RchiOBHm_Chr2g0098481

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0005957
Physical Location & Seq
Forward (+)
10927834 .. 10929919
2086 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47327

Sequence Viewer

Length: 912 bp
ATGGTTGAATTAGTCAGCAAATATGACCCCAAAGGGTCATCGACTAGCAAGAAAGTCTGTTGCAATAACAAGTTGTGTATGCAGCGTAATAAATGTCTGGGAGCATTCAACACTTGCCCTTATAGGGTCTCTTATGTCTCTGATCAGACTTCTACGTCTGGGATATTAGTGGAGGATGTTCTGCACTTGACAACAGAAGATAGCCATGACGAATATGTGCAAAGTGGTTCATTCCTGGATATTTCTGCTCCTAATGGTTTGTTTGGTCTTGGTGTGGAGAAGATATCTGTTCCTAGCATTTTAACCCGGGAAGGCTTTACCGCAGATTCCTTTTCCATGTGTTTTGGACATGATGGAGTTGGGAGAATCAATTTTGGTGACAAGGGAGTCCTGACCAGGAAGAGACCCCATTTAATTATAACCCTTCACAGTAATCCAGATGCAAATGCTAGTTGGATATCTGGTGTCAGTTTAACCATGAAAGGTGGAAGCCAGTTTGAAGTATACAATCCAAATATTGTTATCTCCACTGAGAGCGAGCTGGTCTATTCCCTGGCTGTTGTCAAGAGTTTGGAACTAAATATAATTGGACCTATCGATCCCTCTACAGAAAACTTCATGACAGGCTACTATGTTGTATTTGACAGAGAGAAAAAGGTTCTGGGCTGGAAGAAGTTTTACTGCTATGACACTGAGGACCATCATACATACTTACCTTTTAAACCACGCTCCTACAATGTGCCTCCTGCTTTTGCTCATGGACTGCGCAACCATTCTATTTCAGAATCCGCGAAGAAGACCAGCCAGACTTCAGCTGCTTCTCTGCCTTACTATAGTCATAGTGTCATACCTCTCTTCTGCTTTCTTTCTCTTCACTATCCTCCTCTTCCCATTACCATGGTTTTGATATGA

Protein Analysis

303

Amino Acids

33.62

Weight (kDa)

6.82

Isoelectric Point (pI)

