Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008594

Physical Location & Seq

Genomic Coordinates Forward (+)

60141950 .. 60145885

Gene Structure 3936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00266990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2157 bp

ATGGCGGTGTTGTCGATGGAGTCGCTGCCGCTGGGATTCCGATTCCGGCCGACGGACGAGGAGCTGATCAACCACTACCTGCGCCTCAAGATCAACGGCCGTCATTCCGAGGTCCAAGTCATCCCCGAAATCGACGTCTGCAAATGGGAGCCCTGGGATTTGCCAAAGCTATCGATGATAAAGTCAGATGATCAGGAATGGTTCTTCTTCTGCCCGCGTGACAGGAAGTATCCGAATGGACATCGTTCCAACAGAGCCACTGATGCTGGCTACTGGAAGGCAACCGGGAAGGACCGCACCATTAAGTCCCGCCAGTTCAAGTCTGCTACTAATAACACGGGCTTGGTTGGGATGAAGAAGACGTTGGTTTTCTACAGAGGCCGTGCTCCCAAGGGCGAGCGCACCAGCTGGATCATGCATGAGTATCGTCCCACCCAGAAGGAGCTGGATGGTACTGCTCCTGGACAGTGTGCCTTTGTTCTGTGTCGCCTGTTCCATAAACCAGAGGAGAAGGCTGAAGTTCTAAAGTATGATGAAGTAGACCAACCCGGCTTATCTCCTACCACCTCTCCTGATGAGACATCTTCAGATATAGTTCAGGAATCAGCTACTCCAGATATGAAAGGTGGAAAGGAGTCAGAAGGTATATCAAGGTGGAATGACAGTTTTGAGCACATGACCCCTGATACTCTGACTGTGCCACCTAATGACAGTTATATGGCTTCTGATGTGGAAGTCTATGGACCAGAAGACACAATCTTTCCGGGACATTATCATCTGCCAGGAGAAGTGGGGTTCTATGATCCCAATGAACCCACGATTGACTGCAAAATCTTTTCACCATCGCATTCACCATTCAATGCAGAGCTAGATTATGTGGGTTCACCTCTTGAGTTTGGCAATTATAACAATGGATCGCATTTTCAGGATGGCACATGTGAACAGGATGTATACCTCCCAGAGGTGTTCGATGAGTTTGGCAATAAACAGTATGAGAGCTCCTGTGAGGAGTCAACCAGTCAGAAGAACTTGGTTGGGGTCAGTGAGGCCTATCTATCTGATCATCCATTCATGTTGCAAGCCATACCACCAGAAAACTCATCGCTGAATGCTGCATGGGGTTACGCAGACACCAAAATGACGGAGCATAATCTGCACATGAAAGCTCGTGGCTTGTCCAATGAGCAATTTGATACTTCCCACCAAGCTGAAGCTCCAGCATCGATTTATGGCCATAAACCTAGAATGGAAAATATCGGTTATCCTGGTAACTCATATACTGATTCTGCTGTGTCGAATAATTTGGATGAATCTACCAATTGGAAGAATGGTGATAACCATAGCAGTGATCAAGTTGATGGACCTAGAATAAGGATCAGGTCCCGCCTTCCTCAAGAACCACCAAATTCGAACTTTGTGAATCAGGGAGAGGCCTACAGAAGAATTCGTTTAGTAGTTACAAGGGTTTCAAACCATAGCAAAGAAGAAGATGAAGGGCATTCAATTATCACTGAGGCCAGAGAAACTGTACAGGAGAGTCTTACCTCTGATGAACGGGAGGAAGTTCATGCAATAATCGATGAGGAAGAAGTAACCAGTAGGGATTATTCTGCTAACAATGATTCCGATCTTGTTGGTAAAACTGGAATCAGTTGTAATACCAGGCAACCTCCAGAGGCATCAAACTCAGACAAACCCGTTACTCAGGGCATGGCTCCTAGCAGAATCCGCTTGGCGATGACTAGTTCACCTGGGTCAGTTGCCGATAGTAATGTGAGAGATACAAAGCATGGGCAAGAAGATGAAGTGGAATCTAGTATTATTGAGGCCTGCAAAGCCATAGAGAAAACTCCTAATTTGAACAAGCAGGAGGTAGAGTGTCATCCTCTGAAGTTGGATGCGAGCAGGAAAATTGCGGAAGAACCCGCAACAACACTGATTGATGAGAACAAGAAAACCACTGAAGAAGTCGCAACAAAGATCAGGTCAAGGACGGGAGGGCATGATAATTCGTTACATAGCAGCCGTATTGGAGTGCATTCCAAGGCAGCAGCATCTAAATATCATGGCCTGATTATCTTGTTCATTATTTCAGTTGGGATTCCCTTGGTTCTAACCATGTTCATAGCCTTTAGTGGGATCTGGATATCCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009962 