AT4G35880

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
16993062 .. 16995821
2760 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G35880.1

Sequence Viewer

Length: 1575 bp
ATGTCGTGCTGTTTCTTCAAGACTACTCTGTTCTTGATCCCGATTTTGATGTTACTGAGCTTCGGGAGCTGCAATGGTCGAATCTTCACCTTCGAGATGCACCATAGATTCTCCGACGAAGTCAAGCAATGGTCCGATTCCACCGGGAGATTTGCTAAGTTTCCCCCTAAAGGAAGCTTCGAATACTTCAACGCTCTCGTCCTCCGTGATTGGCTAATCCGTGGCCGTCGTCTCTCCGAGTCGGAATCGGAATCGGAGTCGTCGCTTACTTTCTCCGACGGCAATTCCACTTCTCGTATCAGCTCTCTCGGATTTTTGCATTACACGACGGTGAAATTGGGTACTCCGGGAATGAGATTCATGGTGGCGCTTGATACAGGAAGCGACCTCTTTTGGGTCCCTTGTGATTGCGGCAAATGCGCACCAACCGAAGGAGCCACTTATGCTTCTGAGTTTGAACTCAGCATTTACAATCCTAAAGTTTCAACTACAAATAAGAAGGTCACCTGCAACAACAGTCTATGTGCACAGCGTAATCAGTGCCTTGGAACATTCAGCACTTGCCCTTATATGGTGTCTTATGTCTCTGCTCAGACTTCGACATCTGGTATTCTTATGGAAGATGTTATGCACTTAACAACAGAAGATAAGAATCCAGAGCGTGTTGAGGCATATGTCACATTTGGATGTGGACAGGTTCAAAGTGGTTCTTTTCTTGACATTGCAGCACCAAATGGTTTATTTGGTCTTGGCATGGAAAAGATATCGGTTCCAAGTGTTTTGGCGAGGGAAGGTCTGGTTGCTGATTCTTTCTCCATGTGTTTCGGTCATGATGGAGTTGGAAGGATCAGTTTTGGGGACAAGGGTAGTTCTGATCAGGAAGAGACACCGTTTAATCTCAATCCTTCACATCCAAACTACAACATCACGGTGACTCGGGTACGTGTGGGGACTACTTTAATAGATGATGAGTTCACAGCTCTCTTTGACACCGGTACATCATTTACTTATTTGGTTGATCCAATGTATACGACAGTCTCTGAGAGTTTCCATTCTCAGGCCCAAGATAAGCGCCATTCACCGGATTCAAGGATTCCATTTGAGTATTGTTATGACATGAGCAATGACGCGAATGCCAGTTTGATACCGAGTTTAAGCTTAACAATGAAAGGAAACAGTCACTTCACCATCAACGATCCTATAATCGTCATCTCTACTGAGGGCGAACTTGTATATTGCCTGGCCATTGTCAAAAGCTCTGAACTCAACATTATTGGGCAAAACTACATGACCGGGTATCGTGTAGTATTCGACAGGGAGAAACTCGTCTTAGCTTGGAAAAAGTTTGACTGTTATGATATCGAAGAGACAAACACAACTGTTGCCGGAACAAACAAAACAGCAGCGGTAGCTCCAGCAATGGCAGCTGGAATAAAGACTCATAACAATTCCTCAGAGCTACACAAAACAAACCAAACCATCTCCAAAAGTAACTCCTCCCCAAACCAAATATCCAAAACAGTAGATGTATGGTCTTTTTTCAGATTTGTGTTCATATTACTTCCACTTGTGTAG

Protein Analysis

524

Amino Acids

58.05

Weight (kDa)

5.45

Isoelectric Point (pI)

