Rroxscaffold_2G00144530

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014886
Physical Location & Seq
Reverse (-)
82424703 .. 82427147
2445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00144530.1

Sequence Viewer

Length: 1134 bp
ATGCACAAAGAGCCATTGTCGCATTCTCTAGATGGTAGTGATGGAGCCAACCAAACCAGCAATGTTAGGGTTTCGAGTAAGCAATTTCCCCACCATATAGTGGTGGTTATCCCGCAAGGCAGCCGCACCAGCCGCTCCGGGATCGATATGCGCCTCGTCGACAAGGCAAAGGCTGCAACCAAGATGGAGGATGAATCCGCCATGGAAGAAGGTAAGAATTGTCCAAGACGGCCGTCTATGATAAACCCTAGCAGAGAGAGTACTAGACCTTTTCAAACCATAATGGTTCAACCAGTGAGGTCTATTAGCTTGCCCTCTAGGCTAAACCCCATTTCCCAAAAGATTGAGTCAGAGTTAAACAGGCTAAGGACCTGTAAATCTTCAAGTCCTCTAGGGAGTGAGTCTCTTTTAATCAGTTTGTCAGGTCTAGCAGAGCTGTTCAATTCCATTGAGGAACTGGTTCAATCTCAACTGACCCAACAAGCTCTTAGCCACCAGCAATGTAAACCACTAGTGGAAGAAACACTTGACGGGTCAGTTTGGTTGCTAGACTCATGTGGCAATGCAAGAGACTTGCTCTTGACGATGAAGCAACAGGTTCAAGATCTTCAATCCGCTTTACGTAGGAGGAATTCGAGCATTGATAGCAGTGTTCACGCTTACCTTTGCTTTAGAAAAAAGGCAAAGAAGAACGTCGCAAATAGCCTCAGAGACTTGAAGAAGATGGAGAGCAAATTTGGGTGTTTTTTGCATATGTTGGATGTAGACAACAATGTACTAATTGTGATCAAATTGTTAAGAGAATTAAGTACTGTCACAATTTCTATGTTTCAGTCCCTATTTGTGTTTCTATCCATGCCAGTGACTACTAGATGGTCATTGGTATCAAAACTGAAGGCTGTGACATTTGCGACTGCCTCGGAGAAAGACCAGAAGATTTACAATGAAGTTGGAACTGTTGATGTTGCTATCTGCTCACTACACAAGAGTGATGCCAAGACTGACGTGAAGATGGTGCAGTTGAGATTGGAAACACTAAATTGTAGCATAACTGGGCTTGAGGCTGGTTTGGAAAGACTGTTCAGATGCCTATTACAACATAGAGTGTCTCTACTCAATCTCGTAACACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

377

Amino Acids

42.12

Weight (kDa)

9.26

Isoelectric Point (pI)