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031347 GO:0031349 GO:0031984 GO:0032101 GO:0032103 GO:0033554 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044212 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071944 GO:0080090 GO:0080134 GO:0097159 GO:0098827 GO:0104004 GO:0140110 GO:1900424 GO:1900426 GO:1901363 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

718

Amino Acids

80.44

Weight (kDa)

5.2

Isoelectric Point (pI)

45.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	10 - 143	2.4e-47	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33060 AT1G33060 AT4G35580 AT4G35580 AT4G35580
fragaria_vesca	FvH4_5g10350 FvH4_5g10350
malus_domestica	MD00G1096600.v1.1 MD06G1124800.v1.1
prunus_persica	Prupe.5G135400_v2.0.a1 Prupe.5G135400_v2.0.a1
pyrus_communis	pycom06g11540 pycom14g11690
rosa_chinensis	RchiOBHm_Chr7g0187871
rosa_laevigata	RLG00000004751
rosa_multiflora	Rmu_ssc0000122.1_g000021
rosa_roxburghii	Rroxscaffold_3G00266990
rosa_rugosa	Rorug06G0484900
rosa_samantha	Rh7AG090100 Rh7BG091700 Rh7CG090800 Rh7DG092500
rosa_wichuraiana	Rw7G007780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	906
AatII	GACGTC	1 cut(s)	138
Acc36I	ACCTGC	1 cut(s)	87
AccI	GTMKAC	2 cut(s)	540, 951
AccII	CGCG	1 cut(s)	217
AciI	CCGC	9 cut(s)	5, 29, 215, 295, 310, 1384, 1729, 1916, 1926
AclWI	GGATC	5 cut(s)	419, 797, 922, 1382, 2147
AcoI	YGGCCR	3 cut(s)	47, 97, 1231
AcsI	RAATTY	2 cut(s)	1405, 1443
AcuI	CTGAAG	5 cut(s)	537, 570, 1230, 1910, 1983
AcyI	GRCGYC	1 cut(s)	135
AfaI	GTAC	2 cut(s)	454, 1530
AfiI	CCNNNNNNNGG	3 cut(s)	52, 961, 2136
AflIII	ACRYGT	1 cut(s)	935
AgsI	TTSAA	5 cut(s)	319, 859, 1470, 1503, 1861
AhlI	ACTAGT	1 cut(s)	1742
AjnI	CCWGG	6 cut(s)	152, 460, 781, 1264, 1661, 1750
AjuI	GAANNNNNNNTTGG	2 cut(s)	347, 379
Alw21I	GWGCWC	3 cut(s)	388, 675, 1001
Alw26I	GTCTC	1 cut(s)	572
AlwI	GGATC	5 cut(s)	419, 797, 922, 1382, 2147
AoxI	GGCC	9 cut(s)	47, 97, 379, 1047, 1231, 1431, 1515, 1827, 2068
ApeKI	GCWGC	5 cut(s)	25, 1112, 2022, 2048, 2051
ApoI	RAATTY	2 cut(s)	1405, 1443
