Rh2AG115300

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0014886
Physical Location & Seq
Forward (+)
10318452 .. 10319300
849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG115300.1

Sequence Viewer

Length: 849 bp
ATGGCTCAACCAGTGAGGTCTATTAGCTTGCCCTCTAGGCTAAACCCCATTTCCCAAAAGATCGAGTCAGAGTTAAACAAGCTAAGGACTTGTAAATCTTCAAGTCCACTAGGGGAGTCTCTTTTAATCAGTTTGTCAGGTCTAGCAGAGCTGTTCAATTCCATTGAGGAACTGGTTCAATCTCAACTGACCCAACAAGCTCTTAGCCACCAGCAATGTAAATCACTAGTGGAAGAAACACTTGACGGGTCAGTTTGGTTGCTAGACTCATGTGGCAATGCAAGAGACTTGCTCTTGACGATGAAGCAACAGGTTCAAGACCTTCAATCCGCTTTACGTAGGAGGAATTCGAGCATTGATAGCAGTGTTCACGCTTACCTTTGCTTTAGAAAAAAGGCAAAGAAGAACGTCGCAAATAGTCTCAGAGAATTGAAGAAGATGGAGAGCAAATTTGGGTGTTTTTTGCATATGTTGGATGTAGACTACAATGTACTAATTGTGATCAAATTGTTAAGAGAATTAAGTGCTGTCACAATTTCTATGTTTCAGTCACTATTTGTGTTTCTATCCATGCCAGTGACTACTAGATGGTCATTGGCATCAAAACTGAAGGCTGTGACATTTGCGACGGCCTCGGAGAAAGACCAGAAGGTTTACAATGAAGTTGGAACTGTTGATGTTGCTCTCTTCTCACTACACAAGAGTGATGCCAAGACTGACGTGAAGATGGTGCAGTTGAGATTGGAAACACTGGATTGTAGCATAACTGGGCTTGAGGCTGGTTTGGAAAGACTGTTCAGATGCCTATTACAACATAGAGTGTCTCTACTCAATCTCCTAACACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

282

Amino Acids

31.62

Weight (kDa)

9.05

Isoelectric Point (pI)

53.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 45 - 278 1.2e-70 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35660
fragaria_vesca FvH4_1g10680
malus_domestica MD02G1120700.v1.1 MD15G1234600.v1.1
prunus_persica Prupe.7G178300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0097851
rosa_laevigata RLG00000016740
rosa_multiflora Rmu_sc0000974.1_g000028 Rmu_sc0008442.1_g000011
rosa_roxburghii Rroxscaffold_2G00144530
rosa_rugosa Rorug02G0068600
rosa_samantha Rh2AG115300 Rh2BG118200 Rh2CG119800 Rh2DG119500
rosa_wichuraiana Rw2G009010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 480
AciI CCGC 1 cut(s) 330
AcsI RAATTY 2 cut(s) 346, 449
AcuI CTGAAG 1 cut(s) 629
AfaI GTAC 1 cut(s) 492
AgsI TTSAA 6 cut(s) 102, 157, 179, 317, 326, 433
AhlI ACTAGT 1 cut(s) 226
AjiI CACGTC 1 cut(s) 721
AleI CACNNNNGTG 1 cut(s) 702
AloI GAACNNNNNNTCC 2 cut(s) 779, 811
AluBI AGCT 4 cut(s) 27, 82, 151, 200
AluI AGCT 4 cut(s) 27, 82, 151, 200
Alw26I GTCTC 4 cut(s) 123, 279, 425, 828
AoxI GGCC 1 cut(s) 630
ApoI RAATTY 2 cut(s) 346, 449
Asp700I GAANNNNTTC 1 cut(s) 174
BccI CCATC 3 cut(s) 433, 582, 721
BceAI ACGGC 1 cut(s) 645
BclI TGATCA 1 cut(s) 501
BcoDI GTCTC 4 cut(s) 123, 279, 425, 828
BcuI ACTAGT 1 cut(s) 226
BfaI CTAG 6 cut(s) 36, 110, 143, 227, 263, 585
BglI GCCNNNNNGGC 1 cut(s) 37
BmgBI CACGTC 1 cut(s) 721
BmrI ACTGGG 1 cut(s) 777
BmsI GCATC 3 cut(s) 608, 697, 791
BmuI ACTGGG 1 cut(s) 777
BplI GAGNNNNNCTC 2 cut(s) 276, 308
Bpu10I CCTNAGC 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 794
BsaAI YACGTR 1 cut(s) 338
BsaJI CCNNGG 1 cut(s) 633
BsaXI ACNNNNNCTCC 2 cut(s) 819, 849
Bse1I ACTGG 5 cut(s) 11, 177, 575, 756, 772
Bse3DI GCAATG 2 cut(s) 221, 283
BseDI CCNNGG 1 cut(s) 633
BseGI GGATG 1 cut(s) 481
BseMI GCAATG 2 cut(s) 221, 283
BseMII CTCAG 1 cut(s) 436
BseNI ACTGG 5 cut(s) 11, 177, 575, 756, 772
BsgI GTGCAG 1 cut(s) 752
BshFI GGCC 1 cut(s) 632
BsmAI GTCTC 4 cut(s) 123, 279, 425, 828
BsnI GGCC 1 cut(s) 632
Bsp143I GATC 2 cut(s) 60, 501
BspACI CCGC 1 cut(s) 330
BspANI GGCC 1 cut(s) 632
BspCNI CTCAG 1 cut(s) 435
BsrDI GCAATG 2 cut(s) 221, 283
BsrI ACTGG 5 cut(s) 11, 177, 575, 756, 772
BssECI CCNNGG 1 cut(s) 633
BssMI GATC 2 cut(s) 60, 501
Bst4CI ACNGT 2 cut(s) 673, 795
Bst6I CTCTTC 1 cut(s) 692
BstBAI YACGTR 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 29
BstDEI CTNAG 3 cut(s) 83, 203, 422
BstF5I GGATG 1 cut(s) 481
BstKTI GATC 2 cut(s) 63, 504
BstMAI GTCTC 4 cut(s) 123, 279, 425, 828
BstMBI GATC 2 cut(s) 60, 501
BstMWI GCNNNNNNNGC 2 cut(s) 37, 360
BstSNI TACGTA 1 cut(s) 338
BsuRI GGCC 1 cut(s) 632
BtrI CACGTC 1 cut(s) 721
BtsCI GGATG 1 cut(s) 481
BtsI GCAGTG 1 cut(s) 370
BtsIMutI CAGTG 4 cut(s) 18, 370, 582, 749
Cac8I GCNNGC 1 cut(s) 29
Csp6I GTAC 1 cut(s) 491
CviAII CATG 2 cut(s) 270, 571
CviQI GTAC 1 cut(s) 491
DdeI CTNAG 3 cut(s) 83, 203, 422
DpnI GATC 2 cut(s) 62, 503
DpnII GATC 2 cut(s) 60, 501
Eam1104I CTCTTC 1 cut(s) 692
EarI CTCTTC 1 cut(s) 692
Eco105I TACGTA 1 cut(s) 338
Eco57I CTGAAG 1 cut(s) 629
