Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008594

Physical Location & Seq

Genomic Coordinates Forward (+)

61917132 .. 61925080

Gene Structure 7949 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004751

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2811 bp

ATGAGCAATAACACGGAGAGCTCAAATTGCGAGCCTCCTGACCTTGAGAAGCAGCAGCACCGTGACGGCGGAGCTGAGGCGGTTACCTCCATTCCCGATTCTTCTGCCGTTGAGGATACGGTGCCGCCGCTTCTGAACGTCGTCGTTTCCGAACCACTACCGGCTCCGCCCGCCGCCACCGCCAATTCTTCCAAGGAGGTTAAGGGACAGCATTCCAGAAACTCCAGCGCTCATGAACAATGCAGGGTGTGTCAGCAGGATAAAGATGAAGCTTTGATTGATCTCGGATGCCATTGTCGAGGTGAACTTGCGAAAGCGCACAGATCATGTATAGACACTTGGTTTCAATCCAAAGGATCAAACAAATGCGAGATTTGCCAAGGGGTAGCTACGAATGTGTCATCTCCAGAATCCCAGCCAACTACAAATTATTGGGTTTGGAGAATTGAAACAACCTATCGATCGCAAAACCCAGTCCAGAGAATTGGGAAAGTGAGCGAAGACGACGACGACGACGACGATCGAGCTCAGATGGCGGTGTTGTCGATGGATTCGCTGCCGCTGGGGTTCCGATTCCGGCCGACGGACGAGGAGCTGATCAACCACTACCTGCGCCTCAAGATCAACGGCCGTCATTCCGAGGTCCAAGTCATCCCGGAAATCGACGTCTGCAAATGGGAGCCCTGGGATTTGCCAAAGCTATCGATGATAAAGTCGGATGATCAGGAATGGTTCTTCTTCTGCCCGCGTGACAGGAAATATCCGAATGGTCATCGTTCCAATAGAGCCACAGATGCTGGCTACTGGAAGGCAACCGGGAAGGACCGCACCATTAAGTCCCGCCAGTTCAAGTCTGCTACCAATAACACGGGCTTGGTTGGGATGAAGAAGACGTTGGTTTTCTACAGAGGCCGTGCTCCCAAGGGCGAGCGTACCAGCTGGATCATGCATGAGTATCGTCCCACCCAGAAGGAGCTGGATGGTACTGCTCCTGGACAGTGTGCCTTTGTTCTGTGTCGCCTGTTCCATAAACCAGAGGAGAAGGCTGAAGTTTTAAAGTATGATGAAGTAGACCAACCTGGCTTATCTCCTACCACCTCTCCTGATGAGACATCTTCAGATATAGTTCAGGAATCAGCAACTCCAGATATGAAAGGTGGAAAGGAATCAGAAGGTATATCGAGCTGGAATGGCAGTTTTGACCACATGACCCCTGATACTCTGACTGTGCCACCTAGTGACAGTTATATGGCTTCTGATGTGGAAGTCTATGGACCAGAAGACACAATCTTTCCGGGACATTATCATCTGCCAGGAGAAGTGGGGTTCTATGAGCCCAATGAACCCACGATTGACTGCAAAATCTTTTCACCATCGCATTCACCATTCAATGCAGAGCTAGATTATATGGGTTCACCTCTTGAGTTTGGCAATTATAACAATGGATCGCATTTTCAGGATGGCACATGTGAACAGGATGTATACCCCACAGAGGTGTTCGATGAGGTTGGCAATAAACATTATGAGAGCTCCTGTGAGGAGTCAACCAGTCAGAAGAACTTGGTTGGAGGCAGTGAGGCTTATCTATCTGATCGTTCATTCATGTTGCAAGCCATACCACCAGAAAACTCATCGCTGAATGGTGCATGGGGTTACACAGACACCAAAATGAATGAGCATAATCTGGACATTAGAGCTCGTGGCTTGTCCAATGAGCAATTTGATCCTTCCTACCAAGCTGAACCTCCAGCAACGATTTATGACCATAAACCTAGAATGGAAAATATCGGTTATCCCGGTAACTCATATGCTGATTCTGCTGTGTCGAATAATTTGGATGAATCTACCAATTGGAAGAATGGTGATAACCATAGCAGTGATCAAGTTGGTGGACCTAGAATCATCATCAGGTCCCGCCTTCCTCAAGATCGACCAAATTCGAACCTTGGGAATCAGGGAGAGGCCTACAGAAGAATTCGTTTAGTAGTTGTTAACCATACAAGGGTTTCAAACCATAGCAAAGAAGAAGATGAAGGGCATTCAATTATCACTGAGGACAGAGAAACTGTACAGGAGAGTCTTACCTCTGATGAACGGGAGGAAGTTCATGCAATAATCGATGAGGAAGAAGTAACCAGTAGGGATTATTCTGCTAACAATGATTCCGATCTTGTTGGTAAAACTGGAATCAGTTGTAAGACCAGGCAACCTCCAGAGGCATCAAACTCAGACAAACCCATTACTCAGGGCACGGCTCCTAGAAGAATCCGCTTGGCTATGACTAGTTCACCTGGGTCAGTTGCCGATAGTAATGTGAGAGATACAAAGCACGGGCAAGAAGATGAAGTGGAATCTAGTATTATTGAGGCCTGCGAAGCCATAGAGAAAACTCCTAATCTGAACAAGCAGGAGATAGAGTGTCATCCTCTGAAGTTGGATGCGAGCGGGAAAATTGCGGAAGAGCCCTCAACAACACTGATTGATGAGAACAAGAAAACCACTGAAGAAGTCGCAACAAAGATCAGTTGGGATTCCCTTGGTTCTAACCATGTTCATGGCCTTTTGTGGGATCTGGATATCCCATTAGATCTTTCACGTTGCAAGGAAGAGGCAGGCAGCATAGGCCTGGCGGAGATGATGGAGGAGTACACGGCGTTGCTGGCCAGGATTCTGGAGCACATGTTCCAGTCTGCACCTTTTCCGAGGAGGGTTCGGTTTCTGATTCTCAGAAACCTTCCTTTTGTGTCCACGTACCCTCTTCTTCTTCCTCCTCCTCCTCGTCCTTTGTTTGGAGCCCCTGCTGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009962 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031347 GO:0031349 GO:0031984 GO:0032101 GO:0032103 GO:0033554 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044212 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071944 GO:0080090 GO:0080134 GO:0097159 GO:0098827 GO:0104004 GO:0140110 GO:1900424 GO:1900426 GO:1901363 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

937

Amino Acids

104.45

Weight (kDa)

4.92

Isoelectric Point (pI)

51.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	81 - 126	4e-11	RING-variant domain
NAM	PF02365	187 - 320	3.6e-47	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33060 AT1G33060 AT4G35580 AT4G35580 AT4G35580
fragaria_vesca	FvH4_5g10350 FvH4_5g10350
malus_domestica	MD00G1096600.v1.1 MD06G1124800.v1.1
prunus_persica	Prupe.5G135400_v2.0.a1 Prupe.5G135400_v2.0.a1
pyrus_communis	pycom06g11540 pycom14g11690
rosa_chinensis	RchiOBHm_Chr7g0187871
rosa_laevigata	RLG00000004751
rosa_multiflora	Rmu_ssc0000122.1_g000021
rosa_roxburghii	Rroxscaffold_3G00266990
rosa_rugosa	Rorug06G0484900
rosa_samantha	Rh7AG090100 Rh7BG091700 Rh7CG090800 Rh7DG092500
rosa_wichuraiana	Rw7G007780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1437
AatII	GACGTC	1 cut(s)	669
Acc36I	ACCTGC	1 cut(s)	618
AccB1I	GGYRCC	1 cut(s)	121
AccBSI	CCGCTC	1 cut(s)	2445
AccI	GTMKAC	2 cut(s)	1071, 1482
AccII	CGCG	1 cut(s)	748
AclWI	GGATC	5 cut(s)	364, 950, 1453, 1718, 2577
AcoI	YGGCCR	3 cut(s)	578, 628, 2661
AcsI	RAATTY	2 cut(s)	1936, 1974
AcuI	CTGAAG	4 cut(s)	1068, 1101, 2450, 2523
AcyI	GRCGYC	1 cut(s)	666
AdeI	CACNNNGTG	1 cut(s)	1238
AfaI	GTAC	5 cut(s)	934, 985, 2070, 2648, 2753
AfeI	AGCGCT	1 cut(s)	229
AfiI	CCNNNNNNNGG	5 cut(s)	583, 1492, 2002, 2566, 2789
AflIII	ACRYGT	2 cut(s)	1466, 2679
AgsI	TTSAA	6 cut(s)	347, 449, 850, 1390, 2010, 2043
AhlI	ACTAGT	1 cut(s)	2282
AjnI	CCWGG	8 cut(s)	683, 991, 1078, 1312, 2201, 2290, 2625, 2663
AjuI	GAANNNNNNNTTGG	2 cut(s)	878, 910
AleI	CACNNNNGTG	1 cut(s)	1493
AloI	GAACNNNNNNTCC	2 cut(s)	2666, 2698
Alw21I	GWGCWC	6 cut(s)	23, 529, 919, 1532, 1699, 2679
Alw26I	GTCTC	1 cut(s)	1103
AlwI	GGATC	5 cut(s)	364, 950, 1453, 1718, 2577
AlwNI	CAGNNNCTG	1 cut(s)	797
Aor51HI	AGCGCT	1 cut(s)	229
AoxI	GGCC	8 cut(s)	578, 628, 910, 1962, 2367, 2557, 2623, 2661
ApeKI	GCWGC	6 cut(s)	52, 55, 556, 2616, 2801, 2804
ApoI	RAATTY	2 cut(s)	1936, 1974
AspLEI	GCGC	3 cut(s)	230, 319, 615
AspS9I	GGNCC	5 cut(s)	643, 823, 1274, 1892, 1911
AsuC2I	CCSGG	4 cut(s)	656, 817, 1296, 1797
AsuHPI	GGTGA	6 cut(s)	314, 1362, 1374, 1407, 1874, 2280
AsuII	TTCGAA	1 cut(s)	1940
AvaII	GGWCC	5 cut(s)	643, 823, 1274, 1892, 1911
BaeGI	GKGCMC	1 cut(s)	2252
BalI	TGGCCA	1 cut(s)	2663
BanI	GGYRCC	1 cut(s)	121
BanII	GRGCYC	8 cut(s)	23, 529, 684, 1338, 1532, 1699, 2466, 2797
BauI	CACGAG	1 cut(s)	1698
BbsI	GAAGAC	3 cut(s)	507, 896, 1287
Bbv12I	GWGCWC	6 cut(s)	23, 529, 919, 1532, 1699, 2679
BbvCI	CCTCAGC	1 cut(s)	75
BbvI	GCAGC	6 cut(s)	64, 67, 543, 2628, 2788, 2791
BccI	CCATC	6 cut(s)	526, 541, 974, 1381, 1454, 2632
BceAI	ACGGC	7 cut(s)	82, 92, 615, 643, 897, 2268, 2667
BcgI	CGANNNNNNTGC	4 cut(s)	86, 120, 938, 972
BciT130I	CCWGG	8 cut(s)	685, 993, 1080, 1314, 2203, 2292, 2627, 2665
BciVI	GTATCC	1 cut(s)	109
BclI	TGATCA	3 cut(s)	597, 721, 1879
BcnI	CCSGG	4 cut(s)	656, 817, 1296, 1797
BcoDI	GTCTC	1 cut(s)	1103
BcuI	ACTAGT	1 cut(s)	2282
BfaI	CTAG	7 cut(s)	1236, 1400, 1773, 1896, 2259, 2283, 2355
BfmI	CTRYAG	2 cut(s)	904, 1966
BfoI	RGCGCY	1 cut(s)	231
BfuAI	ACCTGC	1 cut(s)	618
BfuI	GTATCC	1 cut(s)	109
BglII	AGATCT	1 cut(s)	2587
Bme18I	GGWCC	5 cut(s)	643, 823, 1274, 1892, 1911
BmgT120I	GGNCC	5 cut(s)	643, 823, 1274, 1892, 1911
BmiI	GGNNCC	7 cut(s)	123, 165, 569, 681, 1913, 2256, 2794
BmrI	ACTGGG	1 cut(s)	467
BmsI	GCATC	4 cut(s)	278, 784, 2228, 2428
BmuI	ACTGGG	1 cut(s)	467
BpiI	GAAGAC	3 cut(s)	507, 896, 1287
BpmI	CTGGAG	6 cut(s)	208, 390, 1128, 1731, 2196, 2693
Bpu10I	CCTNAGC	1 cut(s)	75
Bpu14I	TTCGAA	1 cut(s)	1940
BpuEI	CTTGAG	4 cut(s)	65, 602, 1442, 1908
BpuMI	CCSGG	4 cut(s)	656, 817, 1296, 1797
Bsa29I	ATCGAT	3 cut(s)	460, 704, 2118
BsaAI	YACGTR	1 cut(s)	2751
BsaBI	GATNNNNATC	1 cut(s)	2166
BsaHI	GRCGYC	1 cut(s)	666
BsaXI	ACNNNNNCTCC	6 cut(s)	1084, 1114, 2402, 2432, 2666, 2696
Bsc4I	CCNNNNNNNGG	5 cut(s)	583, 1492, 2002, 2566, 2789
Bse118I	RCCGGY	1 cut(s)	160
Bse1I	ACTGG	7 cut(s)	473, 809, 844, 1548, 2136, 2188, 2686
Bse8I	GATNNNNATC	1 cut(s)	2166
BseBI	CCWGG	8 cut(s)	685, 993, 1080, 1314, 2203, 2292, 2627, 2665
BseCI	ATCGAT	3 cut(s)	460, 704, 2118
BseJI	GATNNNNATC	1 cut(s)	2166
BseLI	CCNNNNNNNGG	5 cut(s)	583, 1492, 2002, 2566, 2789
BseMII	CTCAG	6 cut(s)	66, 542, 2043, 2241, 2258, 2740
BseNI	ACTGG	7 cut(s)	473, 809, 844, 1548, 2136, 2188, 2686
BseRI	GAGGAG	8 cut(s)	605, 1052, 1553, 2657, 2719, 2760, 2763, 2766
BseSI	GKGCMC	1 cut(s)	2252
BseX3I	CGGCCG	2 cut(s)	578, 628
BseXI	GCAGC	6 cut(s)	64, 67, 543, 2628, 2788, 2791
BseYI	CCCAGC	2 cut(s)	414, 562
BsgI	GTGCAG	1 cut(s)	2676
Bsh1236I	CGCG	1 cut(s)	748
Bsh1285I	CGRYCG	4 cut(s)	464, 523, 581, 631
BshFI	GGCC	8 cut(s)	580, 630, 912, 1964, 2369, 2559, 2625, 2663
BshNI	GGYRCC	1 cut(s)	121
BshVI	ATCGAT	3 cut(s)	460, 704, 2118
BsiEI	CGRYCG	4 cut(s)	464, 523, 581, 631
BsiHKAI	GWGCWC	6 cut(s)	23, 529, 919, 1532, 1699, 2679
BsiSI	CCGG	6 cut(s)	161, 577, 656, 816, 1295, 1797
BslFI	GGGAC	5 cut(s)	219, 823, 945, 1311, 1897
BslI	CCNNNNNNNGG	5 cut(s)	583, 1492, 2002, 2566, 2789
BsmAI	GTCTC	1 cut(s)	1103
BsmFI	GGGAC	5 cut(s)	219, 823, 945, 1311, 1897
BsmI	GAATGC	3 cut(s)	211, 1378, 2038
BsnI	GGCC	8 cut(s)	580, 630, 912, 1964, 2369, 2559, 2625, 2663
Bsp119I	TTCGAA	1 cut(s)	1940
Bsp1407I	TGTACA	1 cut(s)	2068
BspANI	GGCC	8 cut(s)	580, 630, 912, 1964, 2369, 2559, 2625, 2663
BspCNI	CTCAG	6 cut(s)	67, 541, 2044, 2240, 2257, 2739