39.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 108 - 287 4.5e-36 Xylanase inhibitor N-terminal
Asp PF00026 108 - 441 1.5e-20 Eukaryotic aspartyl protease
TAXi_C PF14541 307 - 446 1.4e-18 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 515
Acc16I TGCGCA 1 cut(s) 421
Acc36I ACCTGC 1 cut(s) 515
AccI GTMKAC 1 cut(s) 1028
AccII CGCG 1 cut(s) 1130
AciI CCGC 2 cut(s) 411, 1406
AclWI GGATC 4 cut(s) 31, 854, 1013, 1190
AcoI YGGCCR 2 cut(s) 223, 1242
AfaI GTAC 3 cut(s) 343, 942, 997
AfiI CCNNNNNNNGG 6 cut(s) 170, 394, 431, 571, 1057, 1081
AflIII ACRYGT 1 cut(s) 943
AgeI ACCGGT 1 cut(s) 992
AgsI TTSAA 6 cut(s) 19, 190, 458, 486, 701, 1089
AjnI CCWGG 1 cut(s) 1239
AleI CACNNNNGTG 1 cut(s) 329
Alw21I GWGCWC 1 cut(s) 529
Alw26I GTCTC 5 cut(s) 236, 589, 878, 1042, 1361
Alw44I GTGCAC 1 cut(s) 525
AlwI GGATC 4 cut(s) 31, 854, 1013, 1190
AlwNI CAGNNNCTG 1 cut(s) 1040
Ama87I CYCGRG 1 cut(s) 936
AoxI GGCC 3 cut(s) 223, 1059, 1242
ApaLI GTGCAC 1 cut(s) 525
ApeKI GCWGC 4 cut(s) 69, 725, 1403, 1424
AsiGI ACCGGT 1 cut(s) 992
AspLEI GCGC 3 cut(s) 370, 422, 1074
AspS9I GGNCC 3 cut(s) 132, 397, 1060
AsuC2I CCSGG 3 cut(s) 145, 348, 1294
AsuHPI GGTGA 6 cut(s) 79, 343, 496, 943, 1071, 1177
AsuII TTCGAA 1 cut(s) 180
AvaI CYCGRG 1 cut(s) 936
AvaII GGWCC 2 cut(s) 132, 397
BaeGI GKGCMC 1 cut(s) 529
BalI TGGCCA 1 cut(s) 1244
Bbv12I GWGCWC 1 cut(s) 529
BbvI GCAGC 4 cut(s) 56, 737, 1415, 1436
BccI CCATC 3 cut(s) 827, 1196, 1487
BceAI ACGGC 2 cut(s) 210, 295
BciT130I CCWGG 1 cut(s) 1241
BclI TGATCA 1 cut(s) 874
BcnI CCSGG 3 cut(s) 145, 348, 1294
BcoDI GTCTC 5 cut(s) 236, 589, 878, 1042, 1361
BfoI RGCGCY 2 cut(s) 371, 1075
BfuAI ACCTGC 1 cut(s) 515
BisI GCNGC 5 cut(s) 70, 412, 726, 1404, 1425
BlsI GCNGC 5 cut(s) 71, 413, 727, 1405, 1426
Bme1390I CCNGG 4 cut(s) 145, 348, 1241, 1294
Bme18I GGWCC 2 cut(s) 132, 397
BmeT110I CYCGRG 1 cut(s) 936
BmgT120I GGNCC 3 cut(s) 132, 397, 1060
BmiI GGNNCC 4 cut(s) 398, 399, 436, 771
BmrFI CCNGG 4 cut(s) 145, 348, 1241, 1294
BmsI GCATC 1 cut(s) 87
BpmI CTGGAG 1 cut(s) 1398
Bpu14I TTCGAA 1 cut(s) 180
BpuMI CCSGG 3 cut(s) 145, 348, 1294
BsaAI YACGTR 1 cut(s) 944
BsaBI GATNNNNATC 1 cut(s) 651
