AT4G35660

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014886
Physical Location & Seq
Forward (+)
16912509 .. 16913704
1196 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G35660.1

Sequence Viewer

Length: 867 bp
ATGGCTGAATCATCATCATCCTCTGTAGCGACTACGCATGTACCTGCTAGGTCTATTAGTTTGCCTACAAGACTAATCCATCCTAAAGCACAGAGAGTTGAAGAAGAACTGAAAAAGATTCAAGCTTTAAACTCTTCTTCATCAGCTTCTTCTCGGATCCAACTTGGACTTGCCAAGCTCGTTGAGCTCTATGACTTTGTCAATGAACAAGTCATAAGTTCTCCTCAAGGCCAACAAGCTCTTCGCCTTTGTCGCAACAGGAAACTTGTGGAAGACGCTCTTGATGAATCCATCGTGTTACTAGATGTCTCTGACTTCACAAGAGACTTGATAGGAACACTCATGGAGCATATTCAAGAACTTCAATCCGCTTTACGTAGACGCAGAGGAAATCTCTCTTCCGTTCAGTCCGAGATCCGAAGTTACATTAGCTTTCACAAGAAATCCAAGACCGAAGCAGCGAGACAAGTTAAATCCCTTGCAAGGAGACAAACAAAGAAAAAAGCTTGGGTTATCAAACAATCCGGTGGTCTTGATGAACATTCTTCTATGGTCTCCAATATTCTAAGGCAATCAAACGCATCGACGATCTCTATTTTACAGTCACTCTTGCAGTTTCTTTCTACTTCCGGTGAGAACAACGAGAAGAAAAATGGTGAAATTGGATGTGTAGATAACTCGATGATCCGTTCTTTCTTTGGAAGAATCATCGGTAGGAAGATGGTGAAGGAGATTGATGCGCAAACAATCCTCGGGAGATTAGCTATGGTTAATGTGAGCCTTGAGGCAATTAAGGATGAGTTAAGTTACTTATCTAGACGACTTATTCAACATAGAGCGTCTCTCTTGAACATTGTTACTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

288

Amino Acids

32.18

Weight (kDa)

9.96

Isoelectric Point (pI)

