RLG00000016803

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
10145348 .. 10148347
3000 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016803

Sequence Viewer

Length: 1560 bp
ATGCCTACTCTTCGTAAGCTCGTCTCCATCTCCCTCGTTTTCCCATCAATCTTCTTGACCCTTCTTCTTCTTCTTCTTCTTCCAAGCTGCCACGGCCGCGTCTTCAGCTTCGAGATGCACCACCGCTTCTCCGACCCAGTCAAGCAGTGGTCGGAGGCCGCCGGAAAGCTCTCTCCGGTTGCCGCCACCAACCTCCCAGAGAAGGGCAGCTTCGAGTACTACGCCGAACTCGCCAACCGCGACCGCCTCCTCCGCGGCCGCAAGCTCGTCGAGTCCACCGACACCCTCGCTTTCTCCGACGGCAACTCCACTTTTCAGATCACCTCTTTGGGATATTTGCATTACACGACGGTGCAATTGGGGACGCCGGGAATGAAGTTTATGGTGGCGCTTGATACCGGGAGTGACCTGTTTTGGGTGCCTTGTGAAGGAACAGCTTATGCTCCTAATTTTGAGGTCAGCAAATATGACCCGAAGGGGTCATCGACTAGCAAGAAAGTCCGTTGCAACAACAGGTTGTGTATGCAGCGTAATAAATGTCTGGGAGCATTCAACACTTGCCCTTATAGGGTCTCTTATGTCTCTGATCAAACTTCTACGTCTGGGATATTGGTAGAGGATGTTCTGCACTTAACAACAGAAGATAGTCATCATGAATATGTTGAGGCATACATTACCTTTGGTTGTGGCCAGGTGCAAAGTGGATCATTCCTGGATATTGCTGCTCCTAATGGTTTGTTTGGTCTTGGTATGGAGAAGATATCTGTTCCTAGCATTTTATCCCGGGAAGGCTTTACCGCAGATTCCTTTTCCATGTGTTTTGGACATGATGGAGTTGGGAGAATCAATTTTGGTGACAAGGGGAGTCCTGACCAGGAAGAGACCCCATTTAATTATAACCCTTCACATCCAACCTACAACATCAGTGTAACTCAAATTAGAGTGGGGACAGATATTATGGACATTGATTTCACTGCTCTTTTTGATTCTGGGACTTCTTTCACATATTTGGATGACCCAACTTATACAAGGATTTCAGAGAGTTTCAATTCACAAGCTCGAGATAAGCGTCGTCCACCTGACTCAAGGATTCCATTTGAATATTGTTATGATATGAGTCCAGATGCAAATGCTAGTTGGATATCTGGTGTCAGTTTAACCATGAAAGGTGGAAGCCAGTTTGAAGTATATAATCCAATCATTGTTATCTCCACTCAGAGCGAGCTGGTCTATTGCCTGGCTGTTGTCAAGAGTTTGGAACTAAATATAATTGGACAAAACTTCATGACAGGCTACCATGTTGTATTTGACAGAGAGAAAAAGGTTTTGGGCTGGAAGAAGTTTGACTGCTATGACACTGAGGACCATCATACTTACTTACCTTTCAAACCGCGCTCCTACCATGTGCCTCCTGCTTTTGCTCATGGACTACGCAACCATTCTATTTCAGAATCAGCGAAAAAGAACAGCCAGACTTCAGCTGCCTCTCTGCCTTACTATAGTCATACTTCTCTTCAGACGTGCTTTGTATTCACTATCCTCCTCTTCCTCTTACCGTAA

Protein Analysis

520

Amino Acids

58.04

Weight (kDa)

6.06

Isoelectric Point (pI)