BspDI	ATCGAT	3 cut(s)	460, 704, 2118
BspFNI	CGCG	1 cut(s)	748
BspHI	TCATGA	1 cut(s)	232
BspLI	GGNNCC	7 cut(s)	123, 165, 569, 681, 1913, 2256, 2794
BspMI	ACCTGC	1 cut(s)	618
BspPI	GGATC	5 cut(s)	364, 950, 1453, 1718, 2577
BspQI	GCTCTTC	1 cut(s)	2454
BspT104I	TTCGAA	1 cut(s)	1940
BspT107I	GGYRCC	1 cut(s)	121
BsrBI	CCGCTC	1 cut(s)	2445
BsrFI	RCCGGY	1 cut(s)	160
BsrGI	TGTACA	1 cut(s)	2068
BsrI	ACTGG	7 cut(s)	473, 809, 844, 1548, 2136, 2188, 2686
BssAI	RCCGGY	1 cut(s)	160
BssNAI	GTATAC	1 cut(s)	1483
BssNI	GRCGYC	1 cut(s)	666
BssSI	CACGAG	1 cut(s)	1698
BssT1I	CCWWGG	5 cut(s)	192, 379, 921, 1945, 2536
Bst1107I	GTATAC	1 cut(s)	1483
Bst2BI	CACGAG	1 cut(s)	1698
Bst2UI	CCWGG	8 cut(s)	685, 993, 1080, 1314, 2203, 2292, 2627, 2665
Bst4CI	ACNGT	6 cut(s)	62, 121, 999, 1228, 1244, 2068
Bst6I	CTCTTC	3 cut(s)	2454, 2601, 2763
BstACI	GRCGYC	1 cut(s)	666
BstAUI	TGTACA	1 cut(s)	2068
BstBAI	YACGTR	1 cut(s)	2751
BstBI	TTCGAA	1 cut(s)	1940
BstDEI	CTNAG	7 cut(s)	75, 528, 2052, 2227, 2244, 2726, 2808
BstEII	GGTNACC	1 cut(s)	82
BstFNI	CGCG	1 cut(s)	748
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	3 cut(s)	230, 319, 615
BstMAI	GTCTC	1 cut(s)	1103
BstMCI	CGRYCG	4 cut(s)	464, 523, 581, 631
BstNI	CCWGG	8 cut(s)	685, 993, 1080, 1314, 2203, 2292, 2627, 2665
BstNSI	RCATGY	2 cut(s)	1470, 2683
BstPI	GGTNACC	1 cut(s)	82
BstSFI	CTRYAG	2 cut(s)	904, 1966
BstSLI	GKGCMC	1 cut(s)	2252
BstUI	CGCG	1 cut(s)	748
BstV1I	GCAGC	6 cut(s)	64, 67, 543, 2628, 2788, 2791
BstV2I	GAAGAC	3 cut(s)	507, 896, 1287
BstX2I	RGATCY	2 cut(s)	2569, 2587
BstXI	CCANNNNNNTGG	3 cut(s)	485, 2555, 2671
BstYI	RGATCY	2 cut(s)	2569, 2587
BstZ17I	GTATAC	1 cut(s)	1483
BstZI	CGGCCG	2 cut(s)	578, 628
Bsu15I	ATCGAT	3 cut(s)	460, 704, 2118
BsuI	GTATCC	1 cut(s)	109
BsuRI	GGCC	8 cut(s)	580, 630, 912, 1964, 2369, 2559, 2625, 2663
BsuTUI	ATCGAT	3 cut(s)	460, 704, 2118
BtgZI	GCGATG	2 cut(s)	1359, 1617
BtsI	GCAGTG	2 cut(s)	1579, 1882
BtsIMutI	CAGTG	6 cut(s)	1004, 1579, 1882, 2049, 2474, 2499
BveI	ACCTGC	1 cut(s)	618
CaiI	CAGNNNCTG	1 cut(s)	797
CciI	TCATGA	1 cut(s)	232
CfoI	GCGC	3 cut(s)	230, 319, 615
Cfr10I	RCCGGY	1 cut(s)	160
Cfr13I	GGNCC	5 cut(s)	643, 823, 1274, 1892, 1911
ClaI	ATCGAT	3 cut(s)	460, 704, 2118
