Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0008594

Physical Location & Seq

Genomic Coordinates Forward (+)

20298949 .. 20303133

Gene Structure 4185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1096600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2580 bp

ATGGCGGAGCTGTCGATGGAATCGCTGCCGTTGGGGTTTCGGTTCAGGCCGACGGACGAGGAGCTCATCAACCACTACCTCCGGCTGAAGATCAACGGCCATGATTCCGAGGTCCAAGTCATCCCGGAAATCGATGTCTGCAGATGGGAGCCCTGGGATTTGCCAAAACTATCGGTGATAAAGTCAGATGATCAAGAGTGGTTCTTCTTCTGCCCCCGCGATAGGAAGTACCCAAATGGCCATCGGTCCAATAGAGCAACTGATGCTGGATACTGGAAGGCCACGGGGAAGGACCGGACCATCAAGTCCCGCCAGTGCAAGTTTGCCACTAACAGCAATGGCCAAGTTGGAATGAAGAAGACCTTGGTTTTCTACAGAGGCCGTGCCCCCAAGGGCGAGCGTACCAGCTGGATCATGCACGAGTATCGTGCTACTCAGAAGGAACTCGATGGGACTGCTCCCAGCCAGGGTGCCTTTGTTCTCTGTCGCTTGTTCCATAAACCAGAAGAGAAGGCTGATGAACCAAAGCATGACGAAGTTGAACAAACTGGTCTATCTCCTACCACAACTAAGTCTTCTCCTGATGAGTCCTCAGATATAGTTCAGGAAACAGCTACATCAGAGATGCAAGGTGAAAAGCAGTCAGAAGGTATCATGAGGTGGTTGACTGATAAGTCTGACAAAGTGACCCCTGATGCTTTTTGTCAGCTACCTGTTGACAGTTTTATGGCCTCTGATATGGAAGATCATGGAGCAGTAGAAACAGGAATCCAGGGGCATCTGACAATGGAAGAAAATCCGGCATTCTATGAGTCTTTGGGCGGCCTGGACGATAGCAAAGACTTCTCACCGTTGCATTCGCAGATTAATGCAGAGCTGGAACATTATGTGGGTTCACCTTTTACCAGTGACTTTGGCAATTATGATAATGTATTGCATTTTCAAGACGGCACATGTGAACGGGATGTACCCCTCAAGGAGTTGTTTGATGAGTTCAGCAATAGCCATTATGGGAGCTCCTGTGAGGAGTCAACTAGTCAGAAGAACTTGGTCGTTGGAAATGAGACTTATCTATCTGGTCATGCATGCACCACGCTGCCAGGAAACTCATGTTTCAATGGTGCATGGGGTAACACAGACGCCAAAATCGCCCAGAATGATTTGCAAAGGAGAGCATCTGGCTTGTACAATGAGCAATTTGGCTCCGAGGATCTGCAGAACACCTCATTTGGTTATTGGCAAGCTAAAGCTCAAGCATCATTTGATGACCGAAAACCTAGAATGGGAAATATGACAGACAGTTATTTATCTCAATGCTCATTTGCTGAGCAGTTTCCTGTGAGTTCAGTCAATGATGTGTCCAATAGTTTGCATGGATCTACCGGTTGGAAGAATCTTGATAACCACAGCGGTGATGATGTTGGTGGAACTGGAATCAAGACTAGGGCTCGACATCCTCAACTACAACCGAATATAGATAACTTTGTAGATCAGGGCTCTGCTGCAAGAAGACTTCATTTATTAGTGGACCGTTCAGTTTGGTCAATTACCAACGGCAATGAGAGCGATGAAAACTACAGCACGGAAGAAGATGAAGTCCAATCAATTATTGCAGAGACTAGAGAGGATATACAGCAGAGCCCTACTTCTGATGAACAGGAGGAAGAGCATGCGATATTCAGCAACAAAGAAGAATGGTCCAGTACGAATAATTCTATTAACCATGGCTTTGATCCTGATGGTAGAAGTGGAATCATGATTAGGACTCGCCAGCCTCAACAACGATCAAATTCAGACAGTTCTGTAACTCAGGACACTGCTCATAGAAGAATCGGTTTGCAGATGAATATTTCATACGGGTCCATTGCCGATAGTAACGTGAGAGAGACAGATTACGGGGGAGAAGATGAAGTAGAATCTGCTAATACTGAGGCTAGAGAAGCTATACAGCAGAGTCTGGCCTCTGATGAACATGAGAAAGAGCATGCGGAAATCAACGATAAGGAAGACTTGGCCACTATGAAGAATTCCGTCAACTATGATTCCAATGTTGTAGGTAGATCCGGAATCAAGATGAAGGCCCCCGAGCCTCAACAACCATTAAGTTCAGGTGATTCTGCAACTCAGGCCCCTGCTTCTAGAAGAATCCGTTTGCAGATGAGTACTTCACCTCGGTCAGTTGTTGATAGCAATGTGAGAGATACAACCCCTGCTGAAGAAGATAATGTGCAGTCAACTATTTATGAGGTCAAGGAAGCCACGGAGAAGATTTCTAATTTCGATGAGCAGGAAGCAGAGTCCCGTCTTTTGAAGTCAGACATGGGCAGGAAAATTACCGATGGCTCACCAACAGAACTGGTTGATGAGAAGAGGGCTGCTGAAGAAGCCCCAATAACGTTGAGGTTAAGGACGGGAAGGGACGGTGCATCACCCAGCAGCCATATGGGGCTGTCAGTGTCTTCGAAGGAACTGCCCAAACACCACGGCCTGAGTCCTACATTTGTTATTTTGGTTGGTATTCCTTTAGCCGTAACCCTGTTCATAGCATTTAGTGGGATTTGGATGACATTTAGATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009962 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031347 GO:0031349 GO:0031984 GO:0032101 GO:0032103 GO:0033554 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044212 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071944 GO:0080090 GO:0080134 GO:0097159 GO:0098827 GO:0104004 GO:0140110 GO:1900424 GO:1900426 GO:1901363 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

860

Amino Acids

95.86

Weight (kDa)

4.88

Isoelectric Point (pI)

49.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	10 - 143	2.4e-47	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33060 AT1G33060 AT4G35580 AT4G35580 AT4G35580
fragaria_vesca	FvH4_5g10350 FvH4_5g10350
malus_domestica	MD00G1096600.v1.1 MD06G1124800.v1.1
prunus_persica	Prupe.5G135400_v2.0.a1 Prupe.5G135400_v2.0.a1
pyrus_communis	pycom06g11540 pycom14g11690
rosa_chinensis	RchiOBHm_Chr7g0187871
rosa_laevigata	RLG00000004751
rosa_multiflora	Rmu_ssc0000122.1_g000021
rosa_roxburghii	Rroxscaffold_3G00266990
rosa_rugosa	Rorug06G0484900
rosa_samantha	Rh7AG090100 Rh7BG091700 Rh7CG090800 Rh7DG092500
rosa_wichuraiana	Rw7G007780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	304, 673
AccB1I	GGYRCC	1 cut(s)	470
AccII	CGCG	1 cut(s)	219
AccIII	TCCGGA	1 cut(s)	2063
AciI	CCGC	6 cut(s)	5, 217, 310, 822, 1410, 1988
AclI	AACGTT	1 cut(s)	2396
AclWI	GGATC	5 cut(s)	419, 1218, 1384, 1727, 2055
AcoI	YGGCCR	4 cut(s)	97, 238, 340, 2013
AcsI	RAATTY	2 cut(s)	1789, 2026
AcuI	CTGAAG	3 cut(s)	107, 2235, 2400
AcyI	GRCGYC	1 cut(s)	1140
AfaI	GTAC	6 cut(s)	230, 403, 969, 1187, 1705, 2164