40.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 115 - 286 1e-35 Xylanase inhibitor N-terminal
Asp PF00026 115 - 444 5.4e-24 Eukaryotic aspartyl protease
TAXi_C PF14541 306 - 446 1.2e-16 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 897
AccB1I GGYRCC 1 cut(s) 418
AccII CGCG 4 cut(s) 99, 240, 255, 1393
AclWI GGATC 1 cut(s) 712
AcoI YGGCCR 3 cut(s) 94, 256, 688
AcuI CTGAAG 3 cut(s) 88, 1461, 1499
AcyI GRCGYC 1 cut(s) 365
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 5 cut(s) 202, 203, 415, 428, 568
AgsI TTSAA 5 cut(s) 553, 1048, 1100, 1184, 1387
AjiI CACGTC 1 cut(s) 1521
AjnI CCWGG 4 cut(s) 690, 711, 873, 1236
AjuI GAANNNNNNNTTGG 2 cut(s) 1310, 1342
AleI CACNNNNGTG 1 cut(s) 350
Alw26I GTCTC 4 cut(s) 28, 577, 586, 875
AlwI GGATC 1 cut(s) 712
Ama87I CYCGRG 2 cut(s) 783, 1059
AoxI GGCC 4 cut(s) 94, 156, 256, 688
ApeKI GCWGC 5 cut(s) 87, 207, 526, 722, 1481
AspLEI GCGC 2 cut(s) 391, 1395
AspS9I GGNCC 1 cut(s) 1363
AsuC2I CCSGG 4 cut(s) 369, 400, 784, 785
AsuHPI GGTGA 2 cut(s) 313, 866
AvaI CYCGRG 2 cut(s) 783, 1059
AvaII GGWCC 1 cut(s) 1363
BalI TGGCCA 1 cut(s) 690
BanI GGYRCC 1 cut(s) 418
BbsI GAAGAC 1 cut(s) 94
BbvI GCAGC 5 cut(s) 74, 219, 538, 709, 1468
BccI CCATC 4 cut(s) 35, 52, 824, 1374
BceAI ACGGC 2 cut(s) 109, 316
BcgI CGANNNNNNTGC 2 cut(s) 250, 284
BciT130I CCWGG 4 cut(s) 692, 713, 875, 1238
BclI TGATCA 1 cut(s) 586
BcnI CCSGG 4 cut(s) 369, 400, 784, 785
BcoDI GTCTC 4 cut(s) 28, 577, 586, 875
BfaI CTAG 3 cut(s) 489, 771, 1134
BfmI CTRYAG 1 cut(s) 1498
BfoI RGCGCY 1 cut(s) 392
BmcAI AGTACT 1 cut(s) 218
Bme1390I CCNGG 8 cut(s) 369, 400, 692, 713, 784, 785, 875, 1238
Bme18I GGWCC 1 cut(s) 1363
BmeT110I CYCGRG 2 cut(s) 783, 1059
BmgBI CACGTC 1 cut(s) 1521
BmgT120I GGNCC 1 cut(s) 1363
BmiI GGNNCC 1 cut(s) 420
BmrFI CCNGG 8 cut(s) 369, 400, 692, 713, 784, 785, 875, 1238
BmrI ACTGGG 1 cut(s) 131
BmsI GCATC 2 cut(s) 105, 1114
BmuI ACTGGG 1 cut(s) 131
BpiI GAAGAC 1 cut(s) 94
BpuEI CTTGAG 1 cut(s) 1069
BpuMI CCSGG 4 cut(s) 369, 400, 784, 785
BsaBI GATNNNNATC 1 cut(s) 648
BsaHI GRCGYC 1 cut(s) 365
BsaI GGTCTC 2 cut(s) 577, 875
BsaJI CCNNGG 3 cut(s) 91, 253, 783
BsaWI WCCGGW 1 cut(s) 175
