Rh2CG119800

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0014886
Physical Location & Seq
Forward (+)
10600967 .. 10601818
852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG119800.1

Sequence Viewer

Length: 852 bp
ATGGCTCAACCAGTGAGGTCTATTAGCTTGCCCTCTAGGCTAAACCCCATTTCCCAAAAGATCGAGTCAGAGTTAAACAAGCTAAGGACTTGTAAATCTTCAAGTCCTCTAGGGAGTGAGTCTCTTTTAATCAGTTTGTCAGGTTTAGCAGAGCTGTTCAATTCCATTGAGGAACTGGTTCAATCTCAACTGACCCAACAAGCTCTTAGCCACCAGCAATGTAAATCACTAGTGGAAGAAACACTTGACGGGTCAGTTTGGTTGCTAGACTCATGTGGCAATGCAAGAGACTTGCTCTTGACGATGAAGCAACAGGTTCAAGACCTTCAATCCGCTTTACGTAGGAGGAATTCGAGCATTGATAGCAGTGTTCACGCTTACCTTTGCTTTAGAAAAAAGGCAAAGAAGAACGTCGCAAATAGTCTCAGAGAATTGAAGAAGATGGAGAGCAAATTTGGGTGTTTTTTGCATATGTTGGATGTAGACTACAATGTACTAATTGTGATCAAATTGTTAAGAGAATTAAGTGCTGTCTCAATTTCTATGTTTCAGTCCCTATTTGTATTTCTATCCATGCCAGTGACTACTAGATGGTCATTGGTATCAAAACTGAAGGCCGTGACATTTGCGACGGCCTCGGAGAAAGACCAGAAGGTTTACAATGAAGTTGGAACTGTTGATGTTGCTCTCTGCTCACTACACAAGAGTGATGCCAAGACTGACGTGAAGATGGTGCAGTTGAGATTGGAAACACTGGATTGTAGCATAACTGGGCTTGAGGCTGGTTTGGAAAGACTGTTCAGACGCCTATTACAACATAGAGTGTCTCTACTCAATCTCCTAACACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

283

Amino Acids

31.73

Weight (kDa)

9.15

Isoelectric Point (pI)