AfiI	CCNNNNNNNGG	3 cut(s)	222, 467, 1283
AflIII	ACRYGT	1 cut(s)	953
AgeI	ACCGGT	1 cut(s)	1382
AgsI	TTSAA	4 cut(s)	542, 944, 1117, 2311
AhlI	ACTAGT	1 cut(s)	1034
AjnI	CCWGG	5 cut(s)	152, 465, 771, 825, 1099
AjuI	GAANNNNNNNTTGG	2 cut(s)	347, 379
AleI	CACNNNNGTG	1 cut(s)	1410
Alw21I	GWGCWC	2 cut(s)	66, 1019
Alw26I	GTCTC	3 cut(s)	1058, 1610, 1880
AlwI	GGATC	5 cut(s)	419, 1218, 1384, 1727, 2055
AlwNI	CAGNNNCTG	1 cut(s)	1957
Ama87I	CYCGRG	1 cut(s)	2084
Aor13HI	TCCGGA	1 cut(s)	2063
ApeKI	GCWGC	5 cut(s)	25, 1096, 1502, 2375, 2436
ApoI	RAATTY	2 cut(s)	1789, 2026
AseI	ATTAAT	1 cut(s)	867
AsiGI	ACCGGT	1 cut(s)	1382
AspS9I	GGNCC	9 cut(s)	112, 246, 292, 297, 1528, 1698, 1860, 2080, 2128
AsuC2I	CCSGG	1 cut(s)	125
AsuHPI	GGTGA	9 cut(s)	187, 644, 840, 888, 1424, 2123, 2160, 2337, 2421
AsuII	TTCGAA	1 cut(s)	2462
AvaI	CYCGRG	1 cut(s)	2084
AvaII	GGWCC	7 cut(s)	112, 246, 292, 297, 1528, 1698, 1860
BaeGI	GKGCMC	1 cut(s)	388
BalI	TGGCCA	3 cut(s)	240, 342, 2015
BanI	GGYRCC	1 cut(s)	470
BanII	GRGCYC	6 cut(s)	66, 153, 1019, 1450, 1499, 1643
BauI	CACGAG	1 cut(s)	419
BbsI	GAAGAC	5 cut(s)	365, 567, 1516, 2013, 2451
Bbv12I	GWGCWC	2 cut(s)	66, 1019
BbvI	GCAGC	5 cut(s)	12, 1083, 1489, 2362, 2448
BccI	CCATC	7 cut(s)	10, 138, 249, 308, 443, 1733, 2333
BceAI	ACGGC	7 cut(s)	13, 112, 366, 964, 1570, 2500, 2513
BcgI	CGANNNNNNTGC	8 cut(s)	407, 410, 437, 441, 444, 471, 2452, 2486
BciT130I	CCWGG	5 cut(s)	154, 467, 773, 827, 1101
BciVI	GTATCC	1 cut(s)	263
BclI	TGATCA	1 cut(s)	190
BcnI	CCSGG	1 cut(s)	125
BcoDI	GTCTC	3 cut(s)	1058, 1610, 1880
BcuI	ACTAGT	1 cut(s)	1034
BfaI	CTAG	6 cut(s)	1035, 1278, 1443, 1620, 1935, 2139
BfmI	CTRYAG	4 cut(s)	139, 373, 1214, 1576
BfuI	GTATCC	1 cut(s)	263
BglII	AGATCT	1 cut(s)	2573
BisI	GCNGC	6 cut(s)	26, 823, 1097, 1503, 2376, 2437
BlpI	GCTNAGC	1 cut(s)	1326
BlsI	GCNGC	6 cut(s)	27, 824, 1098, 1504, 2377, 2438
BmcAI	AGTACT	1 cut(s)	2164
Bme1390I	CCNGG	6 cut(s)	125, 154, 467, 773, 827, 1101
Bme18I	GGWCC	7 cut(s)	112, 246, 292, 297, 1528, 1698, 1860
BmeT110I	CYCGRG	1 cut(s)	2084
BmgT120I	GGNCC	9 cut(s)	112, 246, 292, 297, 1528, 1698, 1860, 2080, 2128
BmiI	GGNNCC	6 cut(s)	150, 472, 1204, 1861, 2082, 2130
BmrFI	CCNGG	6 cut(s)	125, 154, 467, 773, 827, 1101
BmsI	GCATC	7 cut(s)	253, 615, 685, 787, 1184, 1265, 2435