37.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 8 - 127 8.9e-16 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 419
AasI GACNNNNNNGTC 2 cut(s) 154, 386
Acc16I TGCGCA 1 cut(s) 767
AccI GTMKAC 1 cut(s) 504
AccII CGCG 1 cut(s) 791
AciI CCGC 2 cut(s) 321, 789
AclWI GGATC 1 cut(s) 593
AcuI CTGAAG 1 cut(s) 795
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 3 cut(s) 8, 109, 500
AjnI CCWGG 3 cut(s) 234, 395, 552
AluBI AGCT 2 cut(s) 541, 815
AluI AGCT 2 cut(s) 541, 815
Alw26I GTCTC 3 cut(s) 133, 142, 397
AlwI GGATC 1 cut(s) 593
Ama87I CYCGRG 1 cut(s) 306
ApeKI GCWGC 2 cut(s) 82, 815
AspLEI GCGC 1 cut(s) 768
AspS9I GGNCC 2 cut(s) 590, 697
AsuC2I CCSGG 2 cut(s) 307, 308
AsuHPI GGTGA 1 cut(s) 389
AvaI CYCGRG 1 cut(s) 306
AvaII GGWCC 2 cut(s) 590, 697
BarI GAAGNNNNNNTAC 2 cut(s) 662, 694
BbsI GAAGAC 1 cut(s) 803
BbvI GCAGC 2 cut(s) 94, 802
BccI CCATC 2 cut(s) 347, 708
BciT130I CCWGG 3 cut(s) 236, 397, 554
BclI TGATCA 1 cut(s) 142
BcnI CCSGG 2 cut(s) 307, 308
BcoDI GTCTC 3 cut(s) 133, 142, 397
BfaI CTAG 3 cut(s) 45, 294, 450
BfmI CTRYAG 2 cut(s) 606, 832
BisI GCNGC 2 cut(s) 83, 816
BlsI GCNGC 2 cut(s) 84, 817
Bme1390I CCNGG 5 cut(s) 236, 307, 308, 397, 554
Bme18I GGWCC 2 cut(s) 590, 697
BmeT110I CYCGRG 1 cut(s) 306
BmgT120I GGNCC 2 cut(s) 590, 697
BmrFI CCNGG 5 cut(s) 236, 307, 308, 397, 554
BmsI GCATC 1 cut(s) 430
BpiI GAAGAC 1 cut(s) 803
BpuMI CCSGG 2 cut(s) 307, 308
Bsa29I ATCGAT 1 cut(s) 597
BsaI GGTCTC 2 cut(s) 133, 397
BsaJI CCNNGG 3 cut(s) 306, 552, 897
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse1I ACTGG 1 cut(s) 493
BseBI CCWGG 3 cut(s) 236, 397, 554
BseCI ATCGAT 1 cut(s) 597
BseDI CCNNGG 3 cut(s) 306, 552, 897
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMII CTCAG 2 cut(s) 522, 684
BseNI ACTGG 1 cut(s) 493
BseRI GAGGAG 1 cut(s) 873
BseXI GCAGC 2 cut(s) 94, 802
BsgI GTGCAG 1 cut(s) 167
Bsh1236I CGCG 1 cut(s) 791
BshVI ATCGAT 1 cut(s) 597
BsiHKCI CYCGRG 1 cut(s) 306
BsiSI CCGG 1 cut(s) 307
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 3 cut(s) 133, 142, 397
BsmI GAATGC 1 cut(s) 104
Bso31I GGTCTC 2 cut(s) 133, 397
BsoBI CYCGRG 1 cut(s) 306
Bsp143I GATC 2 cut(s) 142, 598
Bsp19I CCATGG 1 cut(s) 897
BspACI CCGC 2 cut(s) 321, 789
BspCNI CTCAG 2 cut(s) 523, 685
BspDI ATCGAT 1 cut(s) 597
BspFNI CGCG 1 cut(s) 791
BspHI TCATGA 1 cut(s) 618
BspPI GGATC 1 cut(s) 593
BspTNI GGTCTC 2 cut(s) 133, 397
BsrI ACTGG 1 cut(s) 493
BssECI CCNNGG 3 cut(s) 306, 552, 897
BssMI GATC 2 cut(s) 142, 598
BssNAI GTATAC 1 cut(s) 505
BssT1I CCWWGG 1 cut(s) 897
Bst1107I GTATAC 1 cut(s) 505