ArsI	GACNNNNNNTTYG	4 cut(s)	120, 152, 1970, 2002
AspLEI	GCGC	2 cut(s)	84, 402
AspS9I	GGNCC	5 cut(s)	112, 292, 743, 1361, 1380
AsuC2I	CCSGG	3 cut(s)	286, 549, 765
AsuHPI	GGTGA	5 cut(s)	831, 843, 876, 1343, 1740
AsuII	TTCGAA	1 cut(s)	1409
AvaII	GGWCC	5 cut(s)	112, 292, 743, 1361, 1380
BalI	TGGCCA	1 cut(s)	1233
BanII	GRGCYC	2 cut(s)	153, 1001
BauI	CACGAG	1 cut(s)	1167
BbsI	GAAGAC	2 cut(s)	365, 756
Bbv12I	GWGCWC	3 cut(s)	388, 675, 1001
BbvI	GCAGC	5 cut(s)	12, 1099, 2034, 2060, 2063
BccI	CCATC	5 cut(s)	10, 443, 850, 923, 1352
BceAI	ACGGC	4 cut(s)	84, 112, 366, 2010
BcgI	CGANNNNNNTGC	2 cut(s)	407, 441
BciT130I	CCWGG	6 cut(s)	154, 462, 783, 1266, 1663, 1752
BciVI	GTATCC	1 cut(s)	240
BclI	TGATCA	4 cut(s)	66, 190, 1060, 1348
BcnI	CCSGG	3 cut(s)	286, 549, 765
BcoDI	GTCTC	1 cut(s)	572
BcuI	ACTAGT	1 cut(s)	1742
BfaI	CTAG	6 cut(s)	869, 1242, 1365, 1719, 1743, 1815
BfmI	CTRYAG	2 cut(s)	373, 1435
BfuAI	ACCTGC	1 cut(s)	87
BfuI	GTATCC	1 cut(s)	240
BisI	GCNGC	6 cut(s)	26, 29, 1113, 2023, 2049, 2052
BlsI	GCNGC	6 cut(s)	27, 30, 1114, 2024, 2050, 2053
Bme1390I	CCNGG	9 cut(s)	154, 286, 462, 549, 765, 783, 1266, 1663, 1752
Bme18I	GGWCC	5 cut(s)	112, 292, 743, 1361, 1380
BmgT120I	GGNCC	5 cut(s)	112, 292, 743, 1361, 1380
BmiI	GGNNCC	3 cut(s)	150, 1382, 1716
BmrFI	CCNGG	9 cut(s)	154, 286, 462, 549, 765, 783, 1266, 1663, 1752
BmsI	GCATC	5 cut(s)	253, 1229, 1688, 1888, 2063
BpiI	GAAGAC	2 cut(s)	365, 756
BpmI	CTGGAG	3 cut(s)	597, 1200, 1656
Bpu14I	TTCGAA	1 cut(s)	1409
BpuEI	CTTGAG	3 cut(s)	71, 911, 1377
BpuMI	CCSGG	3 cut(s)	286, 549, 765
Bsa29I	ATCGAT	3 cut(s)	173, 1223, 1578
BsaBI	GATNNNNATC	1 cut(s)	1626
BsaHI	GRCGYC	1 cut(s)	135
BsaJI	CCNNGG	7 cut(s)	108, 152, 153, 390, 1751, 2043, 2106
BsaXI	ACNNNNNCTCC	4 cut(s)	553, 583, 1862, 1892
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 961, 2136
Bse1I	ACTGG	5 cut(s)	278, 313, 1017, 1596, 1648
Bse8I	GATNNNNATC	1 cut(s)	1626
BseBI	CCWGG	6 cut(s)	154, 462, 783, 1266, 1663, 1752
BseCI	ATCGAT	3 cut(s)	173, 1223, 1578
BseDI	CCNNGG	7 cut(s)	108, 152, 153, 390, 1751, 2043, 2106
BseGI	GGATG	9 cut(s)	120, 357, 454, 934, 952, 1063, 1312, 1882, 1903
BseJI	GATNNNNATC	1 cut(s)	1626
BseLI	CCNNNNNNNGG	3 cut(s)	52, 961, 2136
BseMII	CTCAG	3 cut(s)	1503, 1701, 1718
BseNI	ACTGG	5 cut(s)	278, 313, 1017, 1596, 1648