66.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 56 - 285 7e-51 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35660
fragaria_vesca FvH4_1g10680
malus_domestica MD02G1120700.v1.1 MD15G1234600.v1.1
prunus_persica Prupe.7G178300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0097851
rosa_laevigata RLG00000016740
rosa_multiflora Rmu_sc0000974.1_g000028 Rmu_sc0008442.1_g000011
rosa_roxburghii Rroxscaffold_2G00144530
rosa_rugosa Rorug02G0068600
rosa_samantha Rh2AG115300 Rh2BG118200 Rh2CG119800 Rh2DG119500
rosa_wichuraiana Rw2G009010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 741
Acc36I ACCTGC 1 cut(s) 52
AccI GTMKAC 1 cut(s) 379
AciI CCGC 1 cut(s) 369
AclWI GGATC 4 cut(s) 151, 164, 409, 679
AfaI GTAC 1 cut(s) 42
AfiI CCNNNNNNNGG 1 cut(s) 483
AgsI TTSAA 6 cut(s) 101, 122, 356, 365, 830, 850
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
AluBI AGCT 8 cut(s) 125, 146, 178, 187, 239, 432, 506, 764
AluI AGCT 8 cut(s) 125, 146, 178, 187, 239, 432, 506, 764
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 6 cut(s) 313, 318, 457, 481, 559, 846
AlwI GGATC 4 cut(s) 151, 164, 409, 679
Ama87I CYCGRG 1 cut(s) 752
AoxI GGCC 1 cut(s) 229
ApeKI GCWGC 1 cut(s) 458
AspLEI GCGC 1 cut(s) 742
AsuHPI GGTGA 3 cut(s) 644, 668, 736
AvaI CYCGRG 1 cut(s) 752
BaeI ACNNNNGTAYC 2 cut(s) 24, 57
BamHI GGATCC 1 cut(s) 156
BanII GRGCYC 1 cut(s) 189
BbsI GAAGAC 1 cut(s) 279
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 470
BccI CCATC 3 cut(s) 87, 299, 715
BcoDI GTCTC 6 cut(s) 313, 318, 457, 481, 559, 846
BfaI CTAG 3 cut(s) 48, 302, 816
BfmI CTRYAG 1 cut(s) 24
BfuAI ACCTGC 1 cut(s) 52
BisI GCNGC 1 cut(s) 459
BlsI GCNGC 1 cut(s) 460
BmeT110I CYCGRG 1 cut(s) 752
BmiI GGNNCC 1 cut(s) 158
BmsI GCATC 2 cut(s) 590, 727
BpiI GAAGAC 1 cut(s) 279
BplI GAGNNNNNCTC 4 cut(s) 378, 410, 828, 860
BpuEI CTTGAG 2 cut(s) 210, 803
BsaAI YACGTR 1 cut(s) 377
BsaI GGTCTC 1 cut(s) 559
BsaJI CCNNGG 1 cut(s) 751
BsaWI WCCGGW 2 cut(s) 524, 629
Bsc4I CCNNNNNNNGG 1 cut(s) 483
BseDI CCNNGG 1 cut(s) 751
BseGI GGATG 4 cut(s) 17, 79, 671, 802
BseLI CCNNNNNNNGG 1 cut(s) 483
BseRI GAGGAG 1 cut(s) 213
BseXI GCAGC 1 cut(s) 470
BshFI GGCC 1 cut(s) 231
BsiHKAI GWGCWC 1 cut(s) 189
BsiHKCI CYCGRG 1 cut(s) 752
BsiSI CCGG 2 cut(s) 525, 630
BslI CCNNNNNNNGG 1 cut(s) 483
BsmAI GTCTC 6 cut(s) 313, 318, 457, 481, 559, 846
BsmBI CGTCTC 1 cut(s) 846
BsnI GGCC 1 cut(s) 231
Bso31I GGTCTC 1 cut(s) 559
BsoBI CYCGRG 1 cut(s) 752
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 4 cut(s) 156, 414, 588, 684
BspACI CCGC 1 cut(s) 369
BspANI GGCC 1 cut(s) 231
BspLI GGNNCC 1 cut(s) 158
BspMI ACCTGC 1 cut(s) 52
BspPI GGATC 4 cut(s) 151, 164, 409, 679
BspQI GCTCTTC 1 cut(s) 246
BspTNI GGTCTC 1 cut(s) 559
BssECI CCNNGG 1 cut(s) 751
BssMI GATC 4 cut(s) 156, 414, 588, 684
Bst4CI ACNGT 1 cut(s) 603
Bst6I CTCTTC 3 cut(s) 139, 246, 403
BstBAI YACGTR 1 cut(s) 377
BstDEI CTNAG 1 cut(s) 566
BstF5I GGATG 4 cut(s) 17, 79, 671, 802
BstHHI GCGC 1 cut(s) 742
BstKTI GATC 4 cut(s) 159, 417, 591, 687
BstMAI GTCTC 6 cut(s) 313, 318, 457, 481, 559, 846
BstMBI GATC 4 cut(s) 156, 414, 588, 684
BstMWI GCNNNNNNNGC 2 cut(s) 184, 252
BstNSI RCATGY 1 cut(s) 41
BstSFI CTRYAG 1 cut(s) 24
BstSNI TACGTA 1 cut(s) 377
BstV1I GCAGC 1 cut(s) 470
BstV2I GAAGAC 1 cut(s) 279
BstX2I RGATCY 2 cut(s) 156, 414
BstYI RGATCY 2 cut(s) 156, 414
BsuRI GGCC 1 cut(s) 231
BtsCI GGATG 4 cut(s) 17, 79, 671, 802
BveI ACCTGC 1 cut(s) 52
CfoI GCGC 1 cut(s) 742
CseI GACGC 3 cut(s) 284, 390, 828
Csp6I GTAC 1 cut(s) 41
CviAII CATG 2 cut(s) 38, 343
CviQI GTAC 1 cut(s) 41
DdeI CTNAG 1 cut(s) 566
DpnI GATC 4 cut(s) 158, 416, 590, 686
DpnII GATC 4 cut(s) 156, 414, 588, 684
DraI TTTAAA 1 cut(s) 129
