AT4G35580
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
16888386 .. 16890877
2492 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G35580.1

Sequence Viewer

Length: 1539 bp
ATGGGTGCTGTATCGATGGAGTCGCTTCCTTTAGGTTTCAGATTCAGACCTACCGATGAAGAGCTCGTCAATCACTACCTCCGTCTCAAGATCAACGGACGTCACTCCGATGTCCGTGTCATCCCTGATATCGATGTCTGCAAATGGGAACCTTGGGATCTTCCTGCTCTCTCGGTGATTAAGACGGATGATCCAGAGTGGTTCTTTTTCTGCCCTCGTGATCGGAAATACCCTAATGGTCATCGCTCTAACAGAGCAACTGACTCTGGCTATTGGAAAGCTACTGGTAAAGATCGTAGCATCAAGTCTAAGAAGACTTTAATCGGTATGAAGAAGACTCTTGTCTTCTATCGTGGACGAGCTCCTAAAGGTGAGCGGACTAATTGGATTATGCACGAGTATCGTCCCACTCTTAAGGATCTTGATGGCACTTCCCCTGGCCAAAGCCCTTACGTTCTTTGTCGCCTCTTCCACAAGCCTGATGATCGGGTTAATGGTGTCAAGTCCGATGAAGCAGCTTTTACGGCCAGCAACAAATACTCACCTGATGATACATCATCTGATCTTGTTCAAGAAACACCTTCCTCTGATGCTGCTGTTGAGAAACCATCAGATTATTCAGGTGGATGCGGTTATGCTCATAGTAATAGTACCGCAGATGGGACAATGATTGAGGCACCTGAAGAGAATCTTTGGTTATCTTGTGACCTTGAAGATCAAAAGGCACCACTACCGTGTATGGATTCTATATATGCTGGTGATTTCAGTTACGATGAGATTGGATTCCAATTTCAAGATGGTACCAGCGAACCAGATGTATCACTAACAGAATTGTTGGAGGAGGTGTTCAATAACCCTGATGACTTCTCTTGCGAGGAATCGATCAGTCGAGAGAATCCAGCAGTCTCACCAAATGGGATATTTTCATCTGCTAAAATGCTGCAGTCTGCAGCACCAGAGGATGCTTTCTTCAACGACTTCATGGCTTTCACTGATACAGATGCTGAGATGGCGCAATTGCAGTATGGTTCAGAAGGTGGAGCTTCTGGTTGGCCAAGTGACACTAATTCATACTATAGTGATTTGGTTCAGCAAGAGCAAATGATCAATCATAACACAGAGAACAACCTCACAGAAGGGAGAGGGATAAAGATCCGGGCTCGACAGCCTCAGAACCGGCAGAGTACAGGATTGATAAACCAGGGTATTGCTCCAAGGAGAATCCGTCTGCAGCTGCAGTCTAACTCTGAAGTAAAAGAACGAGAGGAGGTGAATGAAGGACACACTGTTATTCCCGAGGCCAAAGAAGCTGCAGCTAAATACTCAGAGAAGAGTGGTTCTTTGGTTAAACCTCAAATAAAGCTCAGGGCGCGGGGAACTATAGGCCAAGTAAAAGGAGAGAGATTTGCAGACGACGAGGTACAGGTGCAGAGCAGAAAGAGACGAGGAGGGAAGCGATGGAAGGTGGTTGCAACGGTAATGGTGGCTGTGATGGTTGGGGTAGGGATGGGTATATGGAGGACACTGGTGAGTTCATGA

Protein Analysis

512

Amino Acids

57.25

Weight (kDa)

5.32

Isoelectric Point (pI)

47.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 10 - 135 7.4e-49 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 103
Acc65I GGTACC 1 cut(s) 800
AccB1I GGYRCC 3 cut(s) 676, 724, 800
AccBSI CCGCTC 1 cut(s) 376
AccII CGCG 1 cut(s) 1372
AciI CCGC 4 cut(s) 376, 630, 654, 1372
