Rorug02G0068600

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014886
Physical Location & Seq
Forward (+)
5339065 .. 5340537
1473 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0068600.1

Sequence Viewer

Length: 819 bp
ATGGGAAGAGCTCCATGCTGTGACAAATCTAAAGTGAAAAGAGGACCATGGTCTCCCGAAGAAGACGCCACCCTCAAGAACTACCTCCACGAACATGGCACCACTGGCAATTGGATTACTCTACCAACCAAAGCAGGCCTGAATCGTTGCGGTAAGAGTTGTCGTTTGAGATGGCTGAACTATCTTAGGCCAGACATCAAGCGTGGTACTTTCACGGAGGAAGAAGACAATGTTATCTGCACTCTCTTTAGAAGCATTGGAAGCAGGTGGTCTGTCATAGCTTCTCAACTGCCAGGACGAACAGATAATGATGTGAAAAACTATTGGAACACAAAGTTGAAGAAAAAGCTGCTGGCGGTTGCTGCAAGAAATAACATTGTGGCTACTAGACAGACATGTGATCACAACATTGCTCAGTTTTCAGCTCCAGTTCCTCCCAAAATCGAAACCCCTCATGGCCCTGAGACTTCATCTTGTTTAGGTGGCACATTACCATATGCAGCGAACATAAGTTCGGTGCATAGTTTTGATCAACCAAAGCAAACTTTTGAACCCTGGTGCAATCATTCTGATTCAAAGCCTATGGAAGTTTCTGATTTTGGCAGCACTAGTGAAAGTAACAGTTTCAGTATTCCACTATCTCATCAGGGAGTTTCAAGTCTTCCCAGTTCATCCAGTCTGGCTCAGCTGGATCAGTACCATTGCTCCTTGTGGTCTGGATATGAAGGTATCAATTACGTTAACAGCGAGTTCCTTATGGACTTCGGATTCAAAACTCCTCCTGGTGATCATTTTCTTCTGGGTGGCTTTGGTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

272

Amino Acids

30.18

Weight (kDa)

8.05

Isoelectric Point (pI)