BpiI	GAAGAC	5 cut(s)	365, 567, 1516, 2013, 2451
Bpu1102I	GCTNAGC	1 cut(s)	1326
Bpu14I	TTCGAA	1 cut(s)	2462
BpuEI	CTTGAG	2 cut(s)	959, 1236
BpuMI	CCSGG	1 cut(s)	125
Bsa29I	ATCGAT	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	1140
BsaWI	WCCGGW	3 cut(s)	294, 1382, 2063
BsaXI	ACNNNNNCTCC	2 cut(s)	1006, 1036
Bsc4I	CCNNNNNNNGG	3 cut(s)	222, 467, 1283
Bse118I	RCCGGY	1 cut(s)	1382
Bse1I	ACTGG	7 cut(s)	278, 313, 553, 906, 1435, 1701, 2361
Bse3DI	GCAATG	4 cut(s)	343, 1564, 1863, 2197
BseAI	TCCGGA	1 cut(s)	2063
BseBI	CCWGG	5 cut(s)	154, 467, 773, 827, 1101
BseCI	ATCGAT	1 cut(s)	132
BseGI	GGATG	4 cut(s)	120, 970, 1453, 2568
BseLI	CCNNNNNNNGG	3 cut(s)	222, 467, 1283
BseMI	GCAATG	4 cut(s)	343, 1564, 1863, 2197
BseMII	CTCAG	7 cut(s)	449, 606, 1317, 1823, 1920, 2138, 2480
BseNI	ACTGG	7 cut(s)	278, 313, 553, 906, 1435, 1701, 2361
BseRI	GAGGAG	2 cut(s)	74, 1040
BseSI	GKGCMC	1 cut(s)	388
BseXI	GCAGC	5 cut(s)	12, 1083, 1489, 2362, 2448
BseYI	CCCAGC	2 cut(s)	461, 2432
BsgI	GTGCAG	1 cut(s)	2249
Bsh1236I	CGCG	1 cut(s)	219
BshNI	GGYRCC	1 cut(s)	470
BshTI	ACCGGT	1 cut(s)	1382
BshVI	ATCGAT	1 cut(s)	132
BsiHKAI	GWGCWC	2 cut(s)	66, 1019
BsiHKCI	CYCGRG	1 cut(s)	2084
BsiSI	CCGG	6 cut(s)	82, 125, 295, 800, 1383, 2064
BslFI	GGGAC	4 cut(s)	292, 466, 2284, 2432
BslI	CCNNNNNNNGG	3 cut(s)	222, 467, 1283
BsmAI	GTCTC	3 cut(s)	1058, 1610, 1880
BsmFI	GGGAC	4 cut(s)	292, 466, 2284, 2432
BsmI	GAATGC	2 cut(s)	803, 856
BsoBI	CYCGRG	1 cut(s)	2084
Bsp119I	TTCGAA	1 cut(s)	2462
Bsp1286I	GDGCHC	7 cut(s)	66, 153, 388, 1019, 1450, 1499, 1643
Bsp13I	TCCGGA	1 cut(s)	2063
Bsp1407I	TGTACA	1 cut(s)	1185
Bsp1720I	GCTNAGC	1 cut(s)	1326
Bsp19I	CCATGG	1 cut(s)	1723
BspACI	CCGC	6 cut(s)	5, 217, 310, 822, 1410, 1988
BspCNI	CTCAG	7 cut(s)	448, 605, 1318, 1822, 1921, 2137, 2481
BspDI	ATCGAT	1 cut(s)	132
BspEI	TCCGGA	1 cut(s)	2063
BspFNI	CGCG	1 cut(s)	219
BspHI	TCATGA	2 cut(s)	654, 1755
BspLI	GGNNCC	6 cut(s)	150, 472, 1204, 1861, 2082, 2130
BspMAI	CTGCAG	2 cut(s)	143, 1218
BspPI	GGATC	5 cut(s)	419, 1218, 1384, 1727, 2055
BspQI	GCTCTTC	1 cut(s)	1659
BspT104I	TTCGAA	1 cut(s)	2462
BspT107I	GGYRCC	1 cut(s)	470
BsrDI	GCAATG	4 cut(s)	343, 1564, 1863, 2197
BsrFI	RCCGGY	1 cut(s)	1382
BsrGI	TGTACA	1 cut(s)	1185