AclWI GGATC 4 cut(s) 165, 185, 426, 1147
AcoI YGGCCR 3 cut(s) 439, 525, 1052
AcuI CTGAAG 2 cut(s) 702, 1269
AcyI GRCGYC 1 cut(s) 100
AfaI GTAC 4 cut(s) 652, 802, 1186, 1422
AfiI CCNNNNNNNGG 1 cut(s) 660
AflII CTTAAG 1 cut(s) 413
AgsI TTSAA 5 cut(s) 572, 713, 794, 850, 973
AjnI CCWGG 2 cut(s) 436, 1200
AleI CACNNNNGTG 1 cut(s) 733
AloI GAACNNNNNNTCC 2 cut(s) 830, 862
AluBI AGCT 9 cut(s) 64, 281, 362, 518, 1043, 1234, 1310, 1316, 1363
AluI AGCT 9 cut(s) 64, 281, 362, 518, 1043, 1234, 1310, 1316, 1363
Alw21I GWGCWC 2 cut(s) 66, 364
Alw26I GTCTC 3 cut(s) 89, 910, 1435
AlwI GGATC 4 cut(s) 165, 185, 426, 1147
AlwNI CAGNNNCTG 1 cut(s) 1004
Ama87I CYCGRG 1 cut(s) 1295
AoxI GGCC 5 cut(s) 439, 525, 1052, 1299, 1384
ApeKI GCWGC 8 cut(s) 515, 593, 940, 950, 1231, 1234, 1310, 1313
Asp718I GGTACC 1 cut(s) 800
AspLEI GCGC 2 cut(s) 1015, 1372
AsuC2I CCSGG 1 cut(s) 1157
AsuHPI GGTGA 6 cut(s) 187, 383, 534, 770, 900, 1282
AvaI CYCGRG 1 cut(s) 1295
BalI TGGCCA 2 cut(s) 441, 1054
BanI GGYRCC 3 cut(s) 676, 724, 800
BanII GRGCYC 3 cut(s) 66, 364, 1162
BauI CACGAG 2 cut(s) 216, 395
BbsI GAAGAC 3 cut(s) 320, 337, 341
Bbv12I GWGCWC 2 cut(s) 66, 364
BbvI GCAGC 8 cut(s) 527, 580, 927, 962, 1221, 1243, 1297, 1325
BccI CCATC 9 cut(s) 10, 419, 616, 653, 791, 1003, 1452, 1486, 1501
BceAI ACGGC 1 cut(s) 540
BcgI CGANNNNNNTGC 2 cut(s) 383, 417
BciT130I CCWGG 2 cut(s) 438, 1202
BclI TGATCA 1 cut(s) 1104
BcnI CCSGG 1 cut(s) 1157
BcoDI GTCTC 3 cut(s) 89, 910, 1435
BfmI CTRYAG 7 cut(s) 941, 948, 1075, 1229, 1235, 1311, 1380
BfrI CTTAAG 1 cut(s) 413
BisI GCNGC 8 cut(s) 516, 594, 941, 951, 1232, 1235, 1311, 1314
BlsI GCNGC 8 cut(s) 517, 595, 942, 952, 1233, 1236, 1312, 1315
Bme1390I CCNGG 3 cut(s) 438, 1157, 1202
BmeT110I CYCGRG 1 cut(s) 1295
BmiI GGNNCC 4 cut(s) 150, 678, 726, 802
BmrFI CCNGG 3 cut(s) 438, 1157, 1202
BmsI GCATC 5 cut(s) 309, 580, 617, 952, 991
BoxI GACNNNNGTC 1 cut(s) 341
BpiI GAAGAC 3 cut(s) 320, 337, 341
Bpu10I CCTNAGC 1 cut(s) 1364
BpuEI CTTGAG 1 cut(s) 71
BpuMI CCSGG 1 cut(s) 1157
Bsa29I ATCGAT 3 cut(s) 14, 132, 881
BsaBI GATNNNNATC 1 cut(s) 1151
