Prupe.7G178300_v2.0.a1

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0014886
Physical Location & Seq
Reverse (-)
17584432 .. 17585912
1481 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G178300.1

Sequence Viewer

Length: 939 bp
ATGGCTGTTTCACTTTCATCCATAGTACCTGTGAGGTCCATTAGCTTACCATCTAGGCTAAATCCCAATTCTCAAAAGATTGAGTCAGAGCTCAAGAAGTTAAAGACTTTGAGATTTTCATGTGCTGCAGAAGCAGCAAGTTCAAGTCCTCTAGGCAGTGAGGCTCTTCTAGAGGGCTTGTCTGGTCTTGCAGAGTTGTACAATTGCATTGAGGAACTTGTTCACTCTCCACTGACCCAACAAGCTCTCAACCATCACCAACAGTGCAAAACACTAGTGGAGGAAGCACTTGATGGCTCAGTTGGGTTGCTAGACTCTTGTGGCAATGCAAGAGACCTGCTTTTGACAATGAAGGAACATGTTCAGAACCTTCAATCTGCACTGCGCAGGAGGAGGACCGGAGATTCGAGCAGCATCGAAAGCAACGTTCACGCTTACATTTGCTTTCGAAAAAAGGCAAAGAAGAGCATTGCAAAGAGCCTCAGAGATTTGAAGAAAATGGAAAGCAATATCAATATTGGGTCATTTTGTCTCTTAGATTTAGACCACAATGTGCAGATAGTGCTTAAATTGTTAAGAGAATTAAGTGCTGTCACAATTTCTGTGTTTCAGTCTCTCTGTGTGTTCCTATCCATGCCTTTGACCAACAACACAAAGGCTAGCAAATGGTGTTTGGTGTCAAAGCTAATGGCTGTGAGATTTGCAGCATCAGAGAACGGCCAAAAGATTTACAATGAAGTTGGAAGTGTAGATATTGCTCTCTGCTCACTCCATGGCCACATGAAAAAGAGTGATTATGCCAAGACTGATGTGCAGGGGGTTCAGTGGAGACTAGACACACTGGATTGCAGCATAAGTGGGCTTGAGGGTGGTTTGGAAAGACTCTTCAGATGCCTATTGCAACACAGAGTGTCTCTGCTTAATCTCCTCACACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

313

Amino Acids

34.38

Weight (kDa)

8.83

Isoelectric Point (pI)