Bst2UI CCWGG 3 cut(s) 236, 397, 554
Bst4CI ACNGT 1 cut(s) 431
Bst6I CTCTTC 4 cut(s) 395, 860, 876, 891
BstC8I GCNNGC 1 cut(s) 539
BstDEI CTNAG 2 cut(s) 531, 693
BstDSI CCRYGG 1 cut(s) 897
BstF5I GGATG 1 cut(s) 181
BstFNI CGCG 1 cut(s) 791
BstHHI GCGC 1 cut(s) 768
BstKTI GATC 2 cut(s) 145, 601
BstMAI GTCTC 3 cut(s) 133, 142, 397
BstMBI GATC 2 cut(s) 142, 598
BstNI CCWGG 3 cut(s) 236, 397, 554
BstSCI CCNGG 5 cut(s) 234, 305, 306, 395, 552
BstSFI CTRYAG 2 cut(s) 606, 832
BstUI CGCG 1 cut(s) 791
BstV1I GCAGC 2 cut(s) 94, 802
BstV2I GAAGAC 1 cut(s) 803
BstXI CCANNNNNNTGG 1 cut(s) 898
BstZ17I GTATAC 1 cut(s) 505
Bsu15I ATCGAT 1 cut(s) 597
BsuTUI ATCGAT 1 cut(s) 597
BtgI CCRYGG 1 cut(s) 897
BtsCI GGATG 1 cut(s) 181
BtsIMutI CAGTG 2 cut(s) 528, 690
Cac8I GCNNGC 1 cut(s) 539
CciI TCATGA 1 cut(s) 618
CfoI GCGC 1 cut(s) 768
Cfr13I GGNCC 2 cut(s) 590, 697
Cfr9I CCCGGG 1 cut(s) 306
ClaI ATCGAT 1 cut(s) 597
CviAII CATG 7 cut(s) 206, 337, 350, 478, 619, 758, 898
CviJI RGCY 9 cut(s) 204, 315, 492, 541, 557, 627, 666, 804, 815
CviKI_1 RGCY 9 cut(s) 204, 315, 492, 541, 557, 627, 666, 804, 815
DdeI CTNAG 2 cut(s) 531, 693
DpnI GATC 2 cut(s) 144, 600
DpnII GATC 2 cut(s) 142, 598
DraI TTTAAA 1 cut(s) 721
DrdI GACNNNNNNGTC 2 cut(s) 154, 386
DseDI GACNNNNNNGTC 2 cut(s) 154, 386
Eam1104I CTCTTC 4 cut(s) 395, 860, 876, 891
EarI CTCTTC 4 cut(s) 395, 860, 876, 891
Eco130I CCWWGG 1 cut(s) 897
Eco31I GGTCTC 2 cut(s) 133, 397
Eco32I GATATC 2 cut(s) 285, 459
Eco47I GGWCC 2 cut(s) 590, 697
Eco57I CTGAAG 1 cut(s) 795
Eco88I CYCGRG 1 cut(s) 306
EcoRII CCWGG 3 cut(s) 234, 395, 552
EcoRV GATATC 2 cut(s) 285, 459
EcoT14I CCWWGG 1 cut(s) 897
ErhI CCWWGG 1 cut(s) 897
FaeI CATG 7 cut(s) 209, 340, 353, 481, 622, 761, 901
FatI CATG 7 cut(s) 205, 336, 349, 477, 618, 757, 897
FbaI TGATCA 1 cut(s) 142
FblI GTMKAC 1 cut(s) 504
Fnu4HI GCNGC 2 cut(s) 83, 816
FokI GGATG 1 cut(s) 188
Fsp4HI GCNGC 2 cut(s) 83, 816
FspBI CTAG 3 cut(s) 45, 294, 450
FspI TGCGCA 1 cut(s) 767
GlaI GCGC 1 cut(s) 767
GluI GCNGC 2 cut(s) 83, 816
HapII CCGG 1 cut(s) 307
HhaI GCGC 1 cut(s) 768
Hin1II CATG 7 cut(s) 209, 340, 353, 481, 622, 761, 901
Hin6I GCGC 1 cut(s) 766
HinP1I GCGC 1 cut(s) 766
HinfI GANTC 4 cut(s) 326, 366, 387, 785
HpaII CCGG 1 cut(s) 307
HphI GGTGA 1 cut(s) 389
Hpy166II GTNNAC 1 cut(s) 505
Hpy188I TCNGA 3 cut(s) 142, 147, 784
Hpy188III TCNNGA 4 cut(s) 391, 437, 565, 619
Hpy8I GTNNAC 1 cut(s) 505
HpyAV CCTTC 2 cut(s) 305, 434
HpyCH4III ACNGT 1 cut(s) 431
HpyCH4IV ACGT 1 cut(s) 155
HpyCH4V TGCA 5 cut(s) 63, 82, 184, 220, 443
HpyF3I CTNAG 2 cut(s) 531, 693
HpySE526I ACGT 1 cut(s) 155