BsaHI GRCGYC 1 cut(s) 100
BsaJI CCNNGG 5 cut(s) 152, 436, 1201, 1214, 1296
BsaXI ACNNNNNCTCC 4 cut(s) 830, 860, 1210, 1240
Bsc4I CCNNNNNNNGG 1 cut(s) 660
Bse118I RCCGGY 1 cut(s) 1176
Bse1I ACTGG 2 cut(s) 289, 1530
Bse8I GATNNNNATC 1 cut(s) 1151
BseBI CCWGG 2 cut(s) 438, 1202
BseCI ATCGAT 3 cut(s) 14, 132, 881
BseDI CCNNGG 5 cut(s) 152, 436, 1201, 1214, 1296
BseGI GGATG 5 cut(s) 120, 193, 632, 967, 1512
BseJI GATNNNNATC 1 cut(s) 1151
BseLI CCNNNNNNNGG 1 cut(s) 660
BseMII CTCAG 4 cut(s) 996, 1184, 1338, 1378
BseNI ACTGG 2 cut(s) 289, 1530
BseRI GAGGAG 3 cut(s) 854, 1280, 1461
BseXI GCAGC 8 cut(s) 527, 580, 927, 962, 1221, 1243, 1297, 1325
BsgI GTGCAG 1 cut(s) 1448
Bsh1236I CGCG 1 cut(s) 1372
BshFI GGCC 5 cut(s) 441, 527, 1054, 1301, 1386
BshNI GGYRCC 3 cut(s) 676, 724, 800
BshVI ATCGAT 3 cut(s) 14, 132, 881
BsiHKAI GWGCWC 2 cut(s) 66, 364
BsiHKCI CYCGRG 1 cut(s) 1295
BsiSI CCGG 2 cut(s) 1156, 1177
BslFI GGGAC 2 cut(s) 390, 676
BslI CCNNNNNNNGG 1 cut(s) 660
BsmAI GTCTC 3 cut(s) 89, 910, 1435
BsmBI CGTCTC 2 cut(s) 89, 1435
BsmFI GGGAC 2 cut(s) 390, 676
BsnI GGCC 5 cut(s) 441, 527, 1054, 1301, 1386
BsoBI CYCGRG 1 cut(s) 1295
Bsp1286I GDGCHC 3 cut(s) 66, 364, 1162
BspACI CCGC 4 cut(s) 376, 630, 654, 1372
BspANI GGCC 5 cut(s) 441, 527, 1054, 1301, 1386
BspCNI CTCAG 4 cut(s) 997, 1183, 1337, 1377
BspDI ATCGAT 3 cut(s) 14, 132, 881
BspFNI CGCG 1 cut(s) 1372
BspHI TCATGA 1 cut(s) 1535
BspLI GGNNCC 4 cut(s) 150, 678, 726, 802
BspMAI CTGCAG 5 cut(s) 945, 952, 1233, 1239, 1315
BspPI GGATC 4 cut(s) 165, 185, 426, 1147
BspQI GCTCTTC 1 cut(s) 54
BspT107I GGYRCC 3 cut(s) 676, 724, 800
BspTI CTTAAG 1 cut(s) 413
BsrBI CCGCTC 1 cut(s) 376
BsrFI RCCGGY 1 cut(s) 1176
BsrI ACTGG 2 cut(s) 289, 1530
BssAI RCCGGY 1 cut(s) 1176
BssECI CCNNGG 5 cut(s) 152, 436, 1201, 1214, 1296
BssNI GRCGYC 1 cut(s) 100
BssSI CACGAG 2 cut(s) 216, 395
BssT1I CCWWGG 2 cut(s) 152, 1214
Bst2BI CACGAG 2 cut(s) 216, 395
Bst2UI CCWGG 2 cut(s) 438, 1202
Bst4CI ACNGT 3 cut(s) 735, 1288, 1477
Bst6I CTCTTC 4 cut(s) 54, 473, 678, 1325
BstACI GRCGYC 1 cut(s) 100
BstAFI CTTAAG 1 cut(s) 413
BstC8I GCNNGC 1 cut(s) 529