BsaJI CCNNGG 2 cut(s) 220, 544
BsaWI WCCGGW 2 cut(s) 992, 1081
Bsc4I CCNNNNNNNGG 6 cut(s) 170, 394, 431, 571, 1057, 1081
Bse118I RCCGGY 1 cut(s) 992
Bse1I ACTGG 1 cut(s) 1137
Bse3DI GCAATG 5 cut(s) 79, 134, 720, 1129, 1425
Bse8I GATNNNNATC 1 cut(s) 651
BseBI CCWGG 1 cut(s) 1241
BseDI CCNNGG 2 cut(s) 220, 544
BseGI GGATG 2 cut(s) 692, 910
BseJI GATNNNNATC 1 cut(s) 651
BseLI CCNNNNNNNGG 6 cut(s) 170, 394, 431, 571, 1057, 1081
BseMI GCAATG 5 cut(s) 79, 134, 720, 1129, 1425
BseMII CTCAG 8 cut(s) 47, 441, 475, 605, 1032, 1070, 1209, 1467
BseNI ACTGG 1 cut(s) 1137
BseRI GAGGAG 1 cut(s) 1486
BseSI GKGCMC 1 cut(s) 529
BseXI GCAGC 4 cut(s) 56, 737, 1415, 1436
Bsh1236I CGCG 1 cut(s) 1130
BshFI GGCC 3 cut(s) 225, 1061, 1244
BshTI ACCGGT 1 cut(s) 992
BsiHKAI GWGCWC 1 cut(s) 529
BsiHKCI CYCGRG 1 cut(s) 936
BsiSI CCGG 6 cut(s) 144, 347, 993, 1082, 1293, 1386
BslFI GGGAC 3 cut(s) 383, 872, 964
BslI CCNNNNNNNGG 6 cut(s) 170, 394, 431, 571, 1057, 1081
BsmAI GTCTC 5 cut(s) 236, 589, 878, 1042, 1361
BsmBI CGTCTC 1 cut(s) 236
BsmFI GGGAC 3 cut(s) 383, 872, 964
BsmI GAATGC 1 cut(s) 1138
BsnI GGCC 3 cut(s) 225, 1061, 1244
BsoBI CYCGRG 1 cut(s) 936
Bsp119I TTCGAA 1 cut(s) 180
Bsp1286I GDGCHC 1 cut(s) 529
Bsp143I GATC 5 cut(s) 36, 846, 874, 1018, 1195
BspACI CCGC 2 cut(s) 411, 1406
BspANI GGCC 3 cut(s) 225, 1061, 1244
BspCNI CTCAG 8 cut(s) 48, 442, 474, 604, 1033, 1069, 1210, 1466
BspFNI CGCG 1 cut(s) 1130
BspHI TCATGA 1 cut(s) 829
BspLI GGNNCC 4 cut(s) 398, 399, 436, 771
BspMI ACCTGC 1 cut(s) 515
BspPI GGATC 4 cut(s) 31, 854, 1013, 1190
BspT104I TTCGAA 1 cut(s) 180
BsrDI GCAATG 5 cut(s) 79, 134, 720, 1129, 1425
BsrFI RCCGGY 1 cut(s) 992
BsrI ACTGG 1 cut(s) 1137
BssAI RCCGGY 1 cut(s) 992
BssECI CCNNGG 2 cut(s) 220, 544
BssMI GATC 5 cut(s) 36, 846, 874, 1018, 1195
BssNAI GTATAC 1 cut(s) 1029
BssT1I CCWWGG 1 cut(s) 544
Bst1107I GTATAC 1 cut(s) 1029
Bst2UI CCWGG 1 cut(s) 1241
Bst4CI ACNGT 9 cut(s) 331, 518, 891, 931, 1036, 1178, 1352, 1381, 1522
Bst6I CTCTTC 2 cut(s) 876, 1359
BstBAI YACGTR 1 cut(s) 944
BstBI TTCGAA 1 cut(s) 180
BstDSI CCRYGG 1 cut(s) 220
BstEII GGTNACC 1 cut(s) 502
BstF5I GGATG 2 cut(s) 692, 910
BstFNI CGCG 1 cut(s) 1130