Csp6I	GTAC	5 cut(s)	933, 984, 2069, 2647, 2752
CviQI	GTAC	5 cut(s)	933, 984, 2069, 2647, 2752
DdeI	CTNAG	7 cut(s)	75, 528, 2052, 2227, 2244, 2726, 2808
DraI	TTTAAA	1 cut(s)	1056
DraIII	CACNNNGTG	1 cut(s)	1238
EaeI	YGGCCR	3 cut(s)	578, 628, 2661
EagI	CGGCCG	2 cut(s)	578, 628
Eam1104I	CTCTTC	3 cut(s)	2454, 2601, 2763
EarI	CTCTTC	3 cut(s)	2454, 2601, 2763
EciI	GGCGGA	3 cut(s)	84, 156, 2645
Ecl136II	GAGCTC	4 cut(s)	21, 527, 1530, 1697
EclXI	CGGCCG	2 cut(s)	578, 628
Eco130I	CCWWGG	5 cut(s)	192, 379, 921, 1945, 2536
Eco147I	AGGCCT	3 cut(s)	1964, 2369, 2625
Eco24I	GRGCYC	8 cut(s)	23, 529, 684, 1338, 1532, 1699, 2466, 2797
Eco32I	GATATC	1 cut(s)	2578
Eco47I	GGWCC	5 cut(s)	643, 823, 1274, 1892, 1911
Eco47III	AGCGCT	1 cut(s)	229
Eco52I	CGGCCG	2 cut(s)	578, 628
Eco53kI	GAGCTC	4 cut(s)	21, 527, 1530, 1697
Eco57I	CTGAAG	4 cut(s)	1068, 1101, 2450, 2523
Eco91I	GGTNACC	1 cut(s)	82
EcoICRI	GAGCTC	4 cut(s)	21, 527, 1530, 1697
EcoO109I	RGGNCCY	1 cut(s)	1911
EcoO65I	GGTNACC	1 cut(s)	82
EcoRI	GAATTC	1 cut(s)	1974
EcoRII	CCWGG	8 cut(s)	683, 991, 1078, 1312, 2201, 2290, 2625, 2663
EcoRV	GATATC	1 cut(s)	2578
EcoT14I	CCWWGG	5 cut(s)	192, 379, 921, 1945, 2536
EcoT22I	ATGCAT	1 cut(s)	951
EcoT38I	GRGCYC	8 cut(s)	23, 529, 684, 1338, 1532, 1699, 2466, 2797
ErhI	CCWWGG	5 cut(s)	192, 379, 921, 1945, 2536
FaqI	GGGAC	5 cut(s)	219, 823, 945, 1311, 1897
FauI	CCCGC	5 cut(s)	178, 753, 848, 1922, 2438
FauNDI	CATATG	1 cut(s)	1807
FbaI	TGATCA	3 cut(s)	597, 721, 1879
FblI	GTMKAC	2 cut(s)	1071, 1482
FriOI	GRGCYC	8 cut(s)	23, 529, 684, 1338, 1532, 1699, 2466, 2797
FspBI	CTAG	7 cut(s)	1236, 1400, 1773, 1896, 2259, 2283, 2355
GlaI	GCGC	3 cut(s)	229, 318, 614
GsaI	CCCAGC	2 cut(s)	418, 566
GsuI	CTGGAG	6 cut(s)	208, 390, 1128, 1731, 2196, 2693
HaeII	RGCGCY	1 cut(s)	231
HaeIII	GGCC	8 cut(s)	580, 630, 912, 1964, 2369, 2559, 2625, 2663
HapII	CCGG	6 cut(s)	161, 577, 656, 816, 1295, 1797
HhaI	GCGC	3 cut(s)	230, 319, 615
Hin1I	GRCGYC	1 cut(s)	666
Hin6I	GCGC	3 cut(s)	228, 317, 613
HinP1I	GCGC	3 cut(s)	228, 317, 613
HincII	GTYRAC	2 cut(s)	1545, 1993
HindII	GTYRAC	2 cut(s)	1545, 1993
HindIII	AAGCTT	1 cut(s)	270
HpaI	GTTAAC	1 cut(s)	1993
HpaII	CCGG	6 cut(s)	161, 577, 656, 816, 1295, 1797