BsrI	ACTGG	7 cut(s)	278, 313, 553, 906, 1435, 1701, 2361
BssAI	RCCGGY	1 cut(s)	1382
BssNI	GRCGYC	1 cut(s)	1140
BssSI	CACGAG	1 cut(s)	419
BssT1I	CCWWGG	3 cut(s)	363, 390, 1723
Bst2BI	CACGAG	1 cut(s)	419
Bst2UI	CCWGG	5 cut(s)	154, 467, 773, 827, 1101
Bst4CI	ACNGT	6 cut(s)	722, 852, 1301, 1532, 1799, 2423
Bst6I	CTCTTC	3 cut(s)	501, 1659, 2363
BstACI	GRCGYC	1 cut(s)	1140
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstAUI	TGTACA	1 cut(s)	1185
BstBI	TTCGAA	1 cut(s)	2462
BstC8I	GCNNGC	6 cut(s)	398, 1087, 1242, 1671, 1772, 1986
BstDEI	CTNAG	8 cut(s)	435, 570, 592, 1326, 1809, 1929, 2124, 2489
BstDSI	CCRYGG	4 cut(s)	282, 1723, 2259, 2482
BstF5I	GGATG	4 cut(s)	120, 970, 1453, 2568
BstFNI	CGCG	1 cut(s)	219
BstMAI	GTCTC	3 cut(s)	1058, 1610, 1880
BstMWI	GCNNNNNNNGC	6 cut(s)	263, 1148, 1563, 1940, 2126, 2384
BstNI	CCWGG	5 cut(s)	154, 467, 773, 827, 1101
BstNSI	RCATGY	4 cut(s)	957, 1089, 1673, 1988
BstSCI	CCNGG	6 cut(s)	123, 152, 465, 771, 825, 1099
BstSFI	CTRYAG	4 cut(s)	139, 373, 1214, 1576
BstSLI	GKGCMC	1 cut(s)	388
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	5 cut(s)	12, 1083, 1489, 2362, 2448
BstV2I	GAAGAC	5 cut(s)	365, 567, 1516, 2013, 2451
BstX2I	RGATCY	4 cut(s)	1210, 1376, 2060, 2573
BstYI	RGATCY	4 cut(s)	1210, 1376, 2060, 2573
Bsu15I	ATCGAT	1 cut(s)	132
BsuI	GTATCC	1 cut(s)	263
BsuTUI	ATCGAT	1 cut(s)	132
BtgI	CCRYGG	4 cut(s)	282, 1723, 2259, 2482
BtgZI	GCGATG	1 cut(s)	1581
BtsCI	GGATG	4 cut(s)	120, 970, 1453, 2568
BtsI	GCAGTG	1 cut(s)	1815
BtsIMutI	CAGTG	4 cut(s)	320, 913, 1815, 2460
Cac8I	GCNNGC	6 cut(s)	398, 1087, 1242, 1671, 1772, 1986
CaiI	CAGNNNCTG	1 cut(s)	1957
CciI	TCATGA	2 cut(s)	654, 1755
Cfr10I	RCCGGY	1 cut(s)	1382
Cfr13I	GGNCC	9 cut(s)	112, 246, 292, 297, 1528, 1698, 1860, 2080, 2128
ClaI	ATCGAT	1 cut(s)	132
CseI	GACGC	1 cut(s)	1148
Csp6I	GTAC	6 cut(s)	229, 402, 968, 1186, 1704, 2163
CspAI	ACCGGT	1 cut(s)	1382
CviQI	GTAC	6 cut(s)	229, 402, 968, 1186, 1704, 2163
DdeI	CTNAG	8 cut(s)	435, 570, 592, 1326, 1809, 1929, 2124, 2489
DrdI	GACNNNNNNGTC	2 cut(s)	304, 673
DseDI	GACNNNNNNGTC	2 cut(s)	304, 673
EaeI	YGGCCR	4 cut(s)	97, 238, 340, 2013
Eam1104I	CTCTTC	3 cut(s)	501, 1659, 2363
EarI	CTCTTC	3 cut(s)	501, 1659, 2363
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	2 cut(s)	64, 1017
