MD15G1234600.v1.1

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0014886
Physical Location & Seq
Forward (+)
19256257 .. 19257054
798 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1234600.v1.1.491

Sequence Viewer

Length: 798 bp
ATGCAAATGGCTGTTTCATTTGCATCCATAGTGCCTGTGAGGTCTATTAGCCTACCATCTAGGCTAAACCCTAAATCCCAAAAAATTGAGTCAGATTTAAACAAGTTAAAGACTTCGAAATTTTCATGTTCTCTAGTGAATGAGGATCTTCTGGTGGGCTTGTCTGGTCTAGCAGATTTGTACTATTGCATTGAGGAACTTGTTCTCTCTCCAGTGACCCAACAAGCACTTCGCCACCAACAGTGCAAAGCACTTGTGGAAGAAGCACTTGATGGGTCAATTGGGTTGCTAGACTCATGTGGTAGTGCAAGAGACATTCTCTTGACAATGAAGGAAAATGTCCAGAACATCCAATCCGCATTCTGCAGGAGGACCGGAGATTCAAGCATCGAAACCAGCGTTCATTCCTACATTTGCTTCCGAAAAAAGGCGAAGAAGAGCATTGCAAAGACCCTCAGAGATTTGAAGAAAATGCAAACAAATCTTGGGTCCTTCCATCTCTTGGATTGTGACTACAATGTATTAATAGTACTTAAATTGTTAAAAGAGTTAAGTGATGTAACAATTTCTGTATTTCAATCCCTCTTCGTGTTTCTATCCACACCGGTGGCTAGCACAACGGGTAGCAAATGGTCATTGGTGTCGAAATTAATGGCGGCGAAATTTGCAGCAGCAGAAAAAGCCCAAAAGGTTTACAATGAAGTGGGAAGTGTTGATGATGCTCTTTGCTCACTCCATGGAAACATCAGAAAGAGTGATGCCAAGATTGATGTGCAGGTGGTTCAATGGAGAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

266

Amino Acids

29.24

Weight (kDa)

8.83

Isoelectric Point (pI)