BsaXI ACNNNNNCTCC 4 cut(s) 113, 143, 290, 320
Bsc4I CCNNNNNNNGG 5 cut(s) 202, 203, 415, 428, 568
Bse1I ACTGG 2 cut(s) 137, 1177
Bse8I GATNNNNATC 1 cut(s) 648
BseBI CCWGG 4 cut(s) 692, 713, 875, 1238
BseDI CCNNGG 3 cut(s) 91, 253, 783
BseGI GGATG 3 cut(s) 625, 907, 1018
BseJI GATNNNNATC 1 cut(s) 648
BseLI CCNNNNNNNGG 5 cut(s) 202, 203, 415, 428, 568
BseMII CTCAG 2 cut(s) 1229, 1350
BseNI ACTGG 2 cut(s) 137, 1177
BseRI GAGGAG 2 cut(s) 239, 1532
BseX3I CGGCCG 2 cut(s) 94, 256
BseXI GCAGC 5 cut(s) 74, 219, 538, 709, 1468
BsgI GTGCAG 1 cut(s) 611
Bsh1236I CGCG 4 cut(s) 99, 240, 255, 1393
Bsh1285I CGRYCG 3 cut(s) 97, 244, 259
BshFI GGCC 4 cut(s) 96, 158, 258, 690
BshNI GGYRCC 1 cut(s) 418
BsiEI CGRYCG 3 cut(s) 97, 244, 259
BsiHKCI CYCGRG 2 cut(s) 783, 1059
BsiSI CCGG 5 cut(s) 162, 176, 368, 399, 784
BslFI GGGAC 3 cut(s) 376, 961, 1006
BslI CCNNNNNNNGG 5 cut(s) 202, 203, 415, 428, 568
BsmAI GTCTC 4 cut(s) 28, 577, 586, 875
BsmBI CGTCTC 1 cut(s) 28
BsmFI GGGAC 3 cut(s) 376, 961, 1006
BsmI GAATGC 1 cut(s) 548
BsnI GGCC 4 cut(s) 96, 158, 258, 690
Bso31I GGTCTC 2 cut(s) 577, 875
BsoBI CYCGRG 2 cut(s) 783, 1059
Bsp143I GATC 3 cut(s) 318, 586, 704
BspANI GGCC 4 cut(s) 96, 158, 258, 690
BspCNI CTCAG 2 cut(s) 1228, 1351
BspFNI CGCG 4 cut(s) 99, 240, 255, 1393
BspHI TCATGA 2 cut(s) 652, 1284
BspLI GGNNCC 1 cut(s) 420
BspPI GGATC 1 cut(s) 712
BspT107I GGYRCC 1 cut(s) 418
BspTNI GGTCTC 2 cut(s) 577, 875
BsrI ACTGG 2 cut(s) 137, 1177
BssECI CCNNGG 3 cut(s) 91, 253, 783
BssMI GATC 3 cut(s) 318, 586, 704
BssNI GRCGYC 1 cut(s) 365
Bst2UI CCWGG 4 cut(s) 692, 713, 875, 1238
Bst4CI ACNGT 2 cut(s) 352, 1557
Bst6I CTCTTC 4 cut(s) 15, 873, 1518, 1550
BstACI GRCGYC 1 cut(s) 365
BstC8I GCNNGC 2 cut(s) 263, 1223
BstDEI CTNAG 2 cut(s) 1215, 1359
BstDSI CCRYGG 2 cut(s) 91, 253
BstENI CCTNNNNNAGG 1 cut(s) 426
BstF5I GGATG 3 cut(s) 625, 907, 1018
BstFNI CGCG 4 cut(s) 99, 240, 255, 1393
BstH2I RGCGCY 1 cut(s) 392
BstHHI GCGC 2 cut(s) 391, 1395
BstKTI GATC 3 cut(s) 321, 589, 707
BstMAI GTCTC 4 cut(s) 28, 577, 586, 875
BstMBI GATC 3 cut(s) 318, 586, 704
BstMCI CGRYCG 3 cut(s) 97, 244, 259
BstMWI GCNNNNNNNGC 5 cut(s) 93, 96, 105, 230, 252
BstNI CCWGG 4 cut(s) 692, 713, 875, 1238