55.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 46 - 279 2e-71 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35660
fragaria_vesca FvH4_1g10680
malus_domestica MD02G1120700.v1.1 MD15G1234600.v1.1
prunus_persica Prupe.7G178300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0097851
rosa_laevigata RLG00000016740
rosa_multiflora Rmu_sc0000974.1_g000028 Rmu_sc0008442.1_g000011
rosa_roxburghii Rroxscaffold_2G00144530
rosa_rugosa Rorug02G0068600
rosa_samantha Rh2AG115300 Rh2BG118200 Rh2CG119800 Rh2DG119500
rosa_wichuraiana Rw2G009010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 483
AciI CCGC 1 cut(s) 333
AcsI RAATTY 2 cut(s) 349, 452
AcuI CTGAAG 1 cut(s) 632
AcyI GRCGYC 1 cut(s) 805
AfaI GTAC 1 cut(s) 495
AgsI TTSAA 6 cut(s) 102, 160, 182, 320, 329, 436
AhlI ACTAGT 1 cut(s) 229
AjiI CACGTC 1 cut(s) 724
AleI CACNNNNGTG 1 cut(s) 705
AloI GAACNNNNNNTCC 2 cut(s) 782, 814
AluBI AGCT 4 cut(s) 27, 82, 154, 203
AluI AGCT 4 cut(s) 27, 82, 154, 203
Alw26I GTCTC 5 cut(s) 126, 282, 428, 538, 831
AoxI GGCC 2 cut(s) 615, 633
ApoI RAATTY 2 cut(s) 349, 452
Asp700I GAANNNNTTC 1 cut(s) 177
BccI CCATC 3 cut(s) 436, 585, 724
BceAI ACGGC 2 cut(s) 602, 648
BclI TGATCA 1 cut(s) 504
BcoDI GTCTC 5 cut(s) 126, 282, 428, 538, 831
BcuI ACTAGT 1 cut(s) 229
BfaI CTAG 5 cut(s) 36, 110, 230, 266, 588
BglI GCCNNNNNGGC 1 cut(s) 37
BmgBI CACGTC 1 cut(s) 724
BmrI ACTGGG 1 cut(s) 780
BmsI GCATC 1 cut(s) 700
BmuI ACTGGG 1 cut(s) 780
BplI GAGNNNNNCTC 4 cut(s) 106, 138, 279, 311
Bpu10I CCTNAGC 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 797
BsaAI YACGTR 1 cut(s) 341
BsaHI GRCGYC 1 cut(s) 805
BsaJI CCNNGG 1 cut(s) 636
BsaXI ACNNNNNCTCC 2 cut(s) 822, 852
Bse1I ACTGG 5 cut(s) 11, 180, 578, 759, 775
Bse3DI GCAATG 2 cut(s) 224, 286
BseDI CCNNGG 1 cut(s) 636
BseGI GGATG 1 cut(s) 484
BseMI GCAATG 2 cut(s) 224, 286
BseMII CTCAG 1 cut(s) 439
BseNI ACTGG 5 cut(s) 11, 180, 578, 759, 775
BsgI GTGCAG 1 cut(s) 755
BshFI GGCC 2 cut(s) 617, 635
BslFI GGGAC 1 cut(s) 538
BsmAI GTCTC 5 cut(s) 126, 282, 428, 538, 831
BsmFI GGGAC 1 cut(s) 538
BsnI GGCC 2 cut(s) 617, 635
Bsp143I GATC 2 cut(s) 60, 504
BspACI CCGC 1 cut(s) 333
BspANI GGCC 2 cut(s) 617, 635
BspCNI CTCAG 1 cut(s) 438
BsrDI GCAATG 2 cut(s) 224, 286
BsrI ACTGG 5 cut(s) 11, 180, 578, 759, 775
BssECI CCNNGG 1 cut(s) 636
BssMI GATC 2 cut(s) 60, 504
BssNI GRCGYC 1 cut(s) 805
Bst4CI ACNGT 2 cut(s) 676, 798
BstACI GRCGYC 1 cut(s) 805
BstBAI YACGTR 1 cut(s) 341
BstC8I GCNNGC 1 cut(s) 29
BstDEI CTNAG 3 cut(s) 83, 206, 425
BstF5I GGATG 1 cut(s) 484
BstKTI GATC 2 cut(s) 63, 507
BstMAI GTCTC 5 cut(s) 126, 282, 428, 538, 831
BstMBI GATC 2 cut(s) 60, 504
BstMWI GCNNNNNNNGC 2 cut(s) 37, 363
BstSNI TACGTA 1 cut(s) 341
BsuRI GGCC 2 cut(s) 617, 635
BtrI CACGTC 1 cut(s) 724
BtsCI GGATG 1 cut(s) 484
BtsI GCAGTG 1 cut(s) 373
BtsIMutI CAGTG 4 cut(s) 18, 373, 585, 752
Cac8I GCNNGC 1 cut(s) 29
CseI GACGC 1 cut(s) 813
Csp6I GTAC 1 cut(s) 494
CviAII CATG 2 cut(s) 273, 574
CviQI GTAC 1 cut(s) 494
DdeI CTNAG 3 cut(s) 83, 206, 425
DpnI GATC 2 cut(s) 62, 506
DpnII GATC 2 cut(s) 60, 504