Eco130I	CCWWGG	3 cut(s)	363, 390, 1723
Eco24I	GRGCYC	6 cut(s)	66, 153, 1019, 1450, 1499, 1643
Eco47I	GGWCC	7 cut(s)	112, 246, 292, 297, 1528, 1698, 1860
Eco53kI	GAGCTC	2 cut(s)	64, 1017
Eco57I	CTGAAG	3 cut(s)	107, 2235, 2400
Eco88I	CYCGRG	1 cut(s)	2084
EcoICRI	GAGCTC	2 cut(s)	64, 1017
EcoO109I	RGGNCCY	2 cut(s)	2080, 2128
EcoRI	GAATTC	1 cut(s)	2026
EcoRII	CCWGG	5 cut(s)	152, 465, 771, 825, 1099
EcoT14I	CCWWGG	3 cut(s)	363, 390, 1723
EcoT22I	ATGCAT	1 cut(s)	1087
EcoT38I	GRGCYC	6 cut(s)	66, 153, 1019, 1450, 1499, 1643
ErhI	CCWWGG	3 cut(s)	363, 390, 1723
FalI	AAGNNNNNCTT	4 cut(s)	347, 379, 1994, 2026
FaqI	GGGAC	4 cut(s)	292, 466, 2284, 2432
FauI	CCCGC	2 cut(s)	224, 317
FauNDI	CATATG	1 cut(s)	2442
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	6 cut(s)	26, 823, 1097, 1503, 2376, 2437
FokI	GGATG	4 cut(s)	107, 977, 1440, 2575
FriOI	GRGCYC	6 cut(s)	66, 153, 1019, 1450, 1499, 1643
Fsp4HI	GCNGC	6 cut(s)	26, 823, 1097, 1503, 2376, 2437
FspBI	CTAG	6 cut(s)	1035, 1278, 1443, 1620, 1935, 2139
GluI	GCNGC	6 cut(s)	26, 823, 1097, 1503, 2376, 2437
GsaI	CCCAGC	2 cut(s)	465, 2436
HapII	CCGG	6 cut(s)	82, 125, 295, 800, 1383, 2064
HgaI	GACGC	1 cut(s)	1148
Hin1I	GRCGYC	1 cut(s)	1140
HincII	GTYRAC	5 cut(s)	666, 718, 1032, 2035, 2235
HindII	GTYRAC	5 cut(s)	666, 718, 1032, 2035, 2235
HpaII	CCGG	6 cut(s)	82, 125, 295, 800, 1383, 2064
HphI	GGTGA	9 cut(s)	187, 644, 840, 888, 1424, 2123, 2160, 2337, 2421
Hpy166II	GTNNAC	8 cut(s)	666, 718, 896, 959, 1032, 1528, 2035, 2235
Hpy8I	GTNNAC	8 cut(s)	666, 718, 896, 959, 1032, 1528, 2035, 2235
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	8 cut(s)	271, 283, 433, 505, 641, 2071, 2409, 2458
HpyCH4III	ACNGT	6 cut(s)	722, 852, 1301, 1532, 1799, 2423
HpyCH4IV	ACGT	2 cut(s)	1878, 2396
HpyF10VI	GCNNNNNNNGC	6 cut(s)	263, 1148, 1563, 1940, 2126, 2384
HpyF3I	CTNAG	8 cut(s)	435, 570, 592, 1326, 1809, 1929, 2124, 2489
HpySE526I	ACGT	2 cut(s)	1878, 2396
Hsp92I	GRCGYC	1 cut(s)	1140
Kpn2I	TCCGGA	1 cut(s)	2063
Ksp22I	TGATCA	1 cut(s)	190
LguI	GCTCTTC	1 cut(s)	1659
LmnI	GCTCC	8 cut(s)	7, 61, 148, 463, 752, 1014, 1022, 1208
Lsp1109I	GCAGC	5 cut(s)	12, 1083, 1489, 2362, 2448
LweI	GCATC	7 cut(s)	253, 615, 685, 787, 1184, 1265, 2435
MaeI	CTAG	6 cut(s)	1035, 1278, 1443, 1620, 1935, 2139