55.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 62 1.9e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 1.8e-10 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 68 - 111 6.6e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 116 6.2e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35660
fragaria_vesca FvH4_1g10680
malus_domestica MD02G1120700.v1.1 MD15G1234600.v1.1
prunus_persica Prupe.7G178300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0097851
rosa_laevigata RLG00000016740
rosa_multiflora Rmu_sc0000974.1_g000028 Rmu_sc0008442.1_g000011
rosa_roxburghii Rroxscaffold_2G00144530
rosa_rugosa Rorug02G0068600
rosa_samantha Rh2AG115300 Rh2BG118200 Rh2CG119800 Rh2DG119500
rosa_wichuraiana Rw2G009010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 255
Acc36I ACCTGC 1 cut(s) 255
AccB1I GGYRCC 1 cut(s) 98
AciI CCGC 2 cut(s) 150, 356
AclWI GGATC 1 cut(s) 699
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 2 cut(s) 208, 698
AflIII ACRYGT 1 cut(s) 395
AgsI TTSAA 5 cut(s) 340, 551, 576, 657, 772
AhlI ACTAGT 1 cut(s) 608
AjnI CCWGG 3 cut(s) 292, 554, 781
AluBI AGCT 5 cut(s) 11, 281, 349, 425, 688
AluI AGCT 5 cut(s) 11, 281, 349, 425, 688
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 2 cut(s) 57, 458
AlwI GGATC 1 cut(s) 699
AoxI GGCC 3 cut(s) 136, 188, 457
ApeKI GCWGC 4 cut(s) 349, 362, 500, 603
AspS9I GGNCC 2 cut(s) 44, 458
AsuHPI GGTGA 1 cut(s) 797
AvaII GGWCC 1 cut(s) 44
BanI GGYRCC 1 cut(s) 98
BanII GRGCYC 1 cut(s) 13
BbsI GAAGAC 3 cut(s) 69, 231, 653
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 4 cut(s) 336, 349, 512, 615
BccI CCATC 1 cut(s) 165
BciT130I CCWGG 3 cut(s) 294, 556, 783
BclI TGATCA 3 cut(s) 400, 529, 787
BcoDI GTCTC 2 cut(s) 57, 458
BcuI ACTAGT 1 cut(s) 608
BfaI CTAG 2 cut(s) 387, 609
BfuAI ACCTGC 1 cut(s) 255
BisI GCNGC 4 cut(s) 350, 363, 501, 604
BlpI GCTNAGC 1 cut(s) 684
BlsI GCNGC 4 cut(s) 351, 364, 502, 605
Bme1390I CCNGG 3 cut(s) 294, 556, 783
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 2 cut(s) 44, 458
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 3 cut(s) 294, 556, 783
BmrI ACTGGG 1 cut(s) 660
BmuI ACTGGG 1 cut(s) 660
BoxI GACNNNNGTC 1 cut(s) 49
BpiI GAAGAC 3 cut(s) 69, 231, 653
BpmI CTGGAG 1 cut(s) 411
Bpu1102I GCTNAGC 1 cut(s) 684
BpuEI CTTGAG 1 cut(s) 59
BsaHI GRCGYC 1 cut(s) 66
BsaI GGTCTC 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 47, 554
BsaXI ACNNNNNCTCC 2 cut(s) 689, 719
Bse1I ACTGG 4 cut(s) 109, 428, 666, 675
Bse3DI GCAATG 2 cut(s) 408, 700
BseBI CCWGG 3 cut(s) 294, 556, 783
BseDI CCNNGG 2 cut(s) 47, 554
BseGI GGATG 1 cut(s) 671
BseMI GCAATG 2 cut(s) 408, 700
BseMII CTCAG 3 cut(s) 428, 453, 698
BseNI ACTGG 4 cut(s) 109, 428, 666, 675
BseRI GAGGAG 1 cut(s) 768
BseXI GCAGC 4 cut(s) 336, 349, 512, 615
BsgI GTGCAG 1 cut(s) 223
BshFI GGCC 3 cut(s) 138, 190, 459
BshNI GGYRCC 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 13
BsmAI GTCTC 2 cut(s) 57, 458
BsnI GGCC 3 cut(s) 138, 190, 459
Bso31I GGTCTC 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 4 cut(s) 400, 529, 691, 787
Bsp1720I GCTNAGC 1 cut(s) 684
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 2 cut(s) 150, 356
BspANI GGCC 3 cut(s) 138, 190, 459
BspCNI CTCAG 3 cut(s) 427, 454, 697
BspLI GGNNCC 1 cut(s) 100
BspMI ACCTGC 1 cut(s) 255
BspPI GGATC 1 cut(s) 699
BspT107I GGYRCC 1 cut(s) 98
BspTNI GGTCTC 1 cut(s) 57
BsrDI GCAATG 2 cut(s) 408, 700
BsrI ACTGG 4 cut(s) 109, 428, 666, 675
BssECI CCNNGG 2 cut(s) 47, 554
BssMI GATC 4 cut(s) 400, 529, 691, 787
BssNI GRCGYC 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 3 cut(s) 294, 556, 783
Bst4CI ACNGT 1 cut(s) 623
BstACI GRCGYC 1 cut(s) 66
BstC8I GCNNGC 2 cut(s) 136, 354
BstDEI CTNAG 4 cut(s) 185, 414, 462, 684
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 1 cut(s) 671
BstKTI GATC 4 cut(s) 403, 532, 694, 790
BstMAI GTCTC 2 cut(s) 57, 458
BstMBI GATC 4 cut(s) 400, 529, 691, 787
BstMWI GCNNNNNNNGC 3 cut(s) 105, 261, 362
BstNI CCWGG 3 cut(s) 294, 556, 783
BstNSI RCATGY 1 cut(s) 399
BstPAI GACNNNNGTC 1 cut(s) 49
BstSCI CCNGG 3 cut(s) 292, 554, 781
BstV1I GCAGC 4 cut(s) 336, 349, 512, 615
BstV2I GAAGAC 3 cut(s) 69, 231, 653
BstXI CCANNNNNNTGG 1 cut(s) 95
BsuRI GGCC 3 cut(s) 138, 190, 459
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 1 cut(s) 671
BtsIMutI CAGTG 1 cut(s) 102
BveI ACCTGC 1 cut(s) 255