HphI	GGTGA	6 cut(s)	314, 1362, 1374, 1407, 1874, 2280
Hpy99I	CGWCG	9 cut(s)	143, 146, 509, 512, 515, 518, 521, 586, 668
HpyAV	CCTTC	9 cut(s)	802, 814, 964, 1036, 1166, 1737, 1928, 2027, 2744
HpyCH4III	ACNGT	6 cut(s)	62, 121, 999, 1228, 1244, 2068
HpyCH4IV	ACGT	5 cut(s)	138, 666, 893, 2596, 2750
HpyF3I	CTNAG	7 cut(s)	75, 528, 2052, 2227, 2244, 2726, 2808
HpySE526I	ACGT	5 cut(s)	138, 666, 893, 2596, 2750
Hsp92I	GRCGYC	1 cut(s)	666
HspAI	GCGC	3 cut(s)	228, 317, 613
Ksp22I	TGATCA	3 cut(s)	597, 721, 1879
KspAI	GTTAAC	1 cut(s)	1993
LguI	GCTCTTC	1 cut(s)	2454
Lsp1109I	GCAGC	6 cut(s)	64, 67, 543, 2628, 2788, 2791
LweI	GCATC	4 cut(s)	278, 784, 2228, 2428
MaeI	CTAG	7 cut(s)	1236, 1400, 1773, 1896, 2259, 2283, 2355
MaeII	ACGT	5 cut(s)	138, 666, 893, 2596, 2750
MaeIII	GTNAC	7 cut(s)	62, 82, 749, 1238, 1652, 1799, 2131
MbiI	CCGCTC	1 cut(s)	2445
MfeI	CAATTG	1 cut(s)	1849
MflI	RGATCY	2 cut(s)	2569, 2587
MlsI	TGGCCA	1 cut(s)	2663
MluNI	TGGCCA	1 cut(s)	2663
MlyI	GAGTC	2 cut(s)	1550, 2086
MmeI	TCCRAC	3 cut(s)	696, 1546, 2415
Mox20I	TGGCCA	1 cut(s)	2663
Mph1103I	ATGCAT	1 cut(s)	951
MscI	TGGCCA	1 cut(s)	2663
MseI	TTAA	4 cut(s)	201, 834, 1055, 1992
MslI	CAYNNNNRTG	4 cut(s)	1493, 1667, 1875, 2553
Msp20I	TGGCCA	1 cut(s)	2663
MspA1I	CMGCKG	2 cut(s)	562, 939
MspI	CCGG	6 cut(s)	161, 577, 656, 816, 1295, 1797
MunI	CAATTG	1 cut(s)	1849
Mva1269I	GAATGC	3 cut(s)	211, 1378, 2038
MvaI	CCWGG	8 cut(s)	685, 993, 1080, 1314, 2203, 2292, 2627, 2665
MvnI	CGCG	1 cut(s)	748
NciI	CCSGG	4 cut(s)	656, 817, 1296, 1797
NdeI	CATATG	1 cut(s)	1807
NlaIV	GGNNCC	7 cut(s)	123, 165, 569, 681, 1913, 2256, 2794
NmuCI	GTSAC	3 cut(s)	62, 749, 1238
NsiI	ATGCAT	1 cut(s)	951
NspI	RCATGY	2 cut(s)	1470, 2683
NspV	TTCGAA	1 cut(s)	1940
OliI	CACNNNNGTG	1 cut(s)	1493
PagI	TCATGA	1 cut(s)	232
PasI	CCCWGGG	1 cut(s)	684
PceI	AGGCCT	3 cut(s)	1964, 2369, 2625
PciI	ACATGT	2 cut(s)	1466, 2679
PciSI	GCTCTTC	1 cut(s)	2454
PcsI	WCGNNNNNNNCGW	4 cut(s)	147, 510, 513, 516
PctI	GAATGC	3 cut(s)	211, 1378, 2038
PfoI	TCCNGGA	3 cut(s)	654, 991, 1294
Ple19I	CGATCG	2 cut(s)	464, 523
PleI	GAGTC	2 cut(s)	1549, 2085
PpsI	GAGTC	2 cut(s)	1549, 2085
Ppu21I	YACGTR	1 cut(s)	2751
PpuMI	RGGWCCY	1 cut(s)	1911
PscI	ACATGT	2 cut(s)	1466, 2679
PsiI	TTATAA	1 cut(s)	1437
