MD02G1120700.v1.1

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0014886
Physical Location & Seq
Forward (+)
9863312 .. 9864205
894 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1120700.v1.1.491

Sequence Viewer

Length: 894 bp
ATGGCTGTTTCATTTGCATCCATAGTGCCTCTGAGGTCTATTAGCCTACCATCTAGGCTAAACCCTAAATCCCAAAAAATTGAGTCAGATTTAAACAAGTTAAAGGCTTCCAAATTTTCAAGTTCTCTAGTGAGTGAGGATCTTCTGGTGGGCTTGTCTGGTCTAGCAGAGTTGTACAATTGCATTGAGGAACTTGTTCTCTCTCCACTGACCCAACAAGCACTTCTCAACCAGCAGTGCAAAGCACTTGTGGAAGAAGCACTTGACGGGTCAGTAGGGTTGCTAGACTCATGTGCTAGTGCAAGAGACATACTCTTGACAATGAAGGAACATGTTCAGAACATCCAATCTGCATTGCGCAGGAGGACCGGAGCTTCAAGCATTGAAACCAGCGTTCATTCCTACATTTGCTTCCGAAAAAAGGCAAGGAAGAGCATTGCAAAGAGCCTCAGAGATTTGAAGAAAATGGAAACAAATCTTGGGTCATTCCATCTGTTGGATTGCGACTACAATGTACAAATAGTGCTTAAAATGTTAAGAGAATTAAGCGATGTAACAATTTCCGCATTTCAATCCCTTTTCATGTTTCTATCCATGCCTGAAACCAGCGCTAAGGGTAGCAAATGGTCATTGGTGCCGAAACTAATGGCAGCGAAATTCGCAGCCGCACAAAAAGACCAAAAGGTTTACAATGAAGTGGGAAGTGTTGATGTTGCTCTTTGCTCACTACGTGGTAATACCAGAAAGAGTGATCCCAAGACTGATGTGCAGGTGGTTCGGTGGAGACTAGACACACTTGATTGCAGCATATCTGGCCTTGAGGCTGGATTGGAAAGACTCTTCAGATGCCTATTGCAACATAGAGTGTCTCTACTTAATGTCCTTACACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

298

Amino Acids

32.85

Weight (kDa)

9.16

Isoelectric Point (pI)

