Sse9I AATT 9 cut(s) 45, 155, 402, 433, 535, 798, 1086, 1203, 1274
SspDI GGCGCC 1 cut(s) 164
SspI AATATT 3 cut(s) 1234, 1253, 1261
SspMI CTAG 3 cut(s) 179, 809, 1443
StyD4I CCNGG 4 cut(s) 31, 346, 833, 1225
StyI CCWWGG 2 cut(s) 285, 1175
TaaI ACNGT 3 cut(s) 305, 619, 1549
TaiI ACGT 1 cut(s) 87
TaqI TCGA 3 cut(s) 815, 880, 1356
TasI AATT 9 cut(s) 45, 155, 402, 433, 535, 798, 1086, 1203, 1274
TatI WGTACW 1 cut(s) 1313
TauI GCSGC 3 cut(s) 413, 1646, 1649
TfiI GAWTC 3 cut(s) 647, 1164, 1279
TscAI CASTG 5 cut(s) 308, 582, 624, 1150, 1552
TseI GCWGC 9 cut(s) 105, 116, 557, 844, 943, 1025, 1068, 1240, 1470
TspDTI ATGAA 7 cut(s) 168, 339, 626, 703, 765, 975, 1197
TspGWI ACGGA 1 cut(s) 944
TspRI CASTG 5 cut(s) 308, 582, 624, 1150, 1552
Van91I CCANNNNNTGG 1 cut(s) 524
Vha464I CTTAAG 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 1658
VspI ATTAAT 1 cut(s) 1340
XagI CCTNNNNNAGG 2 cut(s) 824, 1224
XbaI TCTAGA 1 cut(s) 178
XceI RCATGY 1 cut(s) 116
XmnI GAANNNNTTC 3 cut(s) 1168, 1191, 1278
XspI CTAG 3 cut(s) 179, 809, 1443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.