MaeII	ACGT	2 cut(s)	1878, 2396
MaeIII	GTNAC	6 cut(s)	685, 908, 1130, 1804, 1874, 2530
MflI	RGATCY	4 cut(s)	1210, 1376, 2060, 2573
MhlI	GDGCHC	7 cut(s)	66, 153, 388, 1019, 1450, 1499, 1643
MlsI	TGGCCA	3 cut(s)	240, 342, 2015
MluCI	AATT	9 cut(s)	919, 1196, 1545, 1605, 1711, 1789, 2026, 2275, 2331
MluNI	TGGCCA	3 cut(s)	240, 342, 2015
MlyI	GAGTC	7 cut(s)	596, 821, 1037, 1759, 1963, 2306, 2500
MmeI	TCCRAC	3 cut(s)	328, 1036, 1367
Mox20I	TGGCCA	3 cut(s)	240, 342, 2015
Mph1103I	ATGCAT	1 cut(s)	1087
MroI	TCCGGA	1 cut(s)	2063
MscI	TGGCCA	3 cut(s)	240, 342, 2015
MseI	TTAA	4 cut(s)	867, 1719, 2102, 2405
MslI	CAYNNNNRTG	1 cut(s)	1410
Msp20I	TGGCCA	3 cut(s)	240, 342, 2015
MspA1I	CMGCKG	2 cut(s)	408, 1410
MspI	CCGG	6 cut(s)	82, 125, 295, 800, 1383, 2064
MspR9I	CCNGG	6 cut(s)	125, 154, 467, 773, 827, 1101
Mva1269I	GAATGC	2 cut(s)	803, 856
MvaI	CCWGG	5 cut(s)	154, 467, 773, 827, 1101
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	6 cut(s)	263, 1148, 1563, 1940, 2126, 2384
NciI	CCSGG	1 cut(s)	125
NcoI	CCATGG	1 cut(s)	1723
NdeI	CATATG	1 cut(s)	2442
NlaIV	GGNNCC	6 cut(s)	150, 472, 1204, 1861, 2082, 2130
NmuCI	GTSAC	2 cut(s)	685, 908
NsiI	ATGCAT	1 cut(s)	1087
NspI	RCATGY	4 cut(s)	957, 1089, 1673, 1988
NspV	TTCGAA	1 cut(s)	2462
OliI	CACNNNNGTG	1 cut(s)	1410
PaeI	GCATGC	3 cut(s)	1089, 1673, 1988
PagI	TCATGA	2 cut(s)	654, 1755
PasI	CCCWGGG	1 cut(s)	153
PciI	ACATGT	1 cut(s)	953
PciSI	GCTCTTC	1 cut(s)	1659
PctI	GAATGC	2 cut(s)	803, 856
PfoI	TCCNGGA	1 cut(s)	123
PinAI	ACCGGT	1 cut(s)	1382
PkrI	GCNGC	6 cut(s)	27, 824, 1098, 1504, 2377, 2438
PleI	GAGTC	7 cut(s)	595, 820, 1036, 1759, 1962, 2305, 2499
PpsI	GAGTC	7 cut(s)	595, 820, 1036, 1759, 1962, 2305, 2499
PscI	ACATGT	1 cut(s)	953
PshBI	ATTAAT	1 cut(s)	867
Psp124BI	GAGCTC	2 cut(s)	66, 1019
Psp1406I	AACGTT	1 cut(s)	2396
Psp6I	CCWGG	5 cut(s)	152, 465, 771, 825, 1099
PspFI	CCCAGC	2 cut(s)	461, 2432
PspGI	CCWGG	5 cut(s)	152, 465, 771, 825, 1099
PspN4I	GGNNCC	6 cut(s)	150, 472, 1204, 1861, 2082, 2130
PspPI	GGNCC	9 cut(s)	112, 246, 292, 297, 1528, 1698, 1860, 2080, 2128
PsrI	GAACNNNNNNTAC	2 cut(s)	951, 983
PstI	CTGCAG	2 cut(s)	143, 1218
PstNI	CAGNNNCTG	1 cut(s)	1957
PsuI	RGATCY	4 cut(s)	1210, 1376, 2060, 2573
PvuII	CAGCTG	1 cut(s)	408