BstDEI CTNAG 5 cut(s) 309, 1005, 1170, 1324, 1364
BstF5I GGATG 5 cut(s) 120, 193, 632, 967, 1512
BstFNI CGCG 1 cut(s) 1372
BstHHI GCGC 2 cut(s) 1015, 1372
BstMAI GTCTC 3 cut(s) 89, 910, 1435
BstMWI GCNNNNNNNGC 4 cut(s) 524, 1010, 1307, 1369
BstNI CCWGG 2 cut(s) 438, 1202
BstPAI GACNNNNGTC 1 cut(s) 341
BstSCI CCNGG 3 cut(s) 436, 1155, 1200
BstSFI CTRYAG 7 cut(s) 941, 948, 1075, 1229, 1235, 1311, 1380
BstUI CGCG 1 cut(s) 1372
BstV1I GCAGC 8 cut(s) 527, 580, 927, 962, 1221, 1243, 1297, 1325
BstV2I GAAGAC 3 cut(s) 320, 337, 341
BstX2I RGATCY 3 cut(s) 157, 418, 1152
BstYI RGATCY 3 cut(s) 157, 418, 1152
Bsu15I ATCGAT 3 cut(s) 14, 132, 881
BsuRI GGCC 5 cut(s) 441, 527, 1054, 1301, 1386
BsuTUI ATCGAT 3 cut(s) 14, 132, 881
BtgZI GCGATG 2 cut(s) 227, 1471
BtsCI GGATG 5 cut(s) 120, 193, 632, 967, 1512
BtsIMutI CAGTG 3 cut(s) 990, 1284, 1523
Cac8I GCNNGC 1 cut(s) 529
CaiI CAGNNNCTG 1 cut(s) 1004
CciI TCATGA 1 cut(s) 1535
CfoI GCGC 2 cut(s) 1015, 1372
Cfr10I RCCGGY 1 cut(s) 1176
ClaI ATCGAT 3 cut(s) 14, 132, 881
Csp6I GTAC 4 cut(s) 651, 801, 1185, 1421
CviAII CATG 2 cut(s) 982, 1536
CviQI GTAC 4 cut(s) 651, 801, 1185, 1421
DdeI CTNAG 5 cut(s) 309, 1005, 1170, 1324, 1364
EaeI YGGCCR 3 cut(s) 439, 525, 1052
Eam1104I CTCTTC 4 cut(s) 54, 473, 678, 1325
EarI CTCTTC 4 cut(s) 54, 473, 678, 1325
Ecl136II GAGCTC 2 cut(s) 64, 362
Eco130I CCWWGG 2 cut(s) 152, 1214
Eco24I GRGCYC 3 cut(s) 66, 364, 1162
Eco32I GATATC 1 cut(s) 130
Eco53kI GAGCTC 2 cut(s) 64, 362
Eco57I CTGAAG 2 cut(s) 702, 1269
Eco88I CYCGRG 1 cut(s) 1295
EcoICRI GAGCTC 2 cut(s) 64, 362
EcoRII CCWGG 2 cut(s) 436, 1200
EcoRV GATATC 1 cut(s) 130
EcoT14I CCWWGG 2 cut(s) 152, 1214
EcoT38I GRGCYC 3 cut(s) 66, 364, 1162
ErhI CCWWGG 2 cut(s) 152, 1214
Esp3I CGTCTC 2 cut(s) 89, 1435
FaeI CATG 2 cut(s) 985, 1539
FalI AAGNNNNNCTT 2 cut(s) 675, 707
FaqI GGGAC 2 cut(s) 390, 676
FatI CATG 2 cut(s) 981, 1535
FauI CCCGC 1 cut(s) 1365
FbaI TGATCA 1 cut(s) 1104
Fnu4HI GCNGC 8 cut(s) 516, 594, 941, 951, 1232, 1235, 1311, 1314
FokI GGATG 5 cut(s) 107, 200, 639, 974, 1519
FriOI GRGCYC 3 cut(s) 66, 364, 1162
Fsp4HI GCNGC 8 cut(s) 516, 594, 941, 951, 1232, 1235, 1311, 1314