BseRI	GAGGAG	3 cut(s)	74, 521, 1022
BseX3I	CGGCCG	2 cut(s)	47, 97
BseXI	GCAGC	5 cut(s)	12, 1099, 2034, 2060, 2063
BseYI	CCCAGC	1 cut(s)	31
BsgI	GTGCAG	1 cut(s)	1139
Bsh1236I	CGCG	1 cut(s)	217
Bsh1285I	CGRYCG	2 cut(s)	50, 100
BshFI	GGCC	9 cut(s)	49, 99, 381, 1049, 1233, 1433, 1517, 1829, 2070
BshVI	ATCGAT	3 cut(s)	173, 1223, 1578
BsiEI	CGRYCG	2 cut(s)	50, 100
BsiHKAI	GWGCWC	3 cut(s)	388, 675, 1001
BsiSI	CCGG	4 cut(s)	46, 285, 549, 764
BslFI	GGGAC	4 cut(s)	292, 414, 780, 1366
BslI	CCNNNNNNNGG	3 cut(s)	52, 961, 2136
BsmAI	GTCTC	1 cut(s)	572
BsmFI	GGGAC	4 cut(s)	292, 414, 780, 1366
BsmI	GAATGC	4 cut(s)	847, 1114, 1498, 2038
BsnI	GGCC	9 cut(s)	49, 99, 381, 1049, 1233, 1433, 1517, 1829, 2070
Bsp119I	TTCGAA	1 cut(s)	1409
Bsp1286I	GDGCHC	4 cut(s)	153, 388, 675, 1001
Bsp1407I	TGTACA	1 cut(s)	1528
BspACI	CCGC	9 cut(s)	5, 29, 215, 295, 310, 1384, 1729, 1916, 1926
BspANI	GGCC	9 cut(s)	49, 99, 381, 1049, 1233, 1433, 1517, 1829, 2070
BspCNI	CTCAG	3 cut(s)	1504, 1700, 1717
BspDI	ATCGAT	3 cut(s)	173, 1223, 1578
BspFNI	CGCG	1 cut(s)	217
BspLI	GGNNCC	3 cut(s)	150, 1382, 1716
BspMI	ACCTGC	1 cut(s)	87
BspPI	GGATC	5 cut(s)	419, 797, 922, 1382, 2147
BspT104I	TTCGAA	1 cut(s)	1409
BsrGI	TGTACA	1 cut(s)	1528
BsrI	ACTGG	5 cut(s)	278, 313, 1017, 1596, 1648
BssECI	CCNNGG	7 cut(s)	108, 152, 153, 390, 1751, 2043, 2106
BssNAI	GTATAC	1 cut(s)	952
BssNI	GRCGYC	1 cut(s)	135
BssSI	CACGAG	1 cut(s)	1167
BssT1I	CCWWGG	3 cut(s)	390, 2043, 2106
Bst1107I	GTATAC	1 cut(s)	952
Bst2BI	CACGAG	1 cut(s)	1167
Bst2UI	CCWGG	6 cut(s)	154, 462, 783, 1266, 1663, 1752
Bst4CI	ACNGT	6 cut(s)	468, 665, 697, 713, 990, 1528
BstACI	GRCGYC	1 cut(s)	135
BstAPI	GCANNNNNTGC	1 cut(s)	1153
BstAUI	TGTACA	1 cut(s)	1528
BstBI	TTCGAA	1 cut(s)	1409
BstC8I	GCNNGC	6 cut(s)	215, 268, 398, 1080, 1831, 1903
BstDEI	CTNAG	3 cut(s)	1512, 1687, 1704
BstENI	CCTNNNNNAGG	1 cut(s)	959
BstF5I	GGATG	9 cut(s)	120, 357, 454, 934, 952, 1063, 1312, 1882, 1903
BstFNI	CGCG	1 cut(s)	217
BstHHI	GCGC	2 cut(s)	84, 402
BstMAI	GTCTC	1 cut(s)	572
BstMCI	CGRYCG	2 cut(s)	50, 100
BstMWI	GCNNNNNNNGC	4 cut(s)	263, 1153, 1728, 1835
BstNI	CCWGG	6 cut(s)	154, 462, 783, 1266, 1663, 1752
BstNSI	RCATGY	1 cut(s)	939
BstSCI	CCNGG	9 cut(s)	152, 284, 460, 547, 763, 781, 1264, 1661, 1750
BstSFI	CTRYAG	2 cut(s)	373, 1435
BstUI	CGCG	1 cut(s)	217