50.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35660
fragaria_vesca FvH4_1g10680
malus_domestica MD02G1120700.v1.1 MD15G1234600.v1.1
prunus_persica Prupe.7G178300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0097851
rosa_laevigata RLG00000016740
rosa_multiflora Rmu_sc0000974.1_g000028 Rmu_sc0008442.1_g000011
rosa_roxburghii Rroxscaffold_2G00144530
rosa_rugosa Rorug02G0068600
rosa_samantha Rh2AG115300 Rh2BG118200 Rh2CG119800 Rh2DG119500
rosa_wichuraiana Rw2G009010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 386
Acc36I ACCTGC 1 cut(s) 345
AclI AACGTT 1 cut(s) 426
AcoI YGGCCR 2 cut(s) 718, 775
AcuI CTGAAG 1 cut(s) 871
AdeI CACNNNGTG 2 cut(s) 553, 910
AfaI GTAC 2 cut(s) 27, 200
AflIII ACRYGT 1 cut(s) 358
AgsI TTSAA 3 cut(s) 144, 374, 493
AhlI ACTAGT 1 cut(s) 274
AluBI AGCT 4 cut(s) 45, 91, 245, 685
AluI AGCT 4 cut(s) 45, 91, 245, 685
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 5 cut(s) 327, 536, 618, 823, 918
AoxI GGCC 2 cut(s) 718, 775
ApeKI GCWGC 5 cut(s) 125, 134, 411, 704, 849
ArsI GACNNNNNNTTYG 2 cut(s) 388, 420
Asp700I GAANNNNTTC 2 cut(s) 219, 360
AspLEI GCGC 1 cut(s) 387
AspS9I GGNCC 2 cut(s) 36, 396
AsuHPI GGTGA 1 cut(s) 248
AsuII TTCGAA 1 cut(s) 448
AsuNHI GCTAGC 1 cut(s) 659
AvaII GGWCC 2 cut(s) 36, 396
BalI TGGCCA 1 cut(s) 777
BanII GRGCYC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 5 cut(s) 112, 146, 423, 716, 861
BccI CCATC 3 cut(s) 58, 261, 287
BceAI ACGGC 1 cut(s) 733
BcoDI GTCTC 5 cut(s) 327, 536, 618, 823, 918
BcuI ACTAGT 1 cut(s) 274
BfaI CTAG 7 cut(s) 54, 152, 170, 275, 311, 660, 833
BfmI CTRYAG 1 cut(s) 126
BfuAI ACCTGC 1 cut(s) 345
BisI GCNGC 5 cut(s) 126, 135, 412, 705, 850
BlsI GCNGC 5 cut(s) 127, 136, 413, 706, 851
Bme18I GGWCC 2 cut(s) 36, 396
BmgT120I GGNCC 2 cut(s) 36, 396
BmsI GCATC 3 cut(s) 423, 716, 881
BmtI GCTAGC 1 cut(s) 663
Bpu14I TTCGAA 1 cut(s) 448
BpuEI CTTGAG 2 cut(s) 77, 884
BsaI GGTCTC 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 772
BsaWI WCCGGW 1 cut(s) 398
Bse1I ACTGG 1 cut(s) 846
Bse3DI GCAATG 2 cut(s) 331, 468
BseDI CCNNGG 1 cut(s) 772
BseGI GGATG 1 cut(s) 17
BseMI GCAATG 2 cut(s) 331, 468
BseMII CTCAG 2 cut(s) 312, 496
BseNI ACTGG 1 cut(s) 846
BseRI GAGGAG 2 cut(s) 406, 917
BseXI GCAGC 5 cut(s) 112, 146, 423, 716, 861
BsgI GTGCAG 3 cut(s) 363, 575, 833
BshFI GGCC 2 cut(s) 720, 777
BsiHKAI GWGCWC 1 cut(s) 93
BsiSI CCGG 1 cut(s) 399
BsmAI GTCTC 5 cut(s) 327, 536, 618, 823, 918
BsnI GGCC 2 cut(s) 720, 777
Bso31I GGTCTC 1 cut(s) 327
Bsp119I TTCGAA 1 cut(s) 448
Bsp1286I GDGCHC 1 cut(s) 93
Bsp1407I TGTACA 1 cut(s) 198
Bsp19I CCATGG 1 cut(s) 772
BspANI GGCC 2 cut(s) 720, 777
BspCNI CTCAG 2 cut(s) 311, 495
BspMAI CTGCAG 1 cut(s) 130
BspMI ACCTGC 1 cut(s) 345
BspOI GCTAGC 1 cut(s) 663