56.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 140 - 373 1.1e-71 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35660
fragaria_vesca FvH4_1g10680
malus_domestica MD02G1120700.v1.1 MD15G1234600.v1.1
prunus_persica Prupe.7G178300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0097851
rosa_laevigata RLG00000016740
rosa_multiflora Rmu_sc0000974.1_g000028 Rmu_sc0008442.1_g000011
rosa_roxburghii Rroxscaffold_2G00144530
rosa_rugosa Rorug02G0068600
rosa_samantha Rh2AG115300 Rh2BG118200 Rh2CG119800 Rh2DG119500
rosa_wichuraiana Rw2G009010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 100
AccBSI CCGCTC 1 cut(s) 135
AccI GTMKAC 2 cut(s) 159, 765
AciI CCGC 5 cut(s) 113, 124, 133, 198, 615
AclWI GGATC 1 cut(s) 149
AcoI YGGCCR 1 cut(s) 230
AcsI RAATTY 2 cut(s) 631, 734
AcuI CTGAAG 1 cut(s) 914
AfaI GTAC 3 cut(s) 262, 777, 811
AfiI CCNNNNNNNGG 1 cut(s) 100
AgsI TTSAA 8 cut(s) 275, 290, 384, 442, 464, 602, 611, 718
AhlI ACTAGT 1 cut(s) 511
AjiI CACGTC 1 cut(s) 1006
AleI CACNNNNGTG 1 cut(s) 987
AloI GAACNNNNNNTCC 2 cut(s) 1064, 1096
AluBI AGCT 3 cut(s) 309, 436, 485
AluI AGCT 3 cut(s) 309, 436, 485
Alw26I GTCTC 4 cut(s) 408, 564, 705, 1113
AlwI GGATC 1 cut(s) 149
AoxI GGCC 1 cut(s) 230
ApeKI GCWGC 2 cut(s) 120, 173
ApoI RAATTY 2 cut(s) 631, 734
Asp700I GAANNNNTTC 1 cut(s) 459
AspLEI GCGC 1 cut(s) 153
AspS9I GGNCC 1 cut(s) 369
AsuC2I CCSGG 1 cut(s) 139
AvaII GGWCC 1 cut(s) 369
BbvI GCAGC 2 cut(s) 132, 160
BccI CCATC 6 cut(s) 26, 35, 178, 718, 867, 1006
BceAI ACGGC 2 cut(s) 217, 245
BclI TGATCA 1 cut(s) 786
BcnI CCSGG 1 cut(s) 139
BcoDI GTCTC 4 cut(s) 408, 564, 705, 1113
BcuI ACTAGT 1 cut(s) 511
BfaI CTAG 9 cut(s) 29, 249, 264, 318, 392, 428, 512, 548, 870
BglI GCCNNNNNGGC 1 cut(s) 319
BglII AGATCT 1 cut(s) 604
BisI GCNGC 4 cut(s) 121, 124, 133, 174
BlsI GCNGC 4 cut(s) 122, 125, 134, 175
BmcAI AGTACT 2 cut(s) 262, 811
Bme1390I CCNGG 1 cut(s) 139
Bme18I GGWCC 1 cut(s) 369
BmgBI CACGTC 1 cut(s) 1006
BmgT120I GGNCC 1 cut(s) 369
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 1 cut(s) 139
BmrI ACTGGG 1 cut(s) 1062
BmsI GCATC 2 cut(s) 982, 1076
BmuI ACTGGG 1 cut(s) 1062
BoxI GACNNNNGTC 1 cut(s) 232
BplI GAGNNNNNCTC 4 cut(s) 388, 420, 561, 593
Bpu10I CCTNAGC 1 cut(s) 365
BpuEI CTTGAG 1 cut(s) 1079
BpuMI CCSGG 1 cut(s) 139
Bsa29I ATCGAT 1 cut(s) 144
BsaAI YACGTR 1 cut(s) 623
BsaJI CCNNGG 2 cut(s) 201, 918
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse1I ACTGG 4 cut(s) 293, 462, 860, 1057
Bse3DI GCAATG 3 cut(s) 67, 506, 568
BseCI ATCGAT 1 cut(s) 144
BseDI CCNNGG 2 cut(s) 201, 918
BseGI GGATG 2 cut(s) 196, 766
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMI GCAATG 3 cut(s) 67, 506, 568
BseMII CTCAG 1 cut(s) 721
BseNI ACTGG 4 cut(s) 293, 462, 860, 1057
BseX3I CGGCCG 1 cut(s) 230
BseXI GCAGC 2 cut(s) 132, 160
BsgI GTGCAG 1 cut(s) 1037
Bsh1285I CGRYCG 1 cut(s) 233
BshFI GGCC 1 cut(s) 232
BshVI ATCGAT 1 cut(s) 144
BsiEI CGRYCG 1 cut(s) 233
BsiSI CCGG 1 cut(s) 138
BslFI GGGAC 1 cut(s) 820
BslI CCNNNNNNNGG 1 cut(s) 100
BsmAI GTCTC 4 cut(s) 408, 564, 705, 1113
BsmFI GGGAC 1 cut(s) 820
BsmI GAATGC 1 cut(s) 22
BsnI GGCC 1 cut(s) 232
Bsp143I GATC 3 cut(s) 141, 604, 786