BstV1I	GCAGC	5 cut(s)	12, 1099, 2034, 2060, 2063
BstV2I	GAAGAC	2 cut(s)	365, 756
BstX2I	RGATCY	1 cut(s)	2139
BstYI	RGATCY	1 cut(s)	2139
BstZ17I	GTATAC	1 cut(s)	952
BstZI	CGGCCG	2 cut(s)	47, 97
Bsu15I	ATCGAT	3 cut(s)	173, 1223, 1578
BsuI	GTATCC	1 cut(s)	240
BsuRI	GGCC	9 cut(s)	49, 99, 381, 1049, 1233, 1433, 1517, 1829, 2070
BsuTUI	ATCGAT	3 cut(s)	173, 1223, 1578
BtgZI	GCGATG	3 cut(s)	828, 1086, 1751
BtsCI	GGATG	9 cut(s)	120, 357, 454, 934, 952, 1063, 1312, 1882, 1903
BtsI	GCAGTG	1 cut(s)	1351
BtsIMutI	CAGTG	7 cut(s)	258, 473, 1048, 1351, 1509, 1934, 1959
BveI	ACCTGC	1 cut(s)	87
Cac8I	GCNNGC	6 cut(s)	215, 268, 398, 1080, 1831, 1903
CfoI	GCGC	2 cut(s)	84, 402
Cfr13I	GGNCC	5 cut(s)	112, 292, 743, 1361, 1380
ClaI	ATCGAT	3 cut(s)	173, 1223, 1578
Csp6I	GTAC	2 cut(s)	453, 1529
CviQI	GTAC	2 cut(s)	453, 1529
DdeI	CTNAG	3 cut(s)	1512, 1687, 1704
EaeI	YGGCCR	3 cut(s)	47, 97, 1231
EagI	CGGCCG	2 cut(s)	47, 97
Ecl136II	GAGCTC	1 cut(s)	999
EclXI	CGGCCG	2 cut(s)	47, 97
Eco130I	CCWWGG	3 cut(s)	390, 2043, 2106
Eco147I	AGGCCT	3 cut(s)	1049, 1433, 1829
Eco24I	GRGCYC	2 cut(s)	153, 1001
Eco32I	GATATC	1 cut(s)	2148
Eco47I	GGWCC	5 cut(s)	112, 292, 743, 1361, 1380
Eco52I	CGGCCG	2 cut(s)	47, 97
Eco53kI	GAGCTC	1 cut(s)	999
Eco57I	CTGAAG	5 cut(s)	537, 570, 1230, 1910, 1983
EcoICRI	GAGCTC	1 cut(s)	999
EcoNI	CCTNNNNNAGG	1 cut(s)	959
EcoO109I	RGGNCCY	1 cut(s)	1380
EcoRI	GAATTC	1 cut(s)	1443
EcoRII	CCWGG	6 cut(s)	152, 460, 781, 1264, 1661, 1750
EcoRV	GATATC	1 cut(s)	2148
EcoT14I	CCWWGG	3 cut(s)	390, 2043, 2106
EcoT22I	ATGCAT	1 cut(s)	420
EcoT38I	GRGCYC	2 cut(s)	153, 1001
ErhI	CCWWGG	3 cut(s)	390, 2043, 2106
FaqI	GGGAC	4 cut(s)	292, 414, 780, 1366
FauI	CCCGC	4 cut(s)	222, 317, 1391, 1933
FbaI	TGATCA	4 cut(s)	66, 190, 1060, 1348
FblI	GTMKAC	2 cut(s)	540, 951
Fnu4HI	GCNGC	6 cut(s)	26, 29, 1113, 2023, 2049, 2052
FokI	GGATG	9 cut(s)	107, 364, 461, 941, 959, 1050, 1319, 1869, 1910
FriOI	GRGCYC	2 cut(s)	153, 1001
Fsp4HI	GCNGC	6 cut(s)	26, 29, 1113, 2023, 2049, 2052
FspBI	CTAG	6 cut(s)	869, 1242, 1365, 1719, 1743, 1815
GlaI	GCGC	2 cut(s)	83, 401
GluI	GCNGC	6 cut(s)	26, 29, 1113, 2023, 2049, 2052
GsaI	CCCAGC	1 cut(s)	35
GsuI	CTGGAG	3 cut(s)	597, 1200, 1656
HaeIII	GGCC	9 cut(s)	49, 99, 381, 1049, 1233, 1433, 1517, 1829, 2070
HapII	CCGG	4 cut(s)	46, 285, 549, 764
HhaI	GCGC	2 cut(s)	84, 402
Hin1I	GRCGYC	1 cut(s)	135
Hin6I	GCGC	2 cut(s)	82, 400
HinP1I	GCGC	2 cut(s)	82, 400
HincII	GTYRAC	1 cut(s)	1014
HindII	GTYRAC	1 cut(s)	1014
HpaII	CCGG	4 cut(s)	46, 285, 549, 764
HphI	GGTGA	5 cut(s)	831, 843, 876, 1343, 1740
Hpy166II	GTNNAC	6 cut(s)	541, 884, 941, 952, 1014, 1748
Hpy8I	GTNNAC	6 cut(s)	541, 884, 941, 952, 1014, 1748
Hpy99I	CGWCG	2 cut(s)	55, 137
HpyAV	CCTTC	7 cut(s)	271, 283, 433, 505, 635, 1397, 1487
HpyCH4III	ACNGT	6 cut(s)	468, 665, 697, 713, 990, 1528
HpyCH4IV	ACGT	2 cut(s)	135, 362
HpyF10VI	GCNNNNNNNGC	4 cut(s)	263, 1153, 1728, 1835
HpyF3I	CTNAG	3 cut(s)	1512, 1687, 1704
HpySE526I	ACGT	2 cut(s)	135, 362
Hsp92I	GRCGYC	1 cut(s)	135
HspAI	GCGC	2 cut(s)	82, 400
Ksp22I	TGATCA	4 cut(s)	66, 190, 1060, 1348
LmnI	GCTCC	9 cut(s)	61, 148, 391, 442, 463, 1004, 1144, 1219, 1720
Lsp1109I	GCAGC	5 cut(s)	12, 1099, 2034, 2060, 2063
LweI	GCATC	5 cut(s)	253, 1229, 1688, 1888, 2063
MaeI	CTAG	6 cut(s)	869, 1242, 1365, 1719, 1743, 1815
MaeII	ACGT	2 cut(s)	135, 362
MaeIII	GTNAC	7 cut(s)	218, 1121, 1268, 1456, 1591, 1699, 2013
MfeI	CAATTG	1 cut(s)	1318
MflI	RGATCY	1 cut(s)	2139
MhlI	GDGCHC	4 cut(s)	153, 388, 675, 1001
MlsI	TGGCCA	1 cut(s)	1233
MluNI	TGGCCA	1 cut(s)	1233
MlyI	GAGTC	4 cut(s)	29, 644, 1019, 1546
MmeI	TCCRAC	2 cut(s)	273, 1875
Mox20I	TGGCCA	1 cut(s)	1233
Mph1103I	ATGCAT	1 cut(s)	420
MscI	TGGCCA	1 cut(s)	1233
MseI	TTAA	1 cut(s)	303
MslI	CAYNNNNRTG	2 cut(s)	1136, 1344
Msp20I	TGGCCA	1 cut(s)	1233
MspA1I	CMGCKG	2 cut(s)	31, 408
MspI	CCGG	4 cut(s)	46, 285, 549, 764
MspR9I	CCNGG	9 cut(s)	154, 286, 462, 549, 765, 783, 1266, 1663, 1752
MunI	CAATTG	1 cut(s)	1318
Mva1269I	GAATGC	4 cut(s)	847, 1114, 1498, 2038
MvaI	CCWGG	6 cut(s)	154, 462, 783, 1266, 1663, 1752
MvnI	CGCG	1 cut(s)	217
MwoI	GCNNNNNNNGC	4 cut(s)	263, 1153, 1728, 1835
NciI	CCSGG	3 cut(s)	286, 549, 765
NlaIV	GGNNCC	3 cut(s)	150, 1382, 1716
NmuCI	GTSAC	1 cut(s)	218
NsiI	ATGCAT	1 cut(s)	420
NspI	RCATGY	1 cut(s)	939
NspV	TTCGAA	1 cut(s)	1409
PasI	CCCWGGG	1 cut(s)	153
PceI	AGGCCT	3 cut(s)	1049, 1433, 1829
PciI	ACATGT	1 cut(s)	935
PctI	GAATGC	4 cut(s)	847, 1114, 1498, 2038
PfoI	TCCNGGA	2 cut(s)	460, 763
PkrI	GCNGC	6 cut(s)	27, 30, 1114, 2024, 2050, 2053
PleI	GAGTC	4 cut(s)	28, 643, 1018, 1545
PpsI	GAGTC	4 cut(s)	28, 643, 1018, 1545