44.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 51 - 294 1.9e-78 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35660
fragaria_vesca FvH4_1g10680
malus_domestica MD02G1120700.v1.1 MD15G1234600.v1.1
prunus_persica Prupe.7G178300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0097851
rosa_laevigata RLG00000016740
rosa_multiflora Rmu_sc0000974.1_g000028 Rmu_sc0008442.1_g000011
rosa_roxburghii Rroxscaffold_2G00144530
rosa_rugosa Rorug02G0068600
rosa_samantha Rh2AG115300 Rh2BG118200 Rh2CG119800 Rh2DG119500
rosa_wichuraiana Rw2G009010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 760
Acc16I TGCGCA 1 cut(s) 359
Acc36I ACCTGC 1 cut(s) 760
AccB1I GGYRCC 1 cut(s) 634
AccB7I CCANNNNNTGG 1 cut(s) 496
AciI CCGC 2 cut(s) 564, 666
AclWI GGATC 2 cut(s) 147, 746
AcsI RAATTY 2 cut(s) 113, 656
AcuI CTGAAG 1 cut(s) 826
AdeI CACNNNGTG 1 cut(s) 731
AfaI GTAC 2 cut(s) 176, 516
AfeI AGCGCT 1 cut(s) 610
AfiI CCNNNNNNNGG 2 cut(s) 421, 496
AflIII ACRYGT 1 cut(s) 331
AgsI TTSAA 5 cut(s) 120, 378, 386, 460, 572
AjuI GAANNNNNNNTTGG 4 cut(s) 207, 239, 462, 494
AluBI AGCT 1 cut(s) 374
AluI AGCT 1 cut(s) 374
Alw26I GTCTC 3 cut(s) 300, 778, 873
AlwI GGATC 2 cut(s) 147, 746
Aor51HI AGCGCT 1 cut(s) 610
AoxI GGCC 1 cut(s) 814
ApeKI GCWGC 3 cut(s) 650, 662, 804
ApoI RAATTY 2 cut(s) 113, 656
ArsI GACNNNNNNTTYG 2 cut(s) 467, 499
Asp700I GAANNNNTTC 2 cut(s) 195, 333
AspLEI GCGC 2 cut(s) 360, 611
AspS9I GGNCC 1 cut(s) 366
AvaII GGWCC 1 cut(s) 366
BanI GGYRCC 1 cut(s) 634
BbvI GCAGC 3 cut(s) 662, 674, 816
BccI CCATC 2 cut(s) 58, 498
BcgI CGANNNNNNTGC 2 cut(s) 758, 792
BcoDI GTCTC 3 cut(s) 300, 778, 873
BfaI CTAG 6 cut(s) 54, 128, 164, 284, 297, 788
BfoI RGCGCY 1 cut(s) 612
BfuAI ACCTGC 1 cut(s) 760
BisI GCNGC 4 cut(s) 651, 663, 666, 805
BlsI GCNGC 4 cut(s) 652, 664, 667, 806
Bme18I GGWCC 1 cut(s) 366
BmgT120I GGNCC 1 cut(s) 366
BmiI GGNNCC 1 cut(s) 636
BmsI GCATC 2 cut(s) 26, 836
BplI GAGNNNNNCTC 2 cut(s) 297, 329
Bpu10I CCTNAGC 1 cut(s) 612
BpuEI CTTGAG 1 cut(s) 839
BsaAI YACGTR 1 cut(s) 731
BsaWI WCCGGW 1 cut(s) 368
Bsc4I CCNNNNNNNGG 2 cut(s) 421, 496
Bse3DI GCAATG 2 cut(s) 353, 435
BseGI GGATG 2 cut(s) 17, 342
BseLI CCNNNNNNNGG 2 cut(s) 421, 496
BseMI GCAATG 2 cut(s) 353, 435
BseMII CTCAG 2 cut(s) 23, 463
BseXI GCAGC 3 cut(s) 662, 674, 816
BsgI GTGCAG 1 cut(s) 788
BshFI GGCC 1 cut(s) 816
BshNI GGYRCC 1 cut(s) 634
BsiSI CCGG 1 cut(s) 369
BslI CCNNNNNNNGG 2 cut(s) 421, 496
BsmAI GTCTC 3 cut(s) 300, 778, 873
BsnI GGCC 1 cut(s) 816