BstH2I RGCGCY 2 cut(s) 371, 1075
BstHHI GCGC 3 cut(s) 370, 422, 1074
BstKTI GATC 5 cut(s) 39, 849, 877, 1021, 1198
BstMAI GTCTC 5 cut(s) 236, 589, 878, 1042, 1361
BstMBI GATC 5 cut(s) 36, 846, 874, 1018, 1195
BstMWI GCNNNNNNNGC 5 cut(s) 66, 417, 443, 1409, 1424
BstNI CCWGG 1 cut(s) 1241
BstPI GGTNACC 1 cut(s) 502
BstSCI CCNGG 4 cut(s) 143, 346, 1239, 1292
BstSLI GKGCMC 1 cut(s) 529
BstUI CGCG 1 cut(s) 1130
BstV1I GCAGC 4 cut(s) 56, 737, 1415, 1436
BstZ17I GTATAC 1 cut(s) 1029
BsuRI GGCC 3 cut(s) 225, 1061, 1244
BtgI CCRYGG 1 cut(s) 220
BtsCI GGATG 2 cut(s) 692, 910
BtsIMutI CAGTG 1 cut(s) 545
BveI ACCTGC 1 cut(s) 515
CaiI CAGNNNCTG 1 cut(s) 1040
CciI TCATGA 1 cut(s) 829
CfoI GCGC 3 cut(s) 370, 422, 1074
Cfr10I RCCGGY 1 cut(s) 992
Cfr13I GGNCC 3 cut(s) 132, 397, 1060
CseI GACGC 1 cut(s) 1136
Csp6I GTAC 3 cut(s) 342, 941, 996
CspAI ACCGGT 1 cut(s) 992
CviAII CATG 6 cut(s) 361, 754, 817, 830, 1117, 1288
CviQI GTAC 3 cut(s) 342, 941, 996
DpnI GATC 5 cut(s) 38, 848, 876, 1020, 1197
DpnII GATC 5 cut(s) 36, 846, 874, 1018, 1195
EaeI YGGCCR 2 cut(s) 223, 1242
Eam1104I CTCTTC 2 cut(s) 876, 1359
EarI CTCTTC 2 cut(s) 876, 1359
Eco130I CCWWGG 1 cut(s) 544
Eco32I GATATC 2 cut(s) 765, 1360
Eco47I GGWCC 2 cut(s) 132, 397
Eco88I CYCGRG 1 cut(s) 936
Eco91I GGTNACC 1 cut(s) 502
EcoO109I RGGNCCY 1 cut(s) 397
EcoO65I GGTNACC 1 cut(s) 502
EcoRII CCWGG 1 cut(s) 1239
EcoRV GATATC 2 cut(s) 765, 1360
EcoT14I CCWWGG 1 cut(s) 544
ErhI CCWWGG 1 cut(s) 544
Esp3I CGTCTC 1 cut(s) 236
FaeI CATG 6 cut(s) 364, 757, 820, 833, 1120, 1291
FalI AAGNNNNNCTT 2 cut(s) 694, 726
FaqI GGGAC 3 cut(s) 383, 872, 964
FatI CATG 6 cut(s) 360, 753, 816, 829, 1116, 1287
FauNDI CATATG 1 cut(s) 673
FbaI TGATCA 1 cut(s) 874
FblI GTMKAC 1 cut(s) 1028
Fnu4HI GCNGC 5 cut(s) 70, 412, 726, 1404, 1425
FokI GGATG 2 cut(s) 699, 897
Fsp4HI GCNGC 5 cut(s) 70, 412, 726, 1404, 1425
FspAI RTGCGCAY 1 cut(s) 421
FspI TGCGCA 1 cut(s) 421
GlaI GCGC 3 cut(s) 369, 421, 1073
GluI GCNGC 5 cut(s) 70, 412, 726, 1404, 1425
GsuI CTGGAG 1 cut(s) 1398
HaeII RGCGCY 2 cut(s) 371, 1075
HaeIII GGCC 3 cut(s) 225, 1061, 1244
HapII CCGG 6 cut(s) 144, 347, 993, 1082, 1293, 1386