Psp124BI	GAGCTC	4 cut(s)	23, 529, 1532, 1699
Psp5II	RGGWCCY	1 cut(s)	1911
Psp6I	CCWGG	8 cut(s)	683, 991, 1078, 1312, 2201, 2290, 2625, 2663
PspEI	GGTNACC	1 cut(s)	82
PspFI	CCCAGC	2 cut(s)	414, 562
PspGI	CCWGG	8 cut(s)	683, 991, 1078, 1312, 2201, 2290, 2625, 2663
PspN4I	GGNNCC	7 cut(s)	123, 165, 569, 681, 1913, 2256, 2794
PspPI	GGNCC	5 cut(s)	643, 823, 1274, 1892, 1911
PspPPI	RGGWCCY	1 cut(s)	1911
PstNI	CAGNNNCTG	1 cut(s)	797
PsuI	RGATCY	2 cut(s)	2569, 2587
PvuI	CGATCG	2 cut(s)	464, 523
PvuII	CAGCTG	1 cut(s)	939
RsaI	GTAC	5 cut(s)	934, 985, 2070, 2648, 2753
RsaNI	GTAC	5 cut(s)	933, 984, 2069, 2647, 2752
RseI	CAYNNNNRTG	4 cut(s)	1493, 1667, 1875, 2553
SacI	GAGCTC	4 cut(s)	23, 529, 1532, 1699
SapI	GCTCTTC	1 cut(s)	2454
SaqAI	TTAA	4 cut(s)	201, 834, 1055, 1992
Sau96I	GGNCC	5 cut(s)	643, 823, 1274, 1892, 1911
SchI	GAGTC	2 cut(s)	1550, 2086
SfaNI	GCATC	4 cut(s)	278, 784, 2228, 2428
SfcI	CTRYAG	2 cut(s)	904, 1966
SfuI	TTCGAA	1 cut(s)	1940
SinI	GGWCC	5 cut(s)	643, 823, 1274, 1892, 1911
SmiMI	CAYNNNNRTG	4 cut(s)	1493, 1667, 1875, 2553
SmlI	CTYRAG	4 cut(s)	44, 617, 1421, 1923
SmoI	CTYRAG	4 cut(s)	44, 617, 1421, 1923
SpeI	ACTAGT	1 cut(s)	2282
SseBI	AGGCCT	3 cut(s)	1964, 2369, 2625
SspMI	CTAG	7 cut(s)	1236, 1400, 1773, 1896, 2259, 2283, 2355
SstI	GAGCTC	4 cut(s)	23, 529, 1532, 1699
StuI	AGGCCT	3 cut(s)	1964, 2369, 2625
StyI	CCWWGG	5 cut(s)	192, 379, 921, 1945, 2536
TaaI	ACNGT	6 cut(s)	62, 121, 999, 1228, 1244, 2068
TaiI	ACGT	5 cut(s)	141, 669, 896, 2599, 2753
TatI	WGTACW	2 cut(s)	2068, 2646
TauI	GCSGC	4 cut(s)	127, 130, 176, 562
Tru1I	TTAA	4 cut(s)	201, 834, 1055, 1992
Tru9I	TTAA	4 cut(s)	201, 834, 1055, 1992
TscAI	CASTG	6 cut(s)	1004, 1579, 1882, 2056, 2481, 2506
TseFI	GTSAC	3 cut(s)	62, 749, 1238
TseI	GCWGC	6 cut(s)	52, 55, 556, 2616, 2801, 2804
Tsp45I	GTSAC	3 cut(s)	62, 749, 1238
TspGWI	ACGGA	2 cut(s)	29, 599
TspRI	CASTG	6 cut(s)	1004, 1579, 1882, 2056, 2481, 2506
VpaK11BI	GGWCC	5 cut(s)	643, 823, 1274, 1892, 1911
XapI	RAATTY	2 cut(s)	1936, 1974
XceI	RCATGY	2 cut(s)	1470, 2683
XmiI	GTMKAC	2 cut(s)	1071, 1482
XspI	CTAG	7 cut(s)	1236, 1400, 1773, 1896, 2259, 2283, 2355
ZraI	GACGTC	1 cut(s)	667
Zsp2I	ATGCAT	1 cut(s)	951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.