40.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 53 - 262 3.8e-62 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35660
fragaria_vesca FvH4_1g10680
malus_domestica MD02G1120700.v1.1 MD15G1234600.v1.1
prunus_persica Prupe.7G178300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0097851
rosa_laevigata RLG00000016740
rosa_multiflora Rmu_sc0000974.1_g000028 Rmu_sc0008442.1_g000011
rosa_roxburghii Rroxscaffold_2G00144530
rosa_rugosa Rorug02G0068600
rosa_samantha Rh2AG115300 Rh2BG118200 Rh2CG119800 Rh2DG119500
rosa_wichuraiana Rw2G009010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 766
Acc36I ACCTGC 1 cut(s) 766
AccB7I CCANNNNNTGG 1 cut(s) 502
AciI CCGC 2 cut(s) 357, 656
AclWI GGATC 1 cut(s) 153
AcsI RAATTY 2 cut(s) 119, 662
AfaI GTAC 2 cut(s) 182, 531
AfiI CCNNNNNNNGG 2 cut(s) 427, 502
AgeI ACCGGT 1 cut(s) 604
AgsI TTSAA 4 cut(s) 384, 466, 578, 785
AjuI GAANNNNNNNTTGG 2 cut(s) 213, 245
AleI CACNNNNGTG 1 cut(s) 605
AloI GAACNNNNNNTCC 2 cut(s) 338, 370
Alw26I GTCTC 2 cut(s) 306, 786
AlwI GGATC 1 cut(s) 153
ApeKI GCWGC 2 cut(s) 668, 671
ApoI RAATTY 2 cut(s) 119, 662
ArsI GACNNNNNNTTYG 2 cut(s) 473, 505
AseI ATTAAT 2 cut(s) 524, 650
AsiGI ACCGGT 1 cut(s) 604
Asp700I GAANNNNTTC 1 cut(s) 201
AspS9I GGNCC 2 cut(s) 372, 489
AsuII TTCGAA 1 cut(s) 116
AsuNHI GCTAGC 1 cut(s) 611
AvaII GGWCC 2 cut(s) 372, 489
BbvI GCAGC 2 cut(s) 680, 683
BccI CCATC 3 cut(s) 64, 266, 504
BcoDI GTCTC 2 cut(s) 306, 786
BfaI CTAG 6 cut(s) 60, 134, 170, 290, 612, 796
BfmI CTRYAG 1 cut(s) 364
BfuAI ACCTGC 1 cut(s) 766
BisI GCNGC 3 cut(s) 657, 669, 672
BlsI GCNGC 3 cut(s) 658, 670, 673
BmcAI AGTACT 1 cut(s) 531
Bme18I GGWCC 2 cut(s) 372, 489
BmgT120I GGNCC 2 cut(s) 372, 489
BmiI GGNNCC 1 cut(s) 490
BmsI GCATC 4 cut(s) 32, 396, 709, 748
BmtI GCTAGC 1 cut(s) 615
BplI GAGNNNNNCTC 2 cut(s) 303, 335
BpmI CTGGAG 1 cut(s) 195
Bpu14I TTCGAA 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 736
BsaWI WCCGGW 2 cut(s) 374, 604
Bsc4I CCNNNNNNNGG 2 cut(s) 427, 502
Bse118I RCCGGY 1 cut(s) 604
Bse1I ACTGG 1 cut(s) 212
Bse3DI GCAATG 1 cut(s) 441
BseDI CCNNGG 1 cut(s) 736
BseGI GGATG 2 cut(s) 23, 348
BseLI CCNNNNNNNGG 2 cut(s) 427, 502
BseMI GCAATG 1 cut(s) 441
BseMII CTCAG 1 cut(s) 469
BseNI ACTGG 1 cut(s) 212
BseXI GCAGC 2 cut(s) 680, 683
BsgI GTGCAG 1 cut(s) 794
BshTI ACCGGT 1 cut(s) 604
BsiSI CCGG 2 cut(s) 375, 605
BslI CCNNNNNNNGG 2 cut(s) 427, 502
BsmAI GTCTC 2 cut(s) 306, 786
BsmI GAATGC 1 cut(s) 359
Bsp119I TTCGAA 1 cut(s) 116
Bsp143I GATC 1 cut(s) 145
Bsp19I CCATGG 1 cut(s) 736
BspACI CCGC 2 cut(s) 357, 656
BspCNI CTCAG 1 cut(s) 468
BspLI GGNNCC 1 cut(s) 490
BspMAI CTGCAG 1 cut(s) 368
