Rorug06G0484900
NAC Family

NAC domain protein, IPR003441 source

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
60476957 .. 60477341
385 bp
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UTR
Exon/CDS
Intron
Rorug06G0484900.1

Sequence Viewer

Length: 261 bp
ATGTATGACAAGCTGTGTGCTGAATTTTATGATGACTATGCTGGTTATGAGGTGGTGCCACCCCAAGATTCCGAAAAACGTAACACCTGCTCCGACCAGTCTGCTCTTGTAGAGGGTCTTTCAAAGGCCACAAAATCCTCTCTGGATTCCCCTTGGAGGATTGGGACTCAATGTGCTCGATGCGATGGGAACCTGGGTTATGTTTTCAGAGGCAAGGGGTTTGCAGTGTGTGAAAATTGCTTCGACAAAGGTTCCTTCTGA

Protein Analysis

86

Amino Acids

9.54

Weight (kDa)

4.76

Isoelectric Point (pI)

46.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 95
Acc36I ACCTGC 1 cut(s) 95
AccB1I GGYRCC 1 cut(s) 55
AcsI RAATTY 1 cut(s) 23
AfiI CCNNNNNNNGG 1 cut(s) 156
AgsI TTSAA 1 cut(s) 123
AjnI CCWGG 1 cut(s) 192
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
Alw21I GWGCWC 1 cut(s) 178
AoxI GGCC 1 cut(s) 126
ApoI RAATTY 1 cut(s) 23
BanI GGYRCC 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 178
BccI CCATC 1 cut(s) 179
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciT130I CCWGG 1 cut(s) 194
BfuAI ACCTGC 1 cut(s) 95
Bme1390I CCNGG 1 cut(s) 194
BmiI GGNNCC 3 cut(s) 57, 191, 253
BmrFI CCNGG 1 cut(s) 194
BmsI GCATC 1 cut(s) 170
BsaJI CCNNGG 2 cut(s) 152, 193
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 97
BseBI CCWGG 1 cut(s) 194
BseDI CCNNGG 2 cut(s) 152, 193
BseLI CCNNNNNNNGG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 97
BshFI GGCC 1 cut(s) 128
BshNI GGYRCC 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 178
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 156
BsmFI GGGAC 1 cut(s) 178
BsnI GGCC 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 178
BspANI GGCC 1 cut(s) 128
BspLI GGNNCC 3 cut(s) 57, 191, 253
BspMI ACCTGC 1 cut(s) 95
BspT107I GGYRCC 1 cut(s) 55
BsrI ACTGG 1 cut(s) 97
BssECI CCNNGG 2 cut(s) 152, 193
BssT1I CCWWGG 1 cut(s) 152
Bst2UI CCWGG 1 cut(s) 194
BstNI CCWGG 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 192
BsuRI GGCC 1 cut(s) 128
BtgZI GCGATG 1 cut(s) 198
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 1 cut(s) 231
BveI ACCTGC 1 cut(s) 95
CviJI RGCY 2 cut(s) 13, 128
CviKI_1 RGCY 2 cut(s) 13, 128
Eco130I CCWWGG 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 192
EcoT14I CCWWGG 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 152
FaiI YATR 5 cut(s) 6, 30, 39, 48, 201
FaqI GGGAC 1 cut(s) 178
HaeIII GGCC 1 cut(s) 128
HinfI GANTC 3 cut(s) 68, 146, 166
Hpy188I TCNGA 4 cut(s) 73, 94, 209, 260
Hpy188III TCNNGA 1 cut(s) 143
HpyCH4IV ACGT 1 cut(s) 79
HpyCH4V TGCA 1 cut(s) 224
HpySE526I ACGT 1 cut(s) 79
LmnI GCTCC 1 cut(s) 95
LpnPI CCDG 6 cut(s) 27, 100, 110, 128, 179, 206
LweI GCATC 1 cut(s) 170
MaeII ACGT 1 cut(s) 79
MaeIII GTNAC 1 cut(s) 80
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 2 cut(s) 23, 235
MlyI GAGTC 1 cut(s) 160
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 5 cut(s) 43, 106, 148, 150, 203
MspR9I CCNGG 1 cut(s) 194
MvaI CCWGG 1 cut(s) 194
NlaIV GGNNCC 3 cut(s) 57, 191, 253
PaqCI CACCTGC 1 cut(s) 95
PfeI GAWTC 2 cut(s) 68, 146
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PspN4I GGNNCC 3 cut(s) 57, 191, 253
SchI GAGTC 1 cut(s) 160
ScrFI CCNGG 1 cut(s) 194
SduI GDGCHC 1 cut(s) 178
SetI ASST 6 cut(s) 15, 54, 82, 89, 195, 253
SfaNI GCATC 1 cut(s) 170
Sse9I AATT 2 cut(s) 23, 235
StyD4I CCNGG 1 cut(s) 192
StyI CCWWGG 1 cut(s) 152
TaiI ACGT 1 cut(s) 82
TaqI TCGA 2 cut(s) 178, 243
TasI AATT 2 cut(s) 23, 235
TfiI GAWTC 2 cut(s) 68, 146
TscAI CASTG 1 cut(s) 231
TspRI CASTG 1 cut(s) 231
XapI RAATTY 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.