HgaI GACGC 1 cut(s) 1136
HhaI GCGC 3 cut(s) 370, 422, 1074
Hin1II CATG 6 cut(s) 364, 757, 820, 833, 1120, 1291
Hin6I GCGC 3 cut(s) 368, 420, 1072
HinP1I GCGC 3 cut(s) 368, 420, 1072
HindIII AAGCTT 2 cut(s) 175, 1156
HpaII CCGG 6 cut(s) 144, 347, 993, 1082, 1293, 1386
HphI GGTGA 6 cut(s) 79, 343, 496, 943, 1071, 1177
Hpy166II GTNNAC 4 cut(s) 527, 692, 975, 1029
Hpy188III TCNNGA 9 cut(s) 19, 34, 40, 64, 94, 656, 716, 830, 878
Hpy8I GTNNAC 4 cut(s) 527, 692, 975, 1029
Hpy99I CGWCG 5 cut(s) 119, 231, 265, 281, 331
HpyAV CCTTC 6 cut(s) 100, 425, 493, 785, 837, 915
HpyCH4III ACNGT 9 cut(s) 331, 518, 891, 931, 1036, 1178, 1352, 1381, 1522
HpyCH4IV ACGT 1 cut(s) 943
HpyCH4V TGCA 7 cut(s) 72, 100, 319, 510, 527, 631, 725
HpyF10VI GCNNNNNNNGC 5 cut(s) 66, 417, 443, 1409, 1424
HpySE526I ACGT 1 cut(s) 943
Hsp92II CATG 6 cut(s) 364, 757, 820, 833, 1120, 1291
HspAI GCGC 3 cut(s) 368, 420, 1072
KflI GGGWCCC 1 cut(s) 397
Ksp22I TGATCA 1 cut(s) 874
Kzo9I GATC 5 cut(s) 36, 846, 874, 1018, 1195
LmnI GCTCC 3 cut(s) 66, 434, 1417
Lsp1109I GCAGC 4 cut(s) 56, 737, 1415, 1436
LweI GCATC 1 cut(s) 87
MaeII ACGT 1 cut(s) 943
MaeIII GTNAC 6 cut(s) 51, 502, 676, 931, 1178, 1490
MalI GATC 5 cut(s) 38, 848, 876, 1020, 1197
MboI GATC 5 cut(s) 36, 846, 874, 1018, 1195
MboII GAAGA 6 cut(s) 7, 76, 632, 656, 893, 1376
MhlI GDGCHC 1 cut(s) 529
MlsI TGGCCA 1 cut(s) 1244
MluCI AATT 3 cut(s) 283, 335, 1447
MluNI TGGCCA 1 cut(s) 1244
MlyI GAGTC 4 cut(s) 248, 266, 928, 1432
MmeI TCCRAC 4 cut(s) 138, 222, 300, 820
MnlI CCTC 7 cut(s) 212, 398, 661, 780, 1213, 1462, 1507
Mox20I TGGCCA 1 cut(s) 1244
MscI TGGCCA 1 cut(s) 1244
MseI TTAA 5 cut(s) 635, 894, 959, 1154, 1160
MslI CAYNNNNRTG 3 cut(s) 329, 685, 929
Msp20I TGGCCA 1 cut(s) 1244
MspA1I CMGCKG 2 cut(s) 1406, 1427
MspI CCGG 6 cut(s) 144, 347, 993, 1082, 1293, 1386
MspR9I CCNGG 4 cut(s) 145, 348, 1241, 1294
Mva1269I GAATGC 1 cut(s) 1138
MvaI CCWGG 1 cut(s) 1241
MvnI CGCG 1 cut(s) 1130
MwoI GCNNNNNNNGC 5 cut(s) 66, 417, 443, 1409, 1424
NciI CCSGG 3 cut(s) 145, 348, 1294
NdeI CATATG 1 cut(s) 673
NdeII GATC 5 cut(s) 36, 846, 874, 1018, 1195
NlaIII CATG 6 cut(s) 364, 757, 820, 833, 1120, 1291