BspMI ACCTGC 1 cut(s) 766
BspOI GCTAGC 1 cut(s) 615
BspPI GGATC 1 cut(s) 153
BspQI GCTCTTC 1 cut(s) 431
BspT104I TTCGAA 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 441
BsrFI RCCGGY 1 cut(s) 604
BsrI ACTGG 1 cut(s) 212
BssAI RCCGGY 1 cut(s) 604
BssECI CCNNGG 1 cut(s) 736
BssMI GATC 1 cut(s) 145
BssT1I CCWWGG 1 cut(s) 736
Bst4CI ACNGT 1 cut(s) 243
Bst6I CTCTTC 2 cut(s) 431, 590
BstBI TTCGAA 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 613
BstDEI CTNAG 1 cut(s) 455
BstDSI CCRYGG 1 cut(s) 736
BstF5I GGATG 2 cut(s) 23, 348
BstKTI GATC 1 cut(s) 148
BstMAI GTCTC 2 cut(s) 306, 786
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 2 cut(s) 665, 680
BstSFI CTRYAG 1 cut(s) 364
BstV1I GCAGC 2 cut(s) 680, 683
BstX2I RGATCY 1 cut(s) 145
BstXI CCANNNNNNTGG 1 cut(s) 607
BstYI RGATCY 1 cut(s) 145
BtgI CCRYGG 1 cut(s) 736
BtsCI GGATG 2 cut(s) 23, 348
BtsIMutI CAGTG 2 cut(s) 219, 248
BveI ACCTGC 1 cut(s) 766
Cac8I GCNNGC 1 cut(s) 613
Cfr10I RCCGGY 1 cut(s) 604
Cfr13I GGNCC 2 cut(s) 372, 489
Csp6I GTAC 2 cut(s) 181, 530
CspAI ACCGGT 1 cut(s) 604
CviAII CATG 3 cut(s) 126, 297, 737
CviJI RGCY 6 cut(s) 11, 51, 64, 159, 611, 683
CviKI_1 RGCY 6 cut(s) 11, 51, 64, 159, 611, 683
CviQI GTAC 2 cut(s) 181, 530
DdeI CTNAG 1 cut(s) 455
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
DraI TTTAAA 1 cut(s) 99
Eam1104I CTCTTC 2 cut(s) 431, 590
EarI CTCTTC 2 cut(s) 431, 590
Eco130I CCWWGG 1 cut(s) 736
Eco47I GGWCC 2 cut(s) 372, 489
EcoO109I RGGNCCY 1 cut(s) 489
EcoT14I CCWWGG 1 cut(s) 736
ErhI CCWWGG 1 cut(s) 736
FaeI CATG 3 cut(s) 129, 300, 740
FaiI YATR 4 cut(s) 29, 127, 298, 738
FalI AAGNNNNNCTT 2 cut(s) 252, 284
FatI CATG 3 cut(s) 125, 296, 736
Fnu4HI GCNGC 3 cut(s) 657, 669, 672
FokI GGATG 2 cut(s) 10, 335
Fsp4HI GCNGC 3 cut(s) 657, 669, 672
FspBI CTAG 6 cut(s) 60, 134, 170, 290, 612, 796
GluI GCNGC 3 cut(s) 657, 669, 672
GsuI CTGGAG 1 cut(s) 195
HapII CCGG 2 cut(s) 375, 605
Hin1II CATG 3 cut(s) 129, 300, 740
HinfI GANTC 3 cut(s) 89, 293, 380
HpaII CCGG 2 cut(s) 375, 605
Hpy166II GTNNAC 1 cut(s) 694
Hpy188I TCNGA 4 cut(s) 94, 422, 458, 749
Hpy188III TCNNGA 2 cut(s) 322, 343
Hpy8I GTNNAC 1 cut(s) 694
HpyAV CCTTC 2 cut(s) 325, 502
HpyCH4III ACNGT 1 cut(s) 243
HpyF10VI GCNNNNNNNGC 2 cut(s) 665, 680
HpyF3I CTNAG 1 cut(s) 455
Hsp92II CATG 3 cut(s) 129, 300, 740
Kzo9I GATC 1 cut(s) 145
LguI GCTCTTC 1 cut(s) 431
Lsp1109I GCAGC 2 cut(s) 680, 683
LweI GCATC 4 cut(s) 32, 396, 709, 748
MaeI CTAG 6 cut(s) 60, 134, 170, 290, 612, 796
MaeIII GTNAC 3 cut(s) 214, 509, 559
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 6 cut(s) 140, 272, 445, 448, 478, 577
MfeI CAATTG 1 cut(s) 279