BspQI GCTCTTC 2 cut(s) 171, 458
BspT104I TTCGAA 1 cut(s) 448
BspTNI GGTCTC 1 cut(s) 327
BsrDI GCAATG 2 cut(s) 331, 468
BsrGI TGTACA 1 cut(s) 198
BsrI ACTGG 1 cut(s) 846
BssECI CCNNGG 1 cut(s) 772
BssT1I CCWWGG 1 cut(s) 772
Bst4CI ACNGT 1 cut(s) 264
Bst6I CTCTTC 3 cut(s) 171, 458, 890
BstAPI GCANNNNNTGC 1 cut(s) 562
BstAUI TGTACA 1 cut(s) 198
BstBI TTCGAA 1 cut(s) 448
BstC8I GCNNGC 1 cut(s) 661
BstDEI CTNAG 3 cut(s) 298, 482, 535
BstDSI CCRYGG 1 cut(s) 772
BstF5I GGATG 1 cut(s) 17
BstHHI GCGC 1 cut(s) 387
BstMAI GTCTC 5 cut(s) 327, 536, 618, 823, 918
BstMWI GCNNNNNNNGC 4 cut(s) 131, 134, 420, 562
BstNSI RCATGY 1 cut(s) 362
BstSFI CTRYAG 1 cut(s) 126
BstV1I GCAGC 5 cut(s) 112, 146, 423, 716, 861
BsuRI GGCC 2 cut(s) 720, 777
BtgI CCRYGG 1 cut(s) 772
BtsCI GGATG 1 cut(s) 17
BtsI GCAGTG 2 cut(s) 163, 380
BtsIMutI CAGTG 6 cut(s) 163, 230, 269, 380, 830, 839
BveI ACCTGC 1 cut(s) 345
Cac8I GCNNGC 1 cut(s) 661
CfoI GCGC 1 cut(s) 387
Cfr13I GGNCC 2 cut(s) 36, 396
Csp6I GTAC 2 cut(s) 26, 199
CviAII CATG 5 cut(s) 120, 359, 634, 773, 781
CviQI GTAC 2 cut(s) 26, 199
DdeI CTNAG 3 cut(s) 298, 482, 535
DraIII CACNNNGTG 2 cut(s) 553, 910
EaeI YGGCCR 2 cut(s) 718, 775
Eam1104I CTCTTC 3 cut(s) 171, 458, 890
EarI CTCTTC 3 cut(s) 171, 458, 890
Ecl136II GAGCTC 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 772
Eco24I GRGCYC 1 cut(s) 93
Eco31I GGTCTC 1 cut(s) 327
Eco47I GGWCC 2 cut(s) 36, 396
Eco53kI GAGCTC 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 871
EcoICRI GAGCTC 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 772
EcoT38I GRGCYC 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 772
FaeI CATG 5 cut(s) 123, 362, 637, 776, 784
FaiI YATR 8 cut(s) 23, 121, 360, 635, 774, 782, 798, 854
FatI CATG 5 cut(s) 119, 358, 633, 772, 780
Fnu4HI GCNGC 5 cut(s) 126, 135, 412, 705, 850
FokI GGATG 1 cut(s) 4
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 5 cut(s) 126, 135, 412, 705, 850
FspBI CTAG 7 cut(s) 54, 152, 170, 275, 311, 660, 833
FspI TGCGCA 1 cut(s) 386
GlaI GCGC 1 cut(s) 386
GluI GCNGC 5 cut(s) 126, 135, 412, 705, 850
HaeIII GGCC 2 cut(s) 720, 777
HapII CCGG 1 cut(s) 399
HhaI GCGC 1 cut(s) 387
Hin1II CATG 5 cut(s) 123, 362, 637, 776, 784
Hin6I GCGC 1 cut(s) 385
HinP1I GCGC 1 cut(s) 385
HinfI GANTC 4 cut(s) 83, 314, 404, 882
HpaII CCGG 1 cut(s) 399
HphI GGTGA 1 cut(s) 248
Hpy166II GTNNAC 2 cut(s) 223, 430
Hpy188I TCNGA 5 cut(s) 88, 366, 485, 712, 890
Hpy188III TCNNGA 2 cut(s) 94, 170
Hpy8I GTNNAC 2 cut(s) 223, 430
HpyAV CCTTC 2 cut(s) 346, 380
HpyCH4III ACNGT 1 cut(s) 264
HpyCH4IV ACGT 1 cut(s) 426
HpyF10VI GCNNNNNNNGC 4 cut(s) 131, 134, 420, 562
HpyF3I CTNAG 3 cut(s) 298, 482, 535
HpySE526I ACGT 1 cut(s) 426
Hsp92II CATG 5 cut(s) 123, 362, 637, 776, 784
HspAI GCGC 1 cut(s) 385