Bsp1407I TGTACA 2 cut(s) 174, 514
Bsp143I GATC 2 cut(s) 139, 751
BspACI CCGC 2 cut(s) 564, 666
BspANI GGCC 1 cut(s) 816
BspCNI CTCAG 2 cut(s) 24, 462
BspLI GGNNCC 1 cut(s) 636
BspMI ACCTGC 1 cut(s) 760
BspPI GGATC 2 cut(s) 147, 746
BspQI GCTCTTC 1 cut(s) 425
BspT107I GGYRCC 1 cut(s) 634
BsrDI GCAATG 2 cut(s) 353, 435
BsrGI TGTACA 2 cut(s) 174, 514
BssMI GATC 2 cut(s) 139, 751
Bst6I CTCTTC 2 cut(s) 425, 845
BstAUI TGTACA 2 cut(s) 174, 514
BstBAI YACGTR 1 cut(s) 731
BstDEI CTNAG 3 cut(s) 32, 449, 612
BstF5I GGATG 2 cut(s) 17, 342
BstH2I RGCGCY 1 cut(s) 612
BstHHI GCGC 2 cut(s) 360, 611
BstKTI GATC 2 cut(s) 142, 754
BstMAI GTCTC 3 cut(s) 300, 778, 873
BstMBI GATC 2 cut(s) 139, 751
BstMWI GCNNNNNNNGC 2 cut(s) 659, 813
BstNSI RCATGY 1 cut(s) 335
BstV1I GCAGC 3 cut(s) 662, 674, 816
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BsuRI GGCC 1 cut(s) 816
BtgZI GCGATG 1 cut(s) 564
BtsCI GGATG 2 cut(s) 17, 342
BtsI GCAGTG 1 cut(s) 242
BtsIMutI CAGTG 2 cut(s) 206, 242
BveI ACCTGC 1 cut(s) 760
CfoI GCGC 2 cut(s) 360, 611
Cfr13I GGNCC 1 cut(s) 366
Csp6I GTAC 2 cut(s) 175, 515
CviAII CATG 4 cut(s) 291, 332, 583, 595
CviQI GTAC 2 cut(s) 175, 515
DdeI CTNAG 3 cut(s) 32, 449, 612
DpnI GATC 2 cut(s) 141, 753
DpnII GATC 2 cut(s) 139, 751
DraI TTTAAA 1 cut(s) 93
DraIII CACNNNGTG 1 cut(s) 731
Eam1104I CTCTTC 2 cut(s) 425, 845
EarI CTCTTC 2 cut(s) 425, 845
Eco47I GGWCC 1 cut(s) 366
Eco47III AGCGCT 1 cut(s) 610
Eco57I CTGAAG 1 cut(s) 826
FaeI CATG 4 cut(s) 294, 335, 586, 598
FaiI YATR 8 cut(s) 23, 292, 311, 333, 584, 596, 809, 861
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FatI CATG 4 cut(s) 290, 331, 582, 594
Fnu4HI GCNGC 4 cut(s) 651, 663, 666, 805
FokI GGATG 2 cut(s) 4, 329
Fsp4HI GCNGC 4 cut(s) 651, 663, 666, 805
FspBI CTAG 6 cut(s) 54, 128, 164, 284, 297, 788
FspI TGCGCA 1 cut(s) 359
GlaI GCGC 2 cut(s) 359, 610
GluI GCNGC 4 cut(s) 651, 663, 666, 805
HaeII RGCGCY 1 cut(s) 612
HaeIII GGCC 1 cut(s) 816
HapII CCGG 1 cut(s) 369
HhaI GCGC 2 cut(s) 360, 611
Hin1II CATG 4 cut(s) 294, 335, 586, 598
Hin6I GCGC 2 cut(s) 358, 609
HinP1I GCGC 2 cut(s) 358, 609
HinfI GANTC 3 cut(s) 83, 287, 837
HpaII CCGG 1 cut(s) 369
Hpy166II GTNNAC 1 cut(s) 688
Hpy188I TCNGA 6 cut(s) 33, 88, 339, 416, 452, 845
Hpy188III TCNNGA 1 cut(s) 316
Hpy8I GTNNAC 1 cut(s) 688
HpyAV CCTTC 1 cut(s) 319
HpyCH4IV ACGT 1 cut(s) 730
HpyCH4V TGCA 9 cut(s) 17, 183, 240, 302, 353, 440, 769, 804, 856
HpyF10VI GCNNNNNNNGC 2 cut(s) 659, 813
HpyF3I CTNAG 3 cut(s) 32, 449, 612
HpySE526I ACGT 1 cut(s) 730