PpuMI	RGGWCCY	1 cut(s)	1380
PscI	ACATGT	1 cut(s)	935
PsiI	TTATAA	1 cut(s)	906
Psp124BI	GAGCTC	1 cut(s)	1001
Psp5II	RGGWCCY	1 cut(s)	1380
Psp6I	CCWGG	6 cut(s)	152, 460, 781, 1264, 1661, 1750
PspFI	CCCAGC	1 cut(s)	31
PspGI	CCWGG	6 cut(s)	152, 460, 781, 1264, 1661, 1750
PspN4I	GGNNCC	3 cut(s)	150, 1382, 1716
PspPI	GGNCC	5 cut(s)	112, 292, 743, 1361, 1380
PspPPI	RGGWCCY	1 cut(s)	1380
PsuI	RGATCY	1 cut(s)	2139
PvuII	CAGCTG	1 cut(s)	408
RsaI	GTAC	2 cut(s)	454, 1530
RsaNI	GTAC	2 cut(s)	453, 1529
RseI	CAYNNNNRTG	2 cut(s)	1136, 1344
SacI	GAGCTC	1 cut(s)	1001
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	6 cut(s)	26, 29, 1113, 2023, 2049, 2052
Sau96I	GGNCC	5 cut(s)	112, 292, 743, 1361, 1380
SchI	GAGTC	4 cut(s)	29, 644, 1019, 1546
ScrFI	CCNGG	9 cut(s)	154, 286, 462, 549, 765, 783, 1266, 1663, 1752
SduI	GDGCHC	4 cut(s)	153, 388, 675, 1001
SfaNI	GCATC	5 cut(s)	253, 1229, 1688, 1888, 2063
SfcI	CTRYAG	2 cut(s)	373, 1435
SfuI	TTCGAA	1 cut(s)	1409
SinI	GGWCC	5 cut(s)	112, 292, 743, 1361, 1380
SmiMI	CAYNNNNRTG	2 cut(s)	1136, 1344
SmlI	CTYRAG	3 cut(s)	86, 890, 1392
SmoI	CTYRAG	3 cut(s)	86, 890, 1392
SpeI	ACTAGT	1 cut(s)	1742
SseBI	AGGCCT	3 cut(s)	1049, 1433, 1829
SsiI	CCGC	9 cut(s)	5, 29, 215, 295, 310, 1384, 1729, 1916, 1926
SspMI	CTAG	6 cut(s)	869, 1242, 1365, 1719, 1743, 1815
SstI	GAGCTC	1 cut(s)	1001
StuI	AGGCCT	3 cut(s)	1049, 1433, 1829
StyD4I	CCNGG	9 cut(s)	152, 284, 460, 547, 763, 781, 1264, 1661, 1750
StyI	CCWWGG	3 cut(s)	390, 2043, 2106
TaaI	ACNGT	6 cut(s)	468, 665, 697, 713, 990, 1528
TaiI	ACGT	2 cut(s)	138, 365
TaqI	TCGA	8 cut(s)	14, 132, 173, 969, 1223, 1295, 1409, 1578
TatI	WGTACW	1 cut(s)	1528
TauI	GCSGC	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	7 cut(s)	265, 473, 1048, 1351, 1516, 1941, 1966
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	5 cut(s)	25, 1112, 2022, 2048, 2051
Tsp45I	GTSAC	1 cut(s)	218
TspGWI	ACGGA	2 cut(s)	68, 1157
TspRI	CASTG	7 cut(s)	265, 473, 1048, 1351, 1516, 1941, 1966
VpaK11BI	GGWCC	5 cut(s)	112, 292, 743, 1361, 1380
XagI	CCTNNNNNAGG	1 cut(s)	959
XapI	RAATTY	2 cut(s)	1405, 1443
XceI	RCATGY	1 cut(s)	939
XmiI	GTMKAC	2 cut(s)	540, 951
XspI	CTAG	6 cut(s)	869, 1242, 1365, 1719, 1743, 1815
ZraI	GACGTC	1 cut(s)	136
Zsp2I	ATGCAT	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.