RsaI	GTAC	6 cut(s)	230, 403, 969, 1187, 1705, 2164
RsaNI	GTAC	6 cut(s)	229, 402, 968, 1186, 1704, 2163
RseI	CAYNNNNRTG	1 cut(s)	1410
SacI	GAGCTC	2 cut(s)	66, 1019
SapI	GCTCTTC	1 cut(s)	1659
SaqAI	TTAA	4 cut(s)	867, 1719, 2102, 2405
SatI	GCNGC	6 cut(s)	26, 823, 1097, 1503, 2376, 2437
Sau96I	GGNCC	9 cut(s)	112, 246, 292, 297, 1528, 1698, 1860, 2080, 2128
ScaI	AGTACT	1 cut(s)	2164
SchI	GAGTC	7 cut(s)	596, 821, 1037, 1759, 1963, 2306, 2500
ScrFI	CCNGG	6 cut(s)	125, 154, 467, 773, 827, 1101
SduI	GDGCHC	7 cut(s)	66, 153, 388, 1019, 1450, 1499, 1643
SfaNI	GCATC	7 cut(s)	253, 615, 685, 787, 1184, 1265, 2435
SfcI	CTRYAG	4 cut(s)	139, 373, 1214, 1576
SfuI	TTCGAA	1 cut(s)	2462
SinI	GGWCC	7 cut(s)	112, 246, 292, 297, 1528, 1698, 1860
SmiMI	CAYNNNNRTG	1 cut(s)	1410
SmlI	CTYRAG	2 cut(s)	974, 1251
SmoI	CTYRAG	2 cut(s)	974, 1251
SpeI	ACTAGT	1 cut(s)	1034
SphI	GCATGC	3 cut(s)	1089, 1673, 1988
Sse9I	AATT	9 cut(s)	919, 1196, 1545, 1605, 1711, 1789, 2026, 2275, 2331
SsiI	CCGC	6 cut(s)	5, 217, 310, 822, 1410, 1988
SspI	AATATT	1 cut(s)	1849
SspMI	CTAG	6 cut(s)	1035, 1278, 1443, 1620, 1935, 2139
SstI	GAGCTC	2 cut(s)	66, 1019
StyD4I	CCNGG	6 cut(s)	123, 152, 465, 771, 825, 1099
StyI	CCWWGG	3 cut(s)	363, 390, 1723
TaaI	ACNGT	6 cut(s)	722, 852, 1301, 1532, 1799, 2423
TaiI	ACGT	2 cut(s)	1881, 2399
TaqI	TCGA	6 cut(s)	14, 132, 447, 1450, 2280, 2462
TaqII	GACCGA	3 cut(s)	234, 1284, 2163
TasI	AATT	9 cut(s)	919, 1196, 1545, 1605, 1711, 1789, 2026, 2275, 2331
TatI	WGTACW	2 cut(s)	1185, 2162
TauI	GCSGC	1 cut(s)	825
Tru1I	TTAA	4 cut(s)	867, 1719, 2102, 2405
Tru9I	TTAA	4 cut(s)	867, 1719, 2102, 2405
TscAI	CASTG	4 cut(s)	320, 913, 1822, 2460
TseFI	GTSAC	2 cut(s)	685, 908
TseI	GCWGC	5 cut(s)	25, 1096, 1502, 2375, 2436
Tsp45I	GTSAC	2 cut(s)	685, 908
TspGWI	ACGGA	5 cut(s)	68, 1598, 2020, 2138, 2276
TspRI	CASTG	4 cut(s)	320, 913, 1822, 2460
VpaK11BI	GGWCC	7 cut(s)	112, 246, 292, 297, 1528, 1698, 1860
VspI	ATTAAT	1 cut(s)	867
XapI	RAATTY	2 cut(s)	1789, 2026
XbaI	TCTAGA	1 cut(s)	2138
XceI	RCATGY	4 cut(s)	957, 1089, 1673, 1988
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2440
XspI	CTAG	6 cut(s)	1035, 1278, 1443, 1620, 1935, 2139
ZrmI	AGTACT	1 cut(s)	2164
Zsp2I	ATGCAT	1 cut(s)	1087

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.