BstSCI CCNGG 8 cut(s) 367, 398, 690, 711, 782, 783, 873, 1236
BstSFI CTRYAG 1 cut(s) 1498
BstUI CGCG 4 cut(s) 99, 240, 255, 1393
BstV1I GCAGC 5 cut(s) 74, 219, 538, 709, 1468
BstV2I GAAGAC 1 cut(s) 94
BstZI CGGCCG 2 cut(s) 94, 256
BsuRI GGCC 4 cut(s) 96, 158, 258, 690
BtgI CCRYGG 2 cut(s) 91, 253
BtrI CACGTC 1 cut(s) 1521
BtsCI GGATG 3 cut(s) 625, 907, 1018
BtsI GCAGTG 2 cut(s) 152, 972
BtsIMutI CAGTG 4 cut(s) 152, 931, 972, 1356
Cac8I GCNNGC 2 cut(s) 263, 1223
CciI TCATGA 2 cut(s) 652, 1284
CciNI GCGGCCGC 1 cut(s) 256
CfoI GCGC 2 cut(s) 391, 1395
Cfr13I GGNCC 1 cut(s) 1363
Cfr42I CCGCGG 1 cut(s) 256
Cfr9I CCCGGG 1 cut(s) 783
CseI GACGC 3 cut(s) 88, 373, 1058
Csp6I GTAC 1 cut(s) 217
CviAII CATG 8 cut(s) 653, 814, 827, 1162, 1285, 1298, 1403, 1424
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 2 cut(s) 1215, 1359
DpnI GATC 3 cut(s) 320, 588, 706
DpnII GATC 3 cut(s) 318, 586, 704
EaeI YGGCCR 3 cut(s) 94, 256, 688
EagI CGGCCG 2 cut(s) 94, 256
Eam1104I CTCTTC 4 cut(s) 15, 873, 1518, 1550
EarI CTCTTC 4 cut(s) 15, 873, 1518, 1550
EclXI CGGCCG 2 cut(s) 94, 256
Eco31I GGTCTC 2 cut(s) 577, 875
Eco32I GATATC 2 cut(s) 762, 1143
Eco47I GGWCC 1 cut(s) 1363
Eco52I CGGCCG 2 cut(s) 94, 256
Eco57I CTGAAG 3 cut(s) 88, 1461, 1499
Eco88I CYCGRG 2 cut(s) 783, 1059
EcoNI CCTNNNNNAGG 1 cut(s) 426
EcoRII CCWGG 4 cut(s) 690, 711, 873, 1236
EcoRV GATATC 2 cut(s) 762, 1143
Esp3I CGTCTC 1 cut(s) 28
FaeI CATG 8 cut(s) 656, 817, 830, 1165, 1288, 1301, 1406, 1427
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FaqI GGGAC 3 cut(s) 376, 961, 1006
FatI CATG 8 cut(s) 652, 813, 826, 1161, 1284, 1297, 1402, 1423
FbaI TGATCA 1 cut(s) 586
FokI GGATG 3 cut(s) 632, 894, 1025
FspBI CTAG 3 cut(s) 489, 771, 1134
GlaI GCGC 2 cut(s) 390, 1394
HaeII RGCGCY 1 cut(s) 392
HaeIII GGCC 4 cut(s) 96, 158, 258, 690
HapII CCGG 5 cut(s) 162, 176, 368, 399, 784
HgaI GACGC 3 cut(s) 88, 373, 1058
HhaI GCGC 2 cut(s) 391, 1395
Hin1I GRCGYC 1 cut(s) 365
Hin1II CATG 8 cut(s) 656, 817, 830, 1165, 1288, 1301, 1406, 1427
Hin6I GCGC 2 cut(s) 389, 1393
HinP1I GCGC 2 cut(s) 389, 1393
HinfI GANTC 9 cut(s) 272, 803, 843, 865, 986, 1082, 1090, 1117, 1451
HpaII CCGG 5 cut(s) 162, 176, 368, 399, 784