MflI RGATCY 1 cut(s) 145
MluCI AATT 7 cut(s) 84, 119, 279, 536, 564, 647, 662
MlyI GAGTC 2 cut(s) 98, 287
MnlI CCTC 6 cut(s) 33, 136, 187, 363, 464, 593
MroXI GAANNNNTTC 1 cut(s) 201
MseI TTAA 7 cut(s) 98, 107, 524, 534, 542, 551, 650
MslI CAYNNNNRTG 1 cut(s) 605
MspI CCGG 2 cut(s) 375, 605
MunI CAATTG 1 cut(s) 279
Mva1269I GAATGC 1 cut(s) 359
MwoI GCNNNNNNNGC 2 cut(s) 665, 680
NcoI CCATGG 1 cut(s) 736
NdeII GATC 1 cut(s) 145
NheI GCTAGC 1 cut(s) 611
NlaIII CATG 3 cut(s) 129, 300, 740
NlaIV GGNNCC 1 cut(s) 490
NmuCI GTSAC 2 cut(s) 214, 509
NspV TTCGAA 1 cut(s) 116
OliI CACNNNNGTG 1 cut(s) 605
PaqCI CACCTGC 1 cut(s) 766
PciSI GCTCTTC 1 cut(s) 431
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PctI GAATGC 1 cut(s) 359
PdmI GAANNNNTTC 1 cut(s) 201
PfeI GAWTC 1 cut(s) 380
PflMI CCANNNNNTGG 1 cut(s) 502
PinAI ACCGGT 1 cut(s) 604
PkrI GCNGC 3 cut(s) 658, 670, 673
PleI GAGTC 2 cut(s) 97, 287
PpsI GAGTC 2 cut(s) 97, 287
PpuMI RGGWCCY 1 cut(s) 489
PshBI ATTAAT 2 cut(s) 524, 650
Psp5II RGGWCCY 1 cut(s) 489
PspN4I GGNNCC 1 cut(s) 490
PspPI GGNCC 2 cut(s) 372, 489
PspPPI RGGWCCY 1 cut(s) 489
PstI CTGCAG 1 cut(s) 368
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 2 cut(s) 182, 531
RsaNI GTAC 2 cut(s) 181, 530
RseI CAYNNNNRTG 1 cut(s) 605
SapI GCTCTTC 1 cut(s) 431
SaqAI TTAA 7 cut(s) 98, 107, 524, 534, 542, 551, 650
SatI GCNGC 3 cut(s) 657, 669, 672
Sau3AI GATC 1 cut(s) 145
Sau96I GGNCC 2 cut(s) 372, 489
ScaI AGTACT 1 cut(s) 531
SchI GAGTC 2 cut(s) 98, 287
SetI ASST 3 cut(s) 44, 693, 780
SfaNI GCATC 4 cut(s) 32, 396, 709, 748
SfcI CTRYAG 1 cut(s) 364
SfuI TTCGAA 1 cut(s) 116
SgrAI CRCCGGYG 1 cut(s) 604
SinI GGWCC 2 cut(s) 372, 489
SmiMI CAYNNNNRTG 1 cut(s) 605
Sse9I AATT 7 cut(s) 84, 119, 279, 536, 564, 647, 662
SsiI CCGC 2 cut(s) 357, 656
SspMI CTAG 6 cut(s) 60, 134, 170, 290, 612, 796
StyI CCWWGG 1 cut(s) 736
TaaI ACNGT 1 cut(s) 243
TaqI TCGA 3 cut(s) 116, 390, 644
TasI AATT 7 cut(s) 84, 119, 279, 536, 564, 647, 662
TatI WGTACW 2 cut(s) 180, 529
TauI GCSGC 1 cut(s) 659
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 7 cut(s) 98, 107, 524, 534, 542, 551, 650
Tru9I TTAA 7 cut(s) 98, 107, 524, 534, 542, 551, 650
TscAI CASTG 2 cut(s) 219, 248
TseFI GTSAC 2 cut(s) 214, 509
TseI GCWGC 2 cut(s) 668, 671
Tsp45I GTSAC 2 cut(s) 214, 509
TspDTI ATGAA 5 cut(s) 6, 114, 344, 392, 714
TspRI CASTG 2 cut(s) 219, 248
Van91I CCANNNNNTGG 1 cut(s) 502
VpaK11BI GGWCC 2 cut(s) 372, 489
VspI ATTAAT 2 cut(s) 524, 650
XapI RAATTY 2 cut(s) 119, 662
XmnI GAANNNNTTC 1 cut(s) 201
XspI CTAG 6 cut(s) 60, 134, 170, 290, 612, 796
ZrmI AGTACT 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.