Bsp19I CCATGG 1 cut(s) 201
BspACI CCGC 5 cut(s) 113, 124, 133, 198, 615
BspANI GGCC 1 cut(s) 232
BspCNI CTCAG 1 cut(s) 720
BspDI ATCGAT 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 46
BspPI GGATC 1 cut(s) 149
BsrBI CCGCTC 1 cut(s) 135
BsrDI GCAATG 3 cut(s) 67, 506, 568
BsrI ACTGG 4 cut(s) 293, 462, 860, 1057
BssECI CCNNGG 2 cut(s) 201, 918
BssMI GATC 3 cut(s) 141, 604, 786
BssT1I CCWWGG 1 cut(s) 201
Bst4CI ACNGT 3 cut(s) 814, 958, 1080
BstAPI GCANNNNNTGC 1 cut(s) 173
BstBAI YACGTR 1 cut(s) 623
BstC8I GCNNGC 1 cut(s) 311
BstDEI CTNAG 3 cut(s) 365, 488, 707
BstDSI CCRYGG 1 cut(s) 201
BstF5I GGATG 2 cut(s) 196, 766
BstHHI GCGC 1 cut(s) 153
BstKTI GATC 3 cut(s) 144, 607, 789
BstMAI GTCTC 4 cut(s) 408, 564, 705, 1113
BstMBI GATC 3 cut(s) 141, 604, 786
BstMCI CGRYCG 1 cut(s) 233
BstMWI GCNNNNNNNGC 7 cut(s) 10, 19, 129, 132, 173, 319, 645
BstPAI GACNNNNGTC 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 137
BstSNI TACGTA 1 cut(s) 623
BstV1I GCAGC 2 cut(s) 132, 160
BstX2I RGATCY 1 cut(s) 604
BstYI RGATCY 1 cut(s) 604
BstZI CGGCCG 1 cut(s) 230
Bsu15I ATCGAT 1 cut(s) 144
BsuRI GGCC 1 cut(s) 232
BsuTUI ATCGAT 1 cut(s) 144
BtgI CCRYGG 1 cut(s) 201
BtrI CACGTC 1 cut(s) 1006
BtsCI GGATG 2 cut(s) 196, 766
BtsI GCAGTG 1 cut(s) 655
BtsIMutI CAGTG 3 cut(s) 300, 655, 867
Cac8I GCNNGC 1 cut(s) 311
CfoI GCGC 1 cut(s) 153
Cfr13I GGNCC 1 cut(s) 369
ClaI ATCGAT 1 cut(s) 144
Csp6I GTAC 3 cut(s) 261, 776, 810
CviAII CATG 3 cut(s) 202, 555, 856
CviQI GTAC 3 cut(s) 261, 776, 810
DdeI CTNAG 3 cut(s) 365, 488, 707
DpnI GATC 3 cut(s) 143, 606, 788
DpnII GATC 3 cut(s) 141, 604, 786
EaeI YGGCCR 1 cut(s) 230
EagI CGGCCG 1 cut(s) 230
EciI GGCGGA 1 cut(s) 187
EclXI CGGCCG 1 cut(s) 230
Eco105I TACGTA 1 cut(s) 623
Eco130I CCWWGG 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 369
Eco52I CGGCCG 1 cut(s) 230
Eco57I CTGAAG 1 cut(s) 914
EcoO109I RGGNCCY 1 cut(s) 369
EcoRI GAATTC 1 cut(s) 631
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 3 cut(s) 205, 558, 859
FalI AAGNNNNNCTT 2 cut(s) 510, 542
FaqI GGGAC 1 cut(s) 820
FatI CATG 3 cut(s) 201, 554, 855
FauI CCCGC 1 cut(s) 120
FauNDI CATATG 1 cut(s) 753
FbaI TGATCA 1 cut(s) 786
FblI GTMKAC 2 cut(s) 159, 765
Fnu4HI GCNGC 4 cut(s) 121, 124, 133, 174
FokI GGATG 2 cut(s) 203, 773
Fsp4HI GCNGC 4 cut(s) 121, 124, 133, 174
FspBI CTAG 9 cut(s) 29, 249, 264, 318, 392, 428, 512, 548, 870
GlaI GCGC 1 cut(s) 152
GluI GCNGC 4 cut(s) 121, 124, 133, 174
HaeIII GGCC 1 cut(s) 232
HapII CCGG 1 cut(s) 138
HhaI GCGC 1 cut(s) 153
Hin1II CATG 3 cut(s) 205, 558, 859
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 4 cut(s) 194, 347, 401, 551
HpaII CCGG 1 cut(s) 138
Hpy166II GTNNAC 4 cut(s) 160, 506, 655, 766
Hpy188I TCNGA 4 cut(s) 352, 710, 922, 1085
Hpy188III TCNNGA 3 cut(s) 29, 580, 602
Hpy8I GTNNAC 4 cut(s) 160, 506, 655, 766
Hpy99I CGWCG 2 cut(s) 161, 698
HpyAV CCTTC 2 cut(s) 203, 889
HpyCH4III ACNGT 3 cut(s) 814, 958, 1080
HpyCH4IV ACGT 3 cut(s) 622, 693, 1005
HpyCH4V TGCA 5 cut(s) 4, 176, 566, 751, 1018
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 19, 129, 132, 173, 319, 645
HpyF3I CTNAG 3 cut(s) 365, 488, 707
HpySE526I ACGT 3 cut(s) 622, 693, 1005