HphI GGTGA 2 cut(s) 313, 866
Hpy166II GTNNAC 2 cut(s) 276, 1076
Hpy188I TCNGA 9 cut(s) 133, 154, 298, 318, 586, 1039, 1218, 1450, 1518
Hpy188III TCNNGA 8 cut(s) 55, 112, 653, 869, 1061, 1121, 1249, 1285
Hpy8I GTNNAC 2 cut(s) 276, 1076
Hpy99I CGWCG 4 cut(s) 272, 302, 352, 1074
HpyAV CCTTC 6 cut(s) 71, 196, 422, 469, 782, 912
HpyCH4III ACNGT 2 cut(s) 352, 1557
HpyCH4IV ACGT 2 cut(s) 599, 1520
HpyCH4V TGCA 8 cut(s) 118, 340, 355, 507, 526, 628, 697, 1127
HpyF10VI GCNNNNNNNGC 5 cut(s) 93, 96, 105, 230, 252
HpyF3I CTNAG 2 cut(s) 1215, 1359
HpySE526I ACGT 2 cut(s) 599, 1520
Hsp92I GRCGYC 1 cut(s) 365
Hsp92II CATG 8 cut(s) 656, 817, 830, 1165, 1288, 1301, 1406, 1427
HspAI GCGC 2 cut(s) 389, 1393
Ksp22I TGATCA 1 cut(s) 586
KspI CCGCGG 1 cut(s) 256
Kzo9I GATC 3 cut(s) 318, 586, 704
LmnI GCTCC 4 cut(s) 448, 545, 730, 1400
Lsp1109I GCAGC 5 cut(s) 74, 219, 538, 709, 1468
LweI GCATC 2 cut(s) 105, 1114
MaeI CTAG 3 cut(s) 489, 771, 1134
MaeII ACGT 2 cut(s) 599, 1520
MaeIII GTNAC 3 cut(s) 404, 854, 928
MalI GATC 3 cut(s) 320, 588, 706
MboI GATC 3 cut(s) 318, 586, 704
MfeI CAATTG 1 cut(s) 356
MlsI TGGCCA 1 cut(s) 690
MluCI AATT 7 cut(s) 356, 448, 847, 892, 936, 1048, 1269
MluNI TGGCCA 1 cut(s) 690
MlyI GAGTC 4 cut(s) 281, 874, 1076, 1126
MmeI TCCRAC 5 cut(s) 132, 156, 321, 935, 1118
Mox20I TGGCCA 1 cut(s) 690
MscI TGGCCA 1 cut(s) 690
MseI TTAA 3 cut(s) 632, 891, 1157
MslI CAYNNNNRTG 2 cut(s) 350, 657
Msp20I TGGCCA 1 cut(s) 690
MspA1I CMGCKG 2 cut(s) 255, 1481
MspI CCGG 5 cut(s) 162, 176, 368, 399, 784
MspR9I CCNGG 8 cut(s) 369, 400, 692, 713, 784, 785, 875, 1238
MunI CAATTG 1 cut(s) 356
Mva1269I GAATGC 1 cut(s) 548
MvaI CCWGG 4 cut(s) 692, 713, 875, 1238
MvnI CGCG 4 cut(s) 99, 240, 255, 1393
MwoI GCNNNNNNNGC 5 cut(s) 93, 96, 105, 230, 252
NciI CCSGG 4 cut(s) 369, 400, 784, 785
NdeII GATC 3 cut(s) 318, 586, 704
NlaIII CATG 8 cut(s) 656, 817, 830, 1165, 1288, 1301, 1406, 1427
NlaIV GGNNCC 1 cut(s) 420
NmuCI GTSAC 2 cut(s) 404, 854
NotI GCGGCCGC 1 cut(s) 256
OliI CACNNNNGTG 1 cut(s) 350
PaeR7I CTCGAG 1 cut(s) 1059
PagI TCATGA 2 cut(s) 652, 1284
PcsI WCGNNNNNNNCGW 4 cut(s) 237, 276, 294, 1066
PctI GAATGC 1 cut(s) 548
PfeI GAWTC 5 cut(s) 803, 843, 986, 1090, 1451
