Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005957

Physical Location & Seq

Genomic Coordinates Reverse (-)

5864535 .. 5867480

Gene Structure 2946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0073600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2946 bp

ATGGAATGTGACCTAATTGCTCTGGGAATGTCACCGGGTTTTCGAGGCCTGTTACTGCCAATTTGCCAAAGACCCACTACTTATTCGGTTCGATTGCATAGCAAGATTAGTCCCAGTGTCAGGTCATTGGTGCTGTCTAGATTGAAGTCTTGTTCTTGTGCTGCTGTGAATGTTGTTGAGTCGAGTCCAATCAGTGATTTGGCTCAAAACCATACCCGAAAATTGGAGACTCAAGTAGGATTAGATAATGGGAATGTGGGTGATCAGGAAATAGTAGGAGATGATGTGAAAGCCAGGCCTTTCGTTTGGAATGGGAAGAAGAGGCTTATACGGTATTCTGGGATGCTTCGTACCTGTGCTTCACAAGGGTCTTTGAATGAGGGGAAGGCTATTCATGGGCAGGTGATAAAGAATGGGATACACCCTGATTCGCATTTGTGGGTTTCGTTGGTTAATGTTTACTCGAAATGTGGGGATTCTGTGTATGCCCGCAAAGTGCTTGGTGAGATGCCTGAACGAGATGTTGTGTCGTGGACTACTTTGATTCATGGGTTTGTGGTCAAAGGTTCