FvH4_1g10680

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014886
Physical Location & Seq
Forward (+)
5845262 .. 5846910
1649 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10680.t1

Sequence Viewer

Length: 873 bp
ATGCTACTGCAGGGTCTGCGTTTTGCCAACAATGTGAGGTCTATTAGCTTGCCCTCTAGGCTAAACCCCATTTCCCAAAAGATTGAGTCTGAGTTAAACAAGTTAAGGACTTGTAGATCTTCAAGTCCTCTAGGGAGTGAGTCTCTTTTAATCAATTTGTCAGGTCTAGCAGAGCTGTTCAATTCCATTGAGGAACTGGTTCAATCTCAACTGACCCAACAAGTTCTTAACCACCAGCAGTGTAAAGCACTAGTGGAAGAGACACTGGAAGGGTCAGTTTGGTTGCTAGACACATGTGGCAATGCTAGAGACTTGCTCTTGACGATGAAGCAACAGGTTCAAGACCTACAATCCGCTTTACGTAGGAAGAAGTCGAGCATTGACAGCAGTGTTCATGCTTACCTTTGCGTTAGGAAGAAGGCAAAGAAGAATGTCGCAACGAGCCTCGGAGAATTGAAGAAGATGGAGACCAGATTTGGGTGTTTATTGCATCTGTTGGATGTAGACTACAATGTACTAGTTGTGATCAAATTGTTAAGAGAATTAAGTGCTCTCACGGTTTCTATGTTTCAGTCCCTATTTGTGTCTTTATCCATGCCAGTGACTACTAGGTGGTCACTGGTATCAAAACTGAAGGCTGTAACATTTGCGACAGCCTCGGAGAAAGAGCAGAAGGTTCACAATGAAGTTGGAACAGTTGATGTTGCTCTATGCTCACTACACAAGAGTGATGCCAAGATGGATGTGAAGAAGGTGCAGTTGAAATTGGAGACACTTGGTTGTAGTATAACTGGGCTTGAAGCTGGTTTGGAAAGACTGTTCAGATGCCTACTACAACATAGAGTGTCTCTTCTTAATCTCCTTACGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

291

Amino Acids

32.31

Weight (kDa)

9.27

Isoelectric Point (pI)