GlaI GCGC 2 cut(s) 1014, 1371
GluI GCNGC 8 cut(s) 516, 594, 941, 951, 1232, 1235, 1311, 1314
HaeIII GGCC 5 cut(s) 441, 527, 1054, 1301, 1386
HapII CCGG 2 cut(s) 1156, 1177
HhaI GCGC 2 cut(s) 1015, 1372
Hin1I GRCGYC 1 cut(s) 100
Hin1II CATG 2 cut(s) 985, 1539
Hin6I GCGC 2 cut(s) 1013, 1370
HinP1I GCGC 2 cut(s) 1013, 1370
HpaII CCGG 2 cut(s) 1156, 1177
HphI GGTGA 6 cut(s) 187, 383, 534, 770, 900, 1282
Hpy166II GTNNAC 1 cut(s) 356
Hpy188III TCNNGA 9 cut(s) 88, 194, 218, 422, 572, 794, 890, 1295, 1536
Hpy8I GTNNAC 1 cut(s) 356
Hpy99I CGWCG 1 cut(s) 1418
HpyAV CCTTC 5 cut(s) 591, 1028, 1130, 1271, 1456
HpyCH4III ACNGT 3 cut(s) 735, 1288, 1477
HpyCH4IV ACGT 2 cut(s) 100, 453
HpyF10VI GCNNNNNNNGC 4 cut(s) 524, 1010, 1307, 1369
HpyF3I CTNAG 5 cut(s) 309, 1005, 1170, 1324, 1364
HpySE526I ACGT 2 cut(s) 100, 453
Hsp92I GRCGYC 1 cut(s) 100
Hsp92II CATG 2 cut(s) 985, 1539
HspAI GCGC 2 cut(s) 1013, 1370
KpnI GGTACC 1 cut(s) 804
Ksp22I TGATCA 1 cut(s) 1104
LguI GCTCTTC 1 cut(s) 54
LmnI GCTCC 3 cut(s) 367, 1040, 1216
Lsp1109I GCAGC 8 cut(s) 527, 580, 927, 962, 1221, 1243, 1297, 1325
LweI GCATC 5 cut(s) 309, 580, 617, 952, 991
MaeII ACGT 2 cut(s) 100, 453
MaeIII GTNAC 4 cut(s) 101, 704, 767, 1058
MbiI CCGCTC 1 cut(s) 376
MfeI CAATTG 1 cut(s) 1016
MflI RGATCY 3 cut(s) 157, 418, 1152
MhlI GDGCHC 3 cut(s) 66, 364, 1162
MlsI TGGCCA 2 cut(s) 441, 1054
MluCI AATT 5 cut(s) 382, 788, 830, 1016, 1066
MluNI TGGCCA 2 cut(s) 441, 1054
MlyI GAGTC 3 cut(s) 29, 257, 331
MmeI TCCRAC 1 cut(s) 816
Mox20I TGGCCA 2 cut(s) 441, 1054
MscI TGGCCA 2 cut(s) 441, 1054
MseI TTAA 5 cut(s) 180, 320, 414, 492, 1347
MslI CAYNNNNRTG 2 cut(s) 108, 733
Msp20I TGGCCA 2 cut(s) 441, 1054
MspA1I CMGCKG 1 cut(s) 1234
MspCI CTTAAG 1 cut(s) 413
MspI CCGG 2 cut(s) 1156, 1177
MspR9I CCNGG 3 cut(s) 438, 1157, 1202
MunI CAATTG 1 cut(s) 1016
MvaI CCWGG 2 cut(s) 438, 1202
MvnI CGCG 1 cut(s) 1372
MwoI GCNNNNNNNGC 4 cut(s) 524, 1010, 1307, 1369
NciI CCSGG 1 cut(s) 1157
NlaIII CATG 2 cut(s) 985, 1539
NlaIV GGNNCC 4 cut(s) 150, 678, 726, 802
NmuCI GTSAC 3 cut(s) 101, 704, 1058