NlaIV GGNNCC 4 cut(s) 398, 399, 436, 771
NmuCI GTSAC 4 cut(s) 502, 676, 931, 1178
NsbI TGCGCA 1 cut(s) 421
NspV TTCGAA 1 cut(s) 180
OliI CACNNNNGTG 1 cut(s) 329
PagI TCATGA 1 cut(s) 829
PaqCI CACCTGC 1 cut(s) 515
PctI GAATGC 1 cut(s) 1138
PflFI GACNNNGTC 1 cut(s) 119
PfoI TCCNGGA 1 cut(s) 346
PinAI ACCGGT 1 cut(s) 992
PkrI GCNGC 5 cut(s) 71, 413, 727, 1405, 1426
PleI GAGTC 4 cut(s) 247, 265, 928, 1432
PpsI GAGTC 4 cut(s) 247, 265, 928, 1432
Ppu21I YACGTR 1 cut(s) 944
PpuMI RGGWCCY 1 cut(s) 397
Psp5II RGGWCCY 1 cut(s) 397
Psp6I CCWGG 1 cut(s) 1239
PspEI GGTNACC 1 cut(s) 502
PspGI CCWGG 1 cut(s) 1239
PspN4I GGNNCC 4 cut(s) 398, 399, 436, 771
PspPI GGNCC 3 cut(s) 132, 397, 1060
PspPPI RGGWCCY 1 cut(s) 397
PstNI CAGNNNCTG 1 cut(s) 1040
PsyI GACNNNGTC 1 cut(s) 119
PvuII CAGCTG 1 cut(s) 1427
RsaI GTAC 3 cut(s) 343, 942, 997
RsaNI GTAC 3 cut(s) 342, 941, 996
RseI CAYNNNNRTG 3 cut(s) 329, 685, 929
SaqAI TTAA 5 cut(s) 635, 894, 959, 1154, 1160
SatI GCNGC 5 cut(s) 70, 412, 726, 1404, 1425
Sau3AI GATC 5 cut(s) 36, 846, 874, 1018, 1195
Sau96I GGNCC 3 cut(s) 132, 397, 1060
SchI GAGTC 4 cut(s) 248, 266, 928, 1432
ScrFI CCNGG 4 cut(s) 145, 348, 1241, 1294
SduI GDGCHC 1 cut(s) 529
SfaNI GCATC 1 cut(s) 87
SfuI TTCGAA 1 cut(s) 180
SinI GGWCC 2 cut(s) 132, 397
SmiMI CAYNNNNRTG 3 cut(s) 329, 685, 929
Sse9I AATT 3 cut(s) 283, 335, 1447
SsiI CCGC 2 cut(s) 411, 1406
StyD4I CCNGG 4 cut(s) 143, 346, 1239, 1292
StyI CCWWGG 1 cut(s) 544
TaaI ACNGT 9 cut(s) 331, 518, 891, 931, 1036, 1178, 1352, 1381, 1522
TaiI ACGT 1 cut(s) 946
TaqI TCGA 6 cut(s) 79, 93, 180, 599, 1311, 1362
TaqII GACCGA 1 cut(s) 815
TasI AATT 3 cut(s) 283, 335, 1447
TauI GCSGC 1 cut(s) 414
Tru1I TTAA 5 cut(s) 635, 894, 959, 1154, 1160
Tru9I TTAA 5 cut(s) 635, 894, 959, 1154, 1160
TscAI CASTG 1 cut(s) 545
TseFI GTSAC 4 cut(s) 502, 676, 931, 1178
TseI GCWGC 4 cut(s) 69, 725, 1403, 1424
Tsp45I GTSAC 4 cut(s) 502, 676, 931, 1178
TspDTI ATGAA 3 cut(s) 349, 1181, 1543
TspGWI ACGGA 2 cut(s) 194, 209
TspRI CASTG 1 cut(s) 545
Tth111I GACNNNGTC 1 cut(s) 119
VneI GTGCAC 1 cut(s) 525
VpaK11BI GGWCC 2 cut(s) 132, 397
XmiI GTMKAC 1 cut(s) 1028
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.