Hsp92II CATG 4 cut(s) 294, 335, 586, 598
HspAI GCGC 2 cut(s) 358, 609
Kzo9I GATC 2 cut(s) 139, 751
LguI GCTCTTC 1 cut(s) 425
LmnI GCTCC 1 cut(s) 371
Lsp1109I GCAGC 3 cut(s) 662, 674, 816
LweI GCATC 2 cut(s) 26, 836
MaeI CTAG 6 cut(s) 54, 128, 164, 284, 297, 788
MaeII ACGT 1 cut(s) 730
MaeIII GTNAC 1 cut(s) 553
MalI GATC 2 cut(s) 141, 753
MboI GATC 2 cut(s) 139, 751
MboII GAAGA 5 cut(s) 134, 266, 442, 472, 832
MfeI CAATTG 1 cut(s) 178
MflI RGATCY 1 cut(s) 139
MluCI AATT 6 cut(s) 78, 113, 178, 542, 558, 656
MlyI GAGTC 3 cut(s) 92, 281, 831
MmeI TCCRAC 1 cut(s) 477
MnlI CCTC 7 cut(s) 27, 39, 130, 181, 357, 458, 814
MroXI GAANNNNTTC 2 cut(s) 195, 333
MseI TTAA 6 cut(s) 92, 101, 528, 536, 545, 876
MspI CCGG 1 cut(s) 369
MunI CAATTG 1 cut(s) 178
MwoI GCNNNNNNNGC 2 cut(s) 659, 813
NdeII GATC 2 cut(s) 139, 751
NlaIII CATG 4 cut(s) 294, 335, 586, 598
NlaIV GGNNCC 1 cut(s) 636
NsbI TGCGCA 1 cut(s) 359
NspI RCATGY 1 cut(s) 335
PaqCI CACCTGC 1 cut(s) 760
PciI ACATGT 1 cut(s) 331
PciSI GCTCTTC 1 cut(s) 425
PdmI GAANNNNTTC 2 cut(s) 195, 333
PflMI CCANNNNNTGG 1 cut(s) 496
PkrI GCNGC 4 cut(s) 652, 664, 667, 806
PleI GAGTC 3 cut(s) 91, 281, 831
PpsI GAGTC 3 cut(s) 91, 281, 831
Ppu21I YACGTR 1 cut(s) 731
PscI ACATGT 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 636
PspPI GGNCC 1 cut(s) 366
PsuI RGATCY 1 cut(s) 139
RsaI GTAC 2 cut(s) 176, 516
RsaNI GTAC 2 cut(s) 175, 515
SapI GCTCTTC 1 cut(s) 425
SaqAI TTAA 6 cut(s) 92, 101, 528, 536, 545, 876
SatI GCNGC 4 cut(s) 651, 663, 666, 805
Sau3AI GATC 2 cut(s) 139, 751
Sau96I GGNCC 1 cut(s) 366
SchI GAGTC 3 cut(s) 92, 281, 831
SetI ASST 6 cut(s) 38, 376, 687, 733, 774, 892
SfaNI GCATC 2 cut(s) 26, 836
SinI GGWCC 1 cut(s) 366
SmlI CTYRAG 1 cut(s) 818
SmoI CTYRAG 1 cut(s) 818
Sse9I AATT 6 cut(s) 78, 113, 178, 542, 558, 656
SsiI CCGC 2 cut(s) 564, 666
SspMI CTAG 6 cut(s) 54, 128, 164, 284, 297, 788
TaiI ACGT 1 cut(s) 733
TasI AATT 6 cut(s) 78, 113, 178, 542, 558, 656
TatI WGTACW 2 cut(s) 174, 514
TauI GCSGC 1 cut(s) 668
Tru1I TTAA 6 cut(s) 92, 101, 528, 536, 545, 876
Tru9I TTAA 6 cut(s) 92, 101, 528, 536, 545, 876
TscAI CASTG 2 cut(s) 213, 242
TseI GCWGC 3 cut(s) 650, 662, 804
TspDTI ATGAA 4 cut(s) 338, 386, 571, 708
TspRI CASTG 2 cut(s) 213, 242
Van91I CCANNNNNTGG 1 cut(s) 496
VpaK11BI GGWCC 1 cut(s) 366
XapI RAATTY 2 cut(s) 113, 656
XceI RCATGY 1 cut(s) 335
XmnI GAANNNNTTC 2 cut(s) 195, 333
XspI CTAG 6 cut(s) 54, 128, 164, 284, 297, 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.