49.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 52 - 286 6.7e-68 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35660
fragaria_vesca FvH4_1g10680
malus_domestica MD02G1120700.v1.1 MD15G1234600.v1.1
prunus_persica Prupe.7G178300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0097851
rosa_laevigata RLG00000016740
rosa_multiflora Rmu_sc0000974.1_g000028 Rmu_sc0008442.1_g000011
rosa_roxburghii Rroxscaffold_2G00144530
rosa_rugosa Rorug02G0068600
rosa_samantha Rh2AG115300 Rh2BG118200 Rh2CG119800 Rh2DG119500
rosa_wichuraiana Rw2G009010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 504
AciI CCGC 1 cut(s) 354
AcuI CTGAAG 1 cut(s) 653
AfaI GTAC 1 cut(s) 516
AfiI CCNNNNNNNGG 1 cut(s) 477
AflIII ACRYGT 1 cut(s) 293
AgsI TTSAA 7 cut(s) 123, 181, 203, 341, 457, 763, 800
AhlI ACTAGT 2 cut(s) 250, 517
AleI CACNNNNGTG 1 cut(s) 726
AloI GAACNNNNNNTCC 2 cut(s) 803, 835
AluBI AGCT 3 cut(s) 48, 175, 803
AluI AGCT 3 cut(s) 48, 175, 803
Alw21I GWGCWC 1 cut(s) 553
Alw26I GTCTC 6 cut(s) 147, 254, 303, 461, 764, 852
AlwNI CAGNNNCTG 1 cut(s) 16
Asp700I GAANNNNTTC 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 553
BccI CCATC 2 cut(s) 457, 733
BclI TGATCA 1 cut(s) 525
BcoDI GTCTC 6 cut(s) 147, 254, 303, 461, 764, 852
BcuI ACTAGT 2 cut(s) 250, 517
BfaI CTAG 8 cut(s) 57, 131, 167, 251, 287, 306, 518, 609
BfmI CTRYAG 1 cut(s) 8
BglI GCCNNNNNGGC 1 cut(s) 58
BglII AGATCT 1 cut(s) 116
BmrI ACTGGG 1 cut(s) 801
BmsI GCATC 3 cut(s) 499, 721, 815
BmuI ACTGGG 1 cut(s) 801
BplI GAGNNNNNCTC 4 cut(s) 127, 159, 300, 332
BsaAI YACGTR 1 cut(s) 362
BsaI GGTCTC 1 cut(s) 461
BsaJI CCNNGG 2 cut(s) 445, 657
Bsc4I CCNNNNNNNGG 1 cut(s) 477
Bse1I ACTGG 5 cut(s) 201, 270, 599, 624, 796
Bse3DI GCAATG 1 cut(s) 307
BseDI CCNNGG 2 cut(s) 445, 657
BseGI GGATG 2 cut(s) 505, 748
BseLI CCNNNNNNNGG 1 cut(s) 477
BseMI GCAATG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 5 cut(s) 201, 270, 599, 624, 796
BsgI GTGCAG 1 cut(s) 776
BsiHKAI GWGCWC 1 cut(s) 553
BslFI GGGAC 1 cut(s) 559
BslI CCNNNNNNNGG 1 cut(s) 477
BsmAI GTCTC 6 cut(s) 147, 254, 303, 461, 764, 852
BsmFI GGGAC 1 cut(s) 559
Bso31I GGTCTC 1 cut(s) 461
Bsp1286I GDGCHC 1 cut(s) 553
Bsp143I GATC 2 cut(s) 116, 525
BspACI CCGC 1 cut(s) 354
BspCNI CTCAG 1 cut(s) 82
BspMAI CTGCAG 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 461
BsrDI GCAATG 1 cut(s) 307
BsrI ACTGG 5 cut(s) 201, 270, 599, 624, 796
BssECI CCNNGG 2 cut(s) 445, 657
BssMI GATC 2 cut(s) 116, 525
Bst4CI ACNGT 3 cut(s) 559, 697, 819
Bst6I CTCTTC 2 cut(s) 252, 855
BstAPI GCANNNNNTGC 1 cut(s) 16
BstBAI YACGTR 1 cut(s) 362
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 90
BstF5I GGATG 2 cut(s) 505, 748
BstKTI GATC 2 cut(s) 119, 528
BstMAI GTCTC 6 cut(s) 147, 254, 303, 461, 764, 852
BstMBI GATC 2 cut(s) 116, 525
BstMWI GCNNNNNNNGC 3 cut(s) 16, 58, 384
BstNSI RCATGY 1 cut(s) 297
BstSFI CTRYAG 1 cut(s) 8
BstSNI TACGTA 1 cut(s) 362
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BtsCI GGATG 2 cut(s) 505, 748
BtsI GCAGTG 2 cut(s) 245, 394
BtsIMutI CAGTG 5 cut(s) 245, 263, 394, 606, 617
Cac8I GCNNGC 1 cut(s) 50
CaiI CAGNNNCTG 1 cut(s) 16
Csp6I GTAC 1 cut(s) 515
CviAII CATG 3 cut(s) 294, 395, 595
CviJI RGCY 8 cut(s) 48, 61, 175, 444, 638, 656, 796, 803
CviKI_1 RGCY 8 cut(s) 48, 61, 175, 444, 638, 656, 796, 803
CviQI GTAC 1 cut(s) 515