OliI CACNNNNGTG 1 cut(s) 733
PagI TCATGA 1 cut(s) 1535
PciSI GCTCTTC 1 cut(s) 54
PfeI GAWTC 7 cut(s) 42, 688, 743, 783, 878, 895, 1221
PkrI GCNGC 8 cut(s) 517, 595, 942, 952, 1233, 1236, 1312, 1315
PleI GAGTC 3 cut(s) 28, 257, 331
PpsI GAGTC 3 cut(s) 28, 257, 331
PshAI GACNNNNGTC 1 cut(s) 341
Psp124BI GAGCTC 2 cut(s) 66, 364
Psp6I CCWGG 2 cut(s) 436, 1200
PspGI CCWGG 2 cut(s) 436, 1200
PspN4I GGNNCC 4 cut(s) 150, 678, 726, 802
PstI CTGCAG 5 cut(s) 945, 952, 1233, 1239, 1315
PstNI CAGNNNCTG 1 cut(s) 1004
PsuI RGATCY 3 cut(s) 157, 418, 1152
PvuII CAGCTG 1 cut(s) 1234
RsaI GTAC 4 cut(s) 652, 802, 1186, 1422
RsaNI GTAC 4 cut(s) 651, 801, 1185, 1421
RseI CAYNNNNRTG 2 cut(s) 108, 733
SacI GAGCTC 2 cut(s) 66, 364
SapI GCTCTTC 1 cut(s) 54
SaqAI TTAA 5 cut(s) 180, 320, 414, 492, 1347
SatI GCNGC 8 cut(s) 516, 594, 941, 951, 1232, 1235, 1311, 1314
SchI GAGTC 3 cut(s) 29, 257, 331
ScrFI CCNGG 3 cut(s) 438, 1157, 1202
SduI GDGCHC 3 cut(s) 66, 364, 1162
SfaNI GCATC 5 cut(s) 309, 580, 617, 952, 991
SfcI CTRYAG 7 cut(s) 941, 948, 1075, 1229, 1235, 1311, 1380
SmiMI CAYNNNNRTG 2 cut(s) 108, 733
SmlI CTYRAG 2 cut(s) 86, 413
SmoI CTYRAG 2 cut(s) 86, 413
Sse9I AATT 5 cut(s) 382, 788, 830, 1016, 1066
SsiI CCGC 4 cut(s) 376, 630, 654, 1372
SstI GAGCTC 2 cut(s) 66, 364
StyD4I CCNGG 3 cut(s) 436, 1155, 1200
StyI CCWWGG 2 cut(s) 152, 1214
TaaI ACNGT 3 cut(s) 735, 1288, 1477
TaiI ACGT 2 cut(s) 103, 456
TaqI TCGA 5 cut(s) 14, 132, 881, 889, 1162
TasI AATT 5 cut(s) 382, 788, 830, 1016, 1066
TatI WGTACW 1 cut(s) 1184
TfiI GAWTC 7 cut(s) 42, 688, 743, 783, 878, 895, 1221
Tru1I TTAA 5 cut(s) 180, 320, 414, 492, 1347
Tru9I TTAA 5 cut(s) 180, 320, 414, 492, 1347
TscAI CASTG 3 cut(s) 997, 1291, 1530
TseFI GTSAC 3 cut(s) 101, 704, 1058
TseI GCWGC 8 cut(s) 515, 593, 940, 950, 1231, 1234, 1310, 1313
Tsp45I GTSAC 3 cut(s) 101, 704, 1058
TspDTI ATGAA 8 cut(s) 72, 344, 525, 915, 970, 1059, 1290, 1524
TspGWI ACGGA 5 cut(s) 71, 104, 111, 200, 1214
TspRI CASTG 3 cut(s) 997, 1291, 1530
Vha464I CTTAAG 1 cut(s) 413
XcmI CCANNNNNNNNNTGG 1 cut(s) 794
ZraI GACGTC 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.