Hsp92II CATG 7 cut(s) 209, 340, 353, 481, 622, 761, 901
HspAI GCGC 1 cut(s) 766
Ksp22I TGATCA 1 cut(s) 142
Kzo9I GATC 2 cut(s) 142, 598
LmnI GCTCC 3 cut(s) 101, 253, 734
Lsp1109I GCAGC 2 cut(s) 94, 802
LweI GCATC 1 cut(s) 430
MaeI CTAG 3 cut(s) 45, 294, 450
MaeII ACGT 1 cut(s) 155
MaeIII GTNAC 1 cut(s) 377
MalI GATC 2 cut(s) 144, 600
MboI GATC 2 cut(s) 142, 598
MboII GAAGA 9 cut(s) 209, 292, 412, 682, 805, 808, 847, 863, 878
MluCI AATT 4 cut(s) 8, 370, 414, 585
MlyI GAGTC 1 cut(s) 396
MmeI TCCRAC 1 cut(s) 434
MnlI CCTC 7 cut(s) 166, 613, 688, 753, 861, 891, 894
MseI TTAA 4 cut(s) 302, 413, 473, 720
MslI CAYNNNNRTG 1 cut(s) 896
MspA1I CMGCKG 1 cut(s) 815
MspI CCGG 1 cut(s) 307
MspR9I CCNGG 5 cut(s) 236, 307, 308, 397, 554
Mva1269I GAATGC 1 cut(s) 104
MvaI CCWGG 3 cut(s) 236, 397, 554
MvnI CGCG 1 cut(s) 791
NciI CCSGG 2 cut(s) 307, 308
NcoI CCATGG 1 cut(s) 897
NdeII GATC 2 cut(s) 142, 598
NlaIII CATG 7 cut(s) 209, 340, 353, 481, 622, 761, 901
NmuCI GTSAC 1 cut(s) 377
NsbI TGCGCA 1 cut(s) 767
PagI TCATGA 1 cut(s) 618
PctI GAATGC 1 cut(s) 104
PfeI GAWTC 3 cut(s) 326, 366, 785
PfoI TCCNGGA 1 cut(s) 234
PkrI GCNGC 2 cut(s) 84, 817
PleI GAGTC 1 cut(s) 395
PpsI GAGTC 1 cut(s) 395
PsiI TTATAA 1 cut(s) 419
Psp6I CCWGG 3 cut(s) 234, 395, 552
PspGI CCWGG 3 cut(s) 234, 395, 552
PspPI GGNCC 2 cut(s) 590, 697
PvuII CAGCTG 1 cut(s) 815
RseI CAYNNNNRTG 1 cut(s) 896
SaqAI TTAA 4 cut(s) 302, 413, 473, 720
SatI GCNGC 2 cut(s) 83, 816
Sau3AI GATC 2 cut(s) 142, 598
Sau96I GGNCC 2 cut(s) 590, 697
SchI GAGTC 1 cut(s) 396
ScrFI CCNGG 5 cut(s) 236, 307, 308, 397, 554
SetI ASST 8 cut(s) 158, 487, 543, 595, 660, 718, 817, 853
SfaNI GCATC 1 cut(s) 430
SfcI CTRYAG 2 cut(s) 606, 832
SinI GGWCC 2 cut(s) 590, 697
SmaI CCCGGG 1 cut(s) 308
SmiMI CAYNNNNRTG 1 cut(s) 896
Sse9I AATT 4 cut(s) 8, 370, 414, 585
SsiI CCGC 2 cut(s) 321, 789
SspI AATATT 1 cut(s) 517
SspMI CTAG 3 cut(s) 45, 294, 450
StyD4I CCNGG 5 cut(s) 234, 305, 306, 395, 552
StyI CCWWGG 1 cut(s) 897
TaaI ACNGT 1 cut(s) 431
TaiI ACGT 1 cut(s) 158
TaqI TCGA 2 cut(s) 41, 597
TasI AATT 4 cut(s) 8, 370, 414, 585
TfiI GAWTC 3 cut(s) 326, 366, 785
Tru1I TTAA 4 cut(s) 302, 413, 473, 720
Tru9I TTAA 4 cut(s) 302, 413, 473, 720
TscAI CASTG 2 cut(s) 535, 697
TseFI GTSAC 1 cut(s) 377
TseI GCWGC 2 cut(s) 82, 815
Tsp45I GTSAC 1 cut(s) 377
TspDTI ATGAA 3 cut(s) 219, 494, 607
TspMI CCCGGG 1 cut(s) 306
TspRI CASTG 2 cut(s) 535, 697
VpaK11BI GGWCC 2 cut(s) 590, 697
XmaI CCCGGG 1 cut(s) 306
XmiI GTMKAC 1 cut(s) 504
XspI CTAG 3 cut(s) 45, 294, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.