DdeI CTNAG 1 cut(s) 90
DpnI GATC 2 cut(s) 118, 527
DpnII GATC 2 cut(s) 116, 525
Eam1104I CTCTTC 2 cut(s) 252, 855
EarI CTCTTC 2 cut(s) 252, 855
Eco105I TACGTA 1 cut(s) 362
Eco31I GGTCTC 1 cut(s) 461
Eco57I CTGAAG 1 cut(s) 653
FaeI CATG 3 cut(s) 297, 398, 598
FaiI YATR 8 cut(s) 295, 396, 566, 596, 712, 788, 840, 871
FaqI GGGAC 1 cut(s) 559
FatI CATG 3 cut(s) 293, 394, 594
FbaI TGATCA 1 cut(s) 525
FblI GTMKAC 1 cut(s) 504
FokI GGATG 2 cut(s) 512, 755
FspBI CTAG 8 cut(s) 57, 131, 167, 251, 287, 306, 518, 609
Hin1II CATG 3 cut(s) 297, 398, 598
HinfI GANTC 2 cut(s) 86, 140
Hpy166II GTNNAC 2 cut(s) 505, 679
Hpy188I TCNGA 4 cut(s) 91, 449, 661, 824
Hpy188III TCNNGA 2 cut(s) 319, 341
Hpy8I GTNNAC 2 cut(s) 505, 679
HpyAV CCTTC 5 cut(s) 263, 412, 628, 667, 745
HpyCH4III ACNGT 3 cut(s) 559, 697, 819
HpyCH4IV ACGT 1 cut(s) 361
HpyCH4V TGCA 3 cut(s) 10, 490, 757
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 58, 384
HpyF3I CTNAG 1 cut(s) 90
HpySE526I ACGT 1 cut(s) 361
Hsp92II CATG 3 cut(s) 297, 398, 598
Ksp22I TGATCA 1 cut(s) 525
Kzo9I GATC 2 cut(s) 116, 525
LweI GCATC 3 cut(s) 499, 721, 815
MaeI CTAG 8 cut(s) 57, 131, 167, 251, 287, 306, 518, 609
MaeII ACGT 1 cut(s) 361
MaeIII GTNAC 3 cut(s) 601, 615, 640
MalI GATC 2 cut(s) 118, 527
MboI GATC 2 cut(s) 116, 525
MboII GAAGA 9 cut(s) 111, 269, 379, 427, 439, 469, 472, 760, 842
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 1 cut(s) 553
MluCI AATT 6 cut(s) 154, 181, 452, 530, 542, 764
MlyI GAGTC 2 cut(s) 95, 149
MmeI TCCRAC 2 cut(s) 477, 670
MnlI CCTC 6 cut(s) 30, 64, 138, 184, 455, 667
MroXI GAANNNNTTC 1 cut(s) 198
MseI TTAA 7 cut(s) 95, 104, 149, 228, 536, 545, 855
MslI CAYNNNNRTG 2 cut(s) 599, 726
MwoI GCNNNNNNNGC 3 cut(s) 16, 58, 384
NdeII GATC 2 cut(s) 116, 525
NlaIII CATG 3 cut(s) 297, 398, 598
NmuCI GTSAC 2 cut(s) 601, 615
NspI RCATGY 1 cut(s) 297
OliI CACNNNNGTG 1 cut(s) 726
PciI ACATGT 1 cut(s) 293
PdmI GAANNNNTTC 1 cut(s) 198
PleI GAGTC 2 cut(s) 94, 148
PpsI GAGTC 2 cut(s) 94, 148
Ppu21I YACGTR 1 cut(s) 362
PscI ACATGT 1 cut(s) 293
PstI CTGCAG 1 cut(s) 12
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 1 cut(s) 116
RsaI GTAC 1 cut(s) 516
RsaNI GTAC 1 cut(s) 515
RseI CAYNNNNRTG 2 cut(s) 599, 726
SaqAI TTAA 7 cut(s) 95, 104, 149, 228, 536, 545, 855
Sau3AI GATC 2 cut(s) 116, 525
SchI GAGTC 2 cut(s) 95, 149
SduI GDGCHC 1 cut(s) 553
SfaNI GCATC 3 cut(s) 499, 721, 815
SfcI CTRYAG 1 cut(s) 8
SmiMI CAYNNNNRTG 2 cut(s) 599, 726
SnaBI TACGTA 1 cut(s) 362
SpeI ACTAGT 2 cut(s) 250, 517
Sse9I AATT 6 cut(s) 154, 181, 452, 530, 542, 764
SsiI CCGC 1 cut(s) 354
SspMI CTAG 8 cut(s) 57, 131, 167, 251, 287, 306, 518, 609
TaaI ACNGT 3 cut(s) 559, 697, 819
TaiI ACGT 1 cut(s) 364
TaqI TCGA 1 cut(s) 374
TasI AATT 6 cut(s) 154, 181, 452, 530, 542, 764
TatI WGTACW 1 cut(s) 514
Tru1I TTAA 7 cut(s) 95, 104, 149, 228, 536, 545, 855
Tru9I TTAA 7 cut(s) 95, 104, 149, 228, 536, 545, 855
TscAI CASTG 5 cut(s) 245, 270, 394, 606, 624
TseFI GTSAC 2 cut(s) 601, 615
Tsp45I GTSAC 2 cut(s) 601, 615
TspDTI ATGAA 3 cut(s) 341, 383, 699
TspRI CASTG 5 cut(s) 245, 270, 394, 606, 624
XceI RCATGY 1 cut(s) 297
XcmI CCANNNNNNNNNTGG 1 cut(s) 193
XmiI GTMKAC 1 cut(s) 504
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 8 cut(s) 57, 131, 167, 251, 287, 306, 518, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.