LguI GCTCTTC 2 cut(s) 171, 458
LpnPI CCDG 7 cut(s) 42, 168, 350, 373, 412, 800, 827
Lsp1109I GCAGC 5 cut(s) 112, 146, 423, 716, 861
LweI GCATC 3 cut(s) 423, 716, 881
MaeI CTAG 7 cut(s) 54, 152, 170, 275, 311, 660, 833
MaeII ACGT 1 cut(s) 426
MaeIII GTNAC 1 cut(s) 592
MboII GAAGA 4 cut(s) 158, 475, 505, 877
MfeI CAATTG 1 cut(s) 202
MhlI GDGCHC 1 cut(s) 93
MlsI TGGCCA 1 cut(s) 777
MluCI AATT 5 cut(s) 67, 202, 569, 581, 597
MluNI TGGCCA 1 cut(s) 777
MlyI GAGTC 3 cut(s) 92, 308, 876
MmeI TCCRAC 1 cut(s) 721
Mox20I TGGCCA 1 cut(s) 777
MroXI GAANNNNTTC 2 cut(s) 219, 360
MscI TGGCCA 1 cut(s) 777
MseI TTAA 5 cut(s) 101, 567, 575, 584, 921
Msp20I TGGCCA 1 cut(s) 777
MspI CCGG 1 cut(s) 399
MunI CAATTG 1 cut(s) 202
MwoI GCNNNNNNNGC 4 cut(s) 131, 134, 420, 562
NcoI CCATGG 1 cut(s) 772
NheI GCTAGC 1 cut(s) 659
NlaIII CATG 5 cut(s) 123, 362, 637, 776, 784
NmuCI GTSAC 1 cut(s) 592
NsbI TGCGCA 1 cut(s) 386
NspI RCATGY 1 cut(s) 362
NspV TTCGAA 1 cut(s) 448
PciI ACATGT 1 cut(s) 358
PciSI GCTCTTC 2 cut(s) 171, 458
PcsI WCGNNNNNNNCGW 1 cut(s) 423
PdmI GAANNNNTTC 2 cut(s) 219, 360
PfeI GAWTC 1 cut(s) 404
PkrI GCNGC 5 cut(s) 127, 136, 413, 706, 851
PleI GAGTC 3 cut(s) 91, 308, 876
PpsI GAGTC 3 cut(s) 91, 308, 876
PscI ACATGT 1 cut(s) 358
Psp124BI GAGCTC 1 cut(s) 93
Psp1406I AACGTT 1 cut(s) 426
PspPI GGNCC 2 cut(s) 36, 396
PstI CTGCAG 1 cut(s) 130
RsaI GTAC 2 cut(s) 27, 200
RsaNI GTAC 2 cut(s) 26, 199
SacI GAGCTC 1 cut(s) 93
SapI GCTCTTC 2 cut(s) 171, 458
SaqAI TTAA 5 cut(s) 101, 567, 575, 584, 921
SatI GCNGC 5 cut(s) 126, 135, 412, 705, 850
Sau96I GGNCC 2 cut(s) 36, 396
SchI GAGTC 3 cut(s) 92, 308, 876
SduI GDGCHC 1 cut(s) 93
SfaNI GCATC 3 cut(s) 423, 716, 881
SfcI CTRYAG 1 cut(s) 126
SfuI TTCGAA 1 cut(s) 448
SinI GGWCC 2 cut(s) 36, 396
SmlI CTYRAG 2 cut(s) 92, 863
SmoI CTYRAG 2 cut(s) 92, 863
SpeI ACTAGT 1 cut(s) 274
Sse9I AATT 5 cut(s) 67, 202, 569, 581, 597
SspI AATATT 1 cut(s) 517
SspMI CTAG 7 cut(s) 54, 152, 170, 275, 311, 660, 833
SstI GAGCTC 1 cut(s) 93
StyI CCWWGG 1 cut(s) 772
TaaI ACNGT 1 cut(s) 264
TaiI ACGT 1 cut(s) 429
TaqI TCGA 3 cut(s) 407, 417, 448
TasI AATT 5 cut(s) 67, 202, 569, 581, 597
TatI WGTACW 1 cut(s) 198
TfiI GAWTC 1 cut(s) 404
Tru1I TTAA 5 cut(s) 101, 567, 575, 584, 921
Tru9I TTAA 5 cut(s) 101, 567, 575, 584, 921
TscAI CASTG 6 cut(s) 163, 237, 269, 387, 830, 846
TseFI GTSAC 1 cut(s) 592
TseI GCWGC 5 cut(s) 125, 134, 411, 704, 849
Tsp45I GTSAC 1 cut(s) 592
TspDTI ATGAA 5 cut(s) 6, 108, 365, 750, 797
TspRI CASTG 6 cut(s) 163, 237, 269, 387, 830, 846
VpaK11BI GGWCC 2 cut(s) 36, 396
XbaI TCTAGA 1 cut(s) 169
XceI RCATGY 1 cut(s) 362
XmnI GAANNNNTTC 2 cut(s) 219, 360
XspI CTAG 7 cut(s) 54, 152, 170, 275, 311, 660, 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.