PflFI GACNNNGTC 1 cut(s) 137
PfoI TCCNGGA 1 cut(s) 711
PleI GAGTC 4 cut(s) 280, 873, 1076, 1125
PpsI GAGTC 4 cut(s) 280, 873, 1076, 1125
PsiI TTATAA 1 cut(s) 897
Psp6I CCWGG 4 cut(s) 690, 711, 873, 1236
PspGI CCWGG 4 cut(s) 690, 711, 873, 1236
PspN4I GGNNCC 1 cut(s) 420
PspPI GGNCC 1 cut(s) 1363
PsrI GAACNNNNNNTAC 2 cut(s) 606, 638
PsyI GACNNNGTC 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 1481
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 2 cut(s) 350, 657
SacII CCGCGG 1 cut(s) 256
SaqAI TTAA 3 cut(s) 632, 891, 1157
Sau3AI GATC 3 cut(s) 318, 586, 704
Sau96I GGNCC 1 cut(s) 1363
ScaI AGTACT 1 cut(s) 218
SchI GAGTC 4 cut(s) 281, 874, 1076, 1126
ScrFI CCNGG 8 cut(s) 369, 400, 692, 713, 784, 785, 875, 1238
SfaNI GCATC 2 cut(s) 105, 1114
SfcI CTRYAG 1 cut(s) 1498
Sfr274I CTCGAG 1 cut(s) 1059
Sfr303I CCGCGG 1 cut(s) 256
SgrBI CCGCGG 1 cut(s) 256
SinI GGWCC 1 cut(s) 1363
SlaI CTCGAG 1 cut(s) 1059
SmaI CCCGGG 1 cut(s) 785
SmiMI CAYNNNNRTG 2 cut(s) 350, 657
SmlI CTYRAG 2 cut(s) 1059, 1084
SmoI CTYRAG 2 cut(s) 1059, 1084
Sse9I AATT 7 cut(s) 356, 448, 847, 892, 936, 1048, 1269
SspI AATATT 1 cut(s) 1103
SspMI CTAG 3 cut(s) 489, 771, 1134
StyD4I CCNGG 8 cut(s) 367, 398, 690, 711, 782, 783, 873, 1236
TaaI ACNGT 2 cut(s) 352, 1557
TaiI ACGT 2 cut(s) 602, 1523
TaqI TCGA 5 cut(s) 111, 213, 270, 485, 1060
TasI AATT 7 cut(s) 356, 448, 847, 892, 936, 1048, 1269
TatI WGTACW 1 cut(s) 216
TauI GCSGC 5 cut(s) 99, 161, 185, 258, 261
TfiI GAWTC 5 cut(s) 803, 843, 986, 1090, 1451
Tru1I TTAA 3 cut(s) 632, 891, 1157
Tru9I TTAA 3 cut(s) 632, 891, 1157
TscAI CASTG 4 cut(s) 152, 931, 979, 1363
TseFI GTSAC 2 cut(s) 404, 854
TseI GCWGC 5 cut(s) 87, 207, 526, 722, 1481
Tsp45I GTSAC 2 cut(s) 404, 854
TspDTI ATGAA 4 cut(s) 389, 669, 1178, 1273
TspGWI ACGGA 1 cut(s) 491
TspMI CCCGGG 1 cut(s) 783
TspRI CASTG 4 cut(s) 152, 931, 979, 1363
Tth111I GACNNNGTC 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 1363
XagI CCTNNNNNAGG 1 cut(s) 426
XcmI CCANNNNNNNNNTGG 2 cut(s) 144, 698
XhoI CTCGAG 1 cut(s) 1059
XmaI CCCGGG 1 cut(s) 783
XspI CTAG 3 cut(s) 489, 771, 1134
ZrmI AGTACT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.