Hsp92II CATG 3 cut(s) 205, 558, 859
HspAI GCGC 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 786
Kzo9I GATC 3 cut(s) 141, 604, 786
LmnI GCTCC 2 cut(s) 44, 140
Lsp1109I GCAGC 2 cut(s) 132, 160
LweI GCATC 2 cut(s) 982, 1076
MaeI CTAG 9 cut(s) 29, 249, 264, 318, 392, 428, 512, 548, 870
MaeII ACGT 3 cut(s) 622, 693, 1005
MaeIII GTNAC 4 cut(s) 814, 862, 901, 1123
MalI GATC 3 cut(s) 143, 606, 788
MbiI CCGCTC 1 cut(s) 135
MboI GATC 3 cut(s) 141, 604, 786
MboII GAAGA 9 cut(s) 218, 372, 530, 599, 700, 730, 733, 946, 1021
MflI RGATCY 1 cut(s) 604
MlyI GAGTC 3 cut(s) 356, 410, 545
MmeI TCCRAC 2 cut(s) 738, 931
MroXI GAANNNNTTC 1 cut(s) 459
MseI TTAA 4 cut(s) 356, 410, 797, 806
MslI CAYNNNNRTG 2 cut(s) 860, 987
MspI CCGG 1 cut(s) 138
MspR9I CCNGG 1 cut(s) 139
Mva1269I GAATGC 1 cut(s) 22
MwoI GCNNNNNNNGC 7 cut(s) 10, 19, 129, 132, 173, 319, 645
NciI CCSGG 1 cut(s) 139
NcoI CCATGG 1 cut(s) 201
NdeI CATATG 1 cut(s) 753
NdeII GATC 3 cut(s) 141, 604, 786
NlaIII CATG 3 cut(s) 205, 558, 859
NlaIV GGNNCC 1 cut(s) 46
NmuCI GTSAC 3 cut(s) 814, 862, 901
OliI CACNNNNGTG 1 cut(s) 987
PctI GAATGC 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 459
PfeI GAWTC 1 cut(s) 194
PflMI CCANNNNNTGG 1 cut(s) 100
PfoI TCCNGGA 1 cut(s) 137
PkrI GCNGC 4 cut(s) 122, 125, 134, 175
PleI GAGTC 3 cut(s) 355, 409, 545
PpsI GAGTC 3 cut(s) 355, 409, 545
Ppu21I YACGTR 1 cut(s) 623
PpuMI RGGWCCY 1 cut(s) 369
PshAI GACNNNNGTC 1 cut(s) 232
Psp5II RGGWCCY 1 cut(s) 369
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 1 cut(s) 369
PspPPI RGGWCCY 1 cut(s) 369
PsuI RGATCY 1 cut(s) 604
RsaI GTAC 3 cut(s) 262, 777, 811
RsaNI GTAC 3 cut(s) 261, 776, 810
RseI CAYNNNNRTG 2 cut(s) 860, 987
SalI GTCGAC 1 cut(s) 158
SaqAI TTAA 4 cut(s) 356, 410, 797, 806
SatI GCNGC 4 cut(s) 121, 124, 133, 174
Sau3AI GATC 3 cut(s) 141, 604, 786
Sau96I GGNCC 1 cut(s) 369
ScaI AGTACT 2 cut(s) 262, 811
SchI GAGTC 3 cut(s) 356, 410, 545
ScrFI CCNGG 1 cut(s) 139
SfaNI GCATC 2 cut(s) 982, 1076
SinI GGWCC 1 cut(s) 369
SmiMI CAYNNNNRTG 2 cut(s) 860, 987
SmlI CTYRAG 1 cut(s) 1058
SmoI CTYRAG 1 cut(s) 1058
SnaBI TACGTA 1 cut(s) 623
SpeI ACTAGT 1 cut(s) 511
SsiI CCGC 5 cut(s) 113, 124, 133, 198, 615
SspMI CTAG 9 cut(s) 29, 249, 264, 318, 392, 428, 512, 548, 870
StyD4I CCNGG 1 cut(s) 137
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 3 cut(s) 814, 958, 1080
TaiI ACGT 3 cut(s) 625, 696, 1008
TaqI TCGA 4 cut(s) 74, 144, 159, 635
TatI WGTACW 3 cut(s) 260, 775, 809
TauI GCSGC 2 cut(s) 126, 135
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 4 cut(s) 356, 410, 797, 806
Tru9I TTAA 4 cut(s) 356, 410, 797, 806
TscAI CASTG 3 cut(s) 300, 655, 867
TseFI GTSAC 3 cut(s) 814, 862, 901
TseI GCWGC 2 cut(s) 120, 173
Tsp45I GTSAC 3 cut(s) 814, 862, 901
TspDTI ATGAA 3 cut(s) 207, 602, 960
TspRI CASTG 3 cut(s) 300, 655, 867
Van91I CCANNNNNTGG 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 369
XapI RAATTY 2 cut(s) 631, 734
XbaI TCTAGA 1 cut(s) 28
XcmI CCANNNNNNNNNTGG 1 cut(s) 454
XmiI GTMKAC 2 cut(s) 159, 765
XmnI GAANNNNTTC 1 cut(s) 459
XspI CTAG 9 cut(s) 29, 249, 264, 318, 392, 428, 512, 548, 870
ZrmI AGTACT 2 cut(s) 262, 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.