EcoRI GAATTC 1 cut(s) 346
FaeI CATG 2 cut(s) 273, 574
FaiI YATR 8 cut(s) 271, 468, 470, 542, 572, 764, 816, 847
FalI AAGNNNNNCTT 2 cut(s) 225, 257
FatI CATG 2 cut(s) 269, 570
FauNDI CATATG 1 cut(s) 468
FbaI TGATCA 1 cut(s) 501
FblI GTMKAC 1 cut(s) 480
FokI GGATG 1 cut(s) 488
FspBI CTAG 6 cut(s) 36, 110, 143, 227, 263, 585
HaeIII GGCC 1 cut(s) 632
Hin1II CATG 2 cut(s) 273, 574
HinfI GANTC 3 cut(s) 65, 116, 266
Hpy166II GTNNAC 4 cut(s) 107, 370, 481, 655
Hpy188I TCNGA 4 cut(s) 70, 425, 637, 800
Hpy188III TCNNGA 2 cut(s) 295, 317
Hpy8I GTNNAC 4 cut(s) 107, 370, 481, 655
Hpy99I CGWCG 2 cut(s) 413, 631
HpyAV CCTTC 3 cut(s) 332, 604, 643
HpyCH4III ACNGT 2 cut(s) 673, 795
HpyCH4IV ACGT 3 cut(s) 337, 408, 720
HpyCH4V TGCA 3 cut(s) 281, 466, 733
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 360
HpyF3I CTNAG 3 cut(s) 83, 203, 422
HpySE526I ACGT 3 cut(s) 337, 408, 720
Hsp92II CATG 2 cut(s) 273, 574
Ksp22I TGATCA 1 cut(s) 501
Kzo9I GATC 2 cut(s) 60, 501
LweI GCATC 3 cut(s) 608, 697, 791
MaeI CTAG 6 cut(s) 36, 110, 143, 227, 263, 585
MaeII ACGT 3 cut(s) 337, 408, 720
MaeIII GTNAC 4 cut(s) 529, 549, 577, 616
MalI GATC 2 cut(s) 62, 503
MboI GATC 2 cut(s) 60, 501
MboII GAAGA 7 cut(s) 90, 245, 415, 445, 448, 679, 736
MluCI AATT 8 cut(s) 157, 346, 428, 449, 495, 506, 518, 534
MlyI GAGTC 3 cut(s) 74, 125, 260
MmeI TCCRAC 2 cut(s) 453, 646
MnlI CCTC 6 cut(s) 9, 43, 160, 336, 643, 769
MroXI GAANNNNTTC 1 cut(s) 174
MseI TTAA 4 cut(s) 74, 125, 512, 521
MslI CAYNNNNRTG 2 cut(s) 575, 702
MwoI GCNNNNNNNGC 2 cut(s) 37, 360
NdeI CATATG 1 cut(s) 468
NdeII GATC 2 cut(s) 60, 501
NlaIII CATG 2 cut(s) 273, 574
NmuCI GTSAC 4 cut(s) 529, 549, 577, 616
OliI CACNNNNGTG 1 cut(s) 702
PdmI GAANNNNTTC 1 cut(s) 174
PleI GAGTC 3 cut(s) 73, 124, 260
PpsI GAGTC 3 cut(s) 73, 124, 260
Ppu21I YACGTR 1 cut(s) 338
RsaI GTAC 1 cut(s) 492
RsaNI GTAC 1 cut(s) 491
RseI CAYNNNNRTG 2 cut(s) 575, 702
SaqAI TTAA 4 cut(s) 74, 125, 512, 521
Sau3AI GATC 2 cut(s) 60, 501
SchI GAGTC 3 cut(s) 74, 125, 260
SfaNI GCATC 3 cut(s) 608, 697, 791
SmiMI CAYNNNNRTG 2 cut(s) 575, 702
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
SnaBI TACGTA 1 cut(s) 338
SpeI ACTAGT 1 cut(s) 226
Sse9I AATT 8 cut(s) 157, 346, 428, 449, 495, 506, 518, 534
SsiI CCGC 1 cut(s) 330
SspMI CTAG 6 cut(s) 36, 110, 143, 227, 263, 585
TaaI ACNGT 2 cut(s) 673, 795
TaiI ACGT 3 cut(s) 340, 411, 723
TaqI TCGA 2 cut(s) 63, 350
TasI AATT 8 cut(s) 157, 346, 428, 449, 495, 506, 518, 534
TatI WGTACW 1 cut(s) 490
Tru1I TTAA 4 cut(s) 74, 125, 512, 521
Tru9I TTAA 4 cut(s) 74, 125, 512, 521
TscAI CASTG 4 cut(s) 18, 370, 582, 756
TseFI GTSAC 4 cut(s) 529, 549, 577, 616
Tsp45I GTSAC 4 cut(s) 529, 549, 577, 616
TspDTI ATGAA 2 cut(s) 317, 675
TspRI CASTG 4 cut(s) 18, 370, 582, 756
XapI RAATTY 2 cut(s) 346, 449
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
XmiI GTMKAC 1 cut(s) 480
XmnI GAANNNNTTC 1 cut(s) 174
XspI CTAG 6 cut(s) 36, 110, 143, 227, 263, 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.