Eam1104I CTCTTC 3 cut(s) 139, 246, 403
EarI CTCTTC 3 cut(s) 139, 246, 403
Ecl136II GAGCTC 1 cut(s) 187
Eco105I TACGTA 1 cut(s) 377
Eco24I GRGCYC 1 cut(s) 189
Eco31I GGTCTC 1 cut(s) 559
Eco53kI GAGCTC 1 cut(s) 187
Eco88I CYCGRG 1 cut(s) 752
EcoICRI GAGCTC 1 cut(s) 187
EcoT38I GRGCYC 1 cut(s) 189
Esp3I CGTCTC 1 cut(s) 846
FaeI CATG 2 cut(s) 41, 346
FaiI YATR 9 cut(s) 39, 192, 215, 344, 351, 551, 767, 834, 865
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FatI CATG 2 cut(s) 37, 342
FblI GTMKAC 1 cut(s) 379
Fnu4HI GCNGC 1 cut(s) 459
FokI GGATG 4 cut(s) 4, 66, 678, 809
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 1 cut(s) 459
FspBI CTAG 3 cut(s) 48, 302, 816
FspI TGCGCA 1 cut(s) 741
GlaI GCGC 1 cut(s) 741
GluI GCNGC 1 cut(s) 459
HaeIII GGCC 1 cut(s) 231
HapII CCGG 2 cut(s) 525, 630
HgaI GACGC 3 cut(s) 284, 390, 828
HhaI GCGC 1 cut(s) 742
Hin1II CATG 2 cut(s) 41, 346
Hin6I GCGC 1 cut(s) 740
HinP1I GCGC 1 cut(s) 740
HindIII AAGCTT 2 cut(s) 123, 504
HinfI GANTC 4 cut(s) 8, 118, 287, 705
HpaII CCGG 2 cut(s) 525, 630
HphI GGTGA 3 cut(s) 644, 668, 736
Hpy166II GTNNAC 1 cut(s) 380
Hpy188I TCNGA 4 cut(s) 156, 313, 412, 419
Hpy188III TCNNGA 6 cut(s) 281, 356, 533, 754, 816, 847
Hpy8I GTNNAC 1 cut(s) 380
Hpy99I CGWCG 1 cut(s) 589
HpyAV CCTTC 1 cut(s) 721
HpyCH4III ACNGT 1 cut(s) 603
HpyCH4IV ACGT 1 cut(s) 376
HpyCH4V TGCA 2 cut(s) 482, 613
HpyF10VI GCNNNNNNNGC 2 cut(s) 184, 252
HpyF3I CTNAG 1 cut(s) 566
HpySE526I ACGT 1 cut(s) 376
Hsp92II CATG 2 cut(s) 41, 346
HspAI GCGC 1 cut(s) 740
Kzo9I GATC 4 cut(s) 156, 414, 588, 684
LguI GCTCTTC 1 cut(s) 246
LmnI GCTCC 1 cut(s) 346
LpnPI CCDG 4 cut(s) 57, 244, 538, 643
Lsp1109I GCAGC 1 cut(s) 470
LweI GCATC 2 cut(s) 590, 727
MaeI CTAG 3 cut(s) 48, 302, 816
MaeII ACGT 1 cut(s) 376
MaeIII GTNAC 5 cut(s) 297, 422, 603, 806, 856
MalI GATC 4 cut(s) 158, 416, 590, 686
MboI GATC 4 cut(s) 156, 414, 588, 684
MflI RGATCY 2 cut(s) 156, 414
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 2 cut(s) 660, 789
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 5 cut(s) 31, 234, 380, 761, 778
MseI TTAA 5 cut(s) 128, 471, 771, 792, 803
MspI CCGG 2 cut(s) 525, 630
MwoI GCNNNNNNNGC 2 cut(s) 184, 252
NdeII GATC 4 cut(s) 156, 414, 588, 684
NlaIII CATG 2 cut(s) 41, 346
NlaIV GGNNCC 1 cut(s) 158
NmuCI GTSAC 1 cut(s) 603
NsbI TGCGCA 1 cut(s) 741
NspI RCATGY 1 cut(s) 41
PciSI GCTCTTC 1 cut(s) 246
PfeI GAWTC 4 cut(s) 8, 118, 287, 705
PflFI GACNNNGTC 1 cut(s) 197
PkrI GCNGC 1 cut(s) 460
Ppu21I YACGTR 1 cut(s) 377
Psp124BI GAGCTC 1 cut(s) 189
PspN4I GGNNCC 1 cut(s) 158
PsuI RGATCY 2 cut(s) 156, 414
PsyI GACNNNGTC 1 cut(s) 197
RsaI GTAC 1 cut(s) 42
RsaNI GTAC 1 cut(s) 41
SacI GAGCTC 1 cut(s) 189
SapI GCTCTTC 1 cut(s) 246
SaqAI TTAA 5 cut(s) 128, 471, 771, 792, 803
SatI GCNGC 1 cut(s) 459
Sau3AI GATC 4 cut(s) 156, 414, 588, 684
SduI GDGCHC 1 cut(s) 189
SfaNI GCATC 2 cut(s) 590, 727
SfcI CTRYAG 1 cut(s) 24
SmlI CTYRAG 2 cut(s) 225, 782
SmoI CTYRAG 2 cut(s) 225, 782
SnaBI TACGTA 1 cut(s) 377
Sse9I AATT 2 cut(s) 660, 789
SsiI CCGC 1 cut(s) 369
SspI AATATT 1 cut(s) 562
SspMI CTAG 3 cut(s) 48, 302, 816
SstI GAGCTC 1 cut(s) 189
TaaI ACNGT 1 cut(s) 603
TaiI ACGT 1 cut(s) 379
TaqI TCGA 2 cut(s) 584, 680
TaqII GACCGA 1 cut(s) 467
TasI AATT 2 cut(s) 660, 789
TfiI GAWTC 4 cut(s) 8, 118, 287, 705
Tru1I TTAA 5 cut(s) 128, 471, 771, 792, 803
Tru9I TTAA 5 cut(s) 128, 471, 771, 792, 803
TseFI GTSAC 1 cut(s) 603
TseI GCWGC 1 cut(s) 458
Tsp45I GTSAC 1 cut(s) 603
TspDTI ATGAA 4 cut(s) 129, 219, 300, 552
TspGWI ACGGA 2 cut(s) 391, 677
Tth111I GACNNNGTC 1 cut(s) 197
XbaI TCTAGA 1 cut(s) 815
XceI RCATGY 1 cut(s) 41
XmiI GTMKAC 1 cut(s) 379
XspI CTAG 3 cut(s) 48, 302, 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.