Cac8I GCNNGC 2 cut(s) 136, 354
Cfr13I GGNCC 2 cut(s) 44, 458
CseI GACGC 1 cut(s) 74
Csp6I GTAC 2 cut(s) 207, 697
CviAII CATG 5 cut(s) 15, 48, 95, 396, 455
CviQI GTAC 2 cut(s) 207, 697
DdeI CTNAG 4 cut(s) 185, 414, 462, 684
DpnI GATC 4 cut(s) 402, 531, 693, 789
DpnII GATC 4 cut(s) 400, 529, 691, 787
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 47
Eco147I AGGCCT 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 13
Eco31I GGTCTC 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 44
Eco53kI GAGCTC 1 cut(s) 11
EcoICRI GAGCTC 1 cut(s) 11
EcoRII CCWGG 3 cut(s) 292, 554, 781
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 5 cut(s) 18, 51, 98, 399, 458
FatI CATG 5 cut(s) 14, 47, 94, 395, 454
FauNDI CATATG 1 cut(s) 496
FbaI TGATCA 3 cut(s) 400, 529, 787
Fnu4HI GCNGC 4 cut(s) 350, 363, 501, 604
FokI GGATG 1 cut(s) 658
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 4 cut(s) 350, 363, 501, 604
FspBI CTAG 2 cut(s) 387, 609
GluI GCNGC 4 cut(s) 350, 363, 501, 604
GsuI CTGGAG 1 cut(s) 411
HaeIII GGCC 3 cut(s) 138, 190, 459
HgaI GACGC 1 cut(s) 74
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 5 cut(s) 18, 51, 98, 399, 458
HincII GTYRAC 1 cut(s) 742
HindII GTYRAC 1 cut(s) 742
HinfI GANTC 3 cut(s) 142, 572, 768
HpaI GTTAAC 1 cut(s) 742
HphI GGTGA 1 cut(s) 797
Hpy166II GTNNAC 1 cut(s) 742
Hpy188I TCNGA 3 cut(s) 571, 595, 767
Hpy188III TCNNGA 3 cut(s) 56, 76, 717
Hpy8I GTNNAC 1 cut(s) 742
HpyAV CCTTC 1 cut(s) 719
HpyCH4III ACNGT 1 cut(s) 623
HpyCH4IV ACGT 1 cut(s) 738
HpyCH4V TGCA 5 cut(s) 240, 365, 500, 520, 561
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 261, 362
HpyF3I CTNAG 4 cut(s) 185, 414, 462, 684
HpySE526I ACGT 1 cut(s) 738
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 5 cut(s) 18, 51, 98, 399, 458
Ksp22I TGATCA 3 cut(s) 400, 529, 787
KspAI GTTAAC 1 cut(s) 742
Kzo9I GATC 4 cut(s) 400, 529, 691, 787
LmnI GCTCC 3 cut(s) 16, 430, 710
Lsp1109I GCAGC 4 cut(s) 336, 349, 512, 615
MaeI CTAG 2 cut(s) 387, 609
MaeII ACGT 1 cut(s) 738
MaeIII GTNAC 2 cut(s) 20, 617
MalI GATC 4 cut(s) 402, 531, 693, 789
MboI GATC 4 cut(s) 400, 529, 691, 787
MboII GAAGA 8 cut(s) 18, 71, 74, 233, 236, 352, 653, 788
MfeI CAATTG 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 2 cut(s) 109, 733
MnlI CCTC 7 cut(s) 35, 83, 95, 211, 444, 462, 789
MseI TTAA 1 cut(s) 741
MslI CAYNNNNRTG 1 cut(s) 93
MspA1I CMGCKG 1 cut(s) 688
MspR9I CCNGG 3 cut(s) 294, 556, 783
MunI CAATTG 1 cut(s) 109
MvaI CCWGG 3 cut(s) 294, 556, 783
MwoI GCNNNNNNNGC 3 cut(s) 105, 261, 362
NcoI CCATGG 1 cut(s) 47
NdeI CATATG 1 cut(s) 496
NdeII GATC 4 cut(s) 400, 529, 691, 787
NlaIII CATG 5 cut(s) 18, 51, 98, 399, 458
NlaIV GGNNCC 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 20
NspI RCATGY 1 cut(s) 399
PaqCI CACCTGC 1 cut(s) 255
PceI AGGCCT 1 cut(s) 138
PciI ACATGT 1 cut(s) 395
PcsI WCGNNNNNNNCGW 1 cut(s) 744
PfeI GAWTC 3 cut(s) 142, 572, 768
PkrI GCNGC 4 cut(s) 351, 364, 502, 605
PscI ACATGT 1 cut(s) 395
PshAI GACNNNNGTC 1 cut(s) 49
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 3 cut(s) 292, 554, 781
PspGI CCWGG 3 cut(s) 292, 554, 781
PspN4I GGNNCC 1 cut(s) 100
PspPI GGNCC 2 cut(s) 44, 458
PvuII CAGCTG 1 cut(s) 688
RsaI GTAC 2 cut(s) 208, 698
RsaNI GTAC 2 cut(s) 207, 697
RseI CAYNNNNRTG 1 cut(s) 93
SacI GAGCTC 1 cut(s) 13
SaqAI TTAA 1 cut(s) 741
SatI GCNGC 4 cut(s) 350, 363, 501, 604
Sau3AI GATC 4 cut(s) 400, 529, 691, 787
Sau96I GGNCC 2 cut(s) 44, 458
ScrFI CCNGG 3 cut(s) 294, 556, 783
SduI GDGCHC 1 cut(s) 13
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
SpeI ACTAGT 1 cut(s) 608
Sse9I AATT 2 cut(s) 109, 733
SseBI AGGCCT 1 cut(s) 138
SsiI CCGC 2 cut(s) 150, 356
SspMI CTAG 2 cut(s) 387, 609
SstI GAGCTC 1 cut(s) 13
StuI AGGCCT 1 cut(s) 138
StyD4I CCNGG 3 cut(s) 292, 554, 781
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 1 cut(s) 623
TaiI ACGT 1 cut(s) 741
TaqI TCGA 1 cut(s) 444
TasI AATT 2 cut(s) 109, 733
TfiI GAWTC 3 cut(s) 142, 572, 768
Tru1I TTAA 1 cut(s) 741
Tru9I TTAA 1 cut(s) 741
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 4 cut(s) 349, 362, 500, 603
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 3 cut(s) 459, 660, 738
TspGWI ACGGA 1 cut(s) 230
TspRI CASTG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 44
XceI RCATGY 1 cut(s) 399
XspI CTAG 2 cut(s) 387, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.