Eco105I TACGTA 1 cut(s) 341
Eco57I CTGAAG 1 cut(s) 632
EcoRI GAATTC 1 cut(s) 349
FaeI CATG 2 cut(s) 276, 577
FaiI YATR 8 cut(s) 274, 471, 473, 545, 575, 767, 819, 850
FalI AAGNNNNNCTT 2 cut(s) 228, 260
FaqI GGGAC 1 cut(s) 538
FatI CATG 2 cut(s) 272, 573
FauNDI CATATG 1 cut(s) 471
FbaI TGATCA 1 cut(s) 504
FblI GTMKAC 1 cut(s) 483
FokI GGATG 1 cut(s) 491
FspBI CTAG 5 cut(s) 36, 110, 230, 266, 588
HaeIII GGCC 2 cut(s) 617, 635
HgaI GACGC 1 cut(s) 813
Hin1I GRCGYC 1 cut(s) 805
Hin1II CATG 2 cut(s) 276, 577
HinfI GANTC 3 cut(s) 65, 119, 269
Hpy166II GTNNAC 3 cut(s) 373, 484, 658
Hpy188I TCNGA 4 cut(s) 70, 428, 640, 803
Hpy188III TCNNGA 2 cut(s) 298, 320
Hpy8I GTNNAC 3 cut(s) 373, 484, 658
Hpy99I CGWCG 2 cut(s) 416, 634
HpyAV CCTTC 3 cut(s) 335, 607, 646
HpyCH4III ACNGT 2 cut(s) 676, 798
HpyCH4IV ACGT 3 cut(s) 340, 411, 723
HpyCH4V TGCA 3 cut(s) 284, 469, 736
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 363
HpyF3I CTNAG 3 cut(s) 83, 206, 425
HpySE526I ACGT 3 cut(s) 340, 411, 723
Hsp92I GRCGYC 1 cut(s) 805
Hsp92II CATG 2 cut(s) 276, 577
Ksp22I TGATCA 1 cut(s) 504
Kzo9I GATC 2 cut(s) 60, 504
LweI GCATC 1 cut(s) 700
MaeI CTAG 5 cut(s) 36, 110, 230, 266, 588
MaeII ACGT 3 cut(s) 340, 411, 723
MaeIII GTNAC 2 cut(s) 580, 619
MalI GATC 2 cut(s) 62, 506
MboI GATC 2 cut(s) 60, 504
MboII GAAGA 6 cut(s) 90, 248, 418, 448, 451, 739
MluCI AATT 8 cut(s) 160, 349, 431, 452, 498, 509, 521, 537
MlyI GAGTC 3 cut(s) 74, 128, 263
MmeI TCCRAC 2 cut(s) 456, 649
MnlI CCTC 7 cut(s) 9, 43, 117, 163, 339, 646, 772
MroXI GAANNNNTTC 1 cut(s) 177
MseI TTAA 4 cut(s) 74, 128, 515, 524
MslI CAYNNNNRTG 2 cut(s) 578, 705
MwoI GCNNNNNNNGC 2 cut(s) 37, 363
NdeI CATATG 1 cut(s) 471
NdeII GATC 2 cut(s) 60, 504
NlaIII CATG 2 cut(s) 276, 577
NmuCI GTSAC 2 cut(s) 580, 619
OliI CACNNNNGTG 1 cut(s) 705
PdmI GAANNNNTTC 1 cut(s) 177
PleI GAGTC 3 cut(s) 73, 127, 263
PpsI GAGTC 3 cut(s) 73, 127, 263
Ppu21I YACGTR 1 cut(s) 341
RsaI GTAC 1 cut(s) 495
RsaNI GTAC 1 cut(s) 494
RseI CAYNNNNRTG 2 cut(s) 578, 705
SaqAI TTAA 4 cut(s) 74, 128, 515, 524
Sau3AI GATC 2 cut(s) 60, 504
SchI GAGTC 3 cut(s) 74, 128, 263
SfaNI GCATC 1 cut(s) 700
SmiMI CAYNNNNRTG 2 cut(s) 578, 705
SmlI CTYRAG 1 cut(s) 776
SmoI CTYRAG 1 cut(s) 776
SnaBI TACGTA 1 cut(s) 341
SpeI ACTAGT 1 cut(s) 229
Sse9I AATT 8 cut(s) 160, 349, 431, 452, 498, 509, 521, 537
SsiI CCGC 1 cut(s) 333
SspMI CTAG 5 cut(s) 36, 110, 230, 266, 588
TaaI ACNGT 2 cut(s) 676, 798
TaiI ACGT 3 cut(s) 343, 414, 726
TaqI TCGA 2 cut(s) 63, 353
TasI AATT 8 cut(s) 160, 349, 431, 452, 498, 509, 521, 537
TatI WGTACW 1 cut(s) 493
Tru1I TTAA 4 cut(s) 74, 128, 515, 524
Tru9I TTAA 4 cut(s) 74, 128, 515, 524
TscAI CASTG 4 cut(s) 18, 373, 585, 759
TseFI GTSAC 2 cut(s) 580, 619
Tsp45I GTSAC 2 cut(s) 580, 619
TspDTI ATGAA 2 cut(s) 320, 678
TspRI CASTG 4 cut(s) 18, 373, 585, 759
XapI RAATTY 2 cut(s) 349, 452
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 483
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 5 cut(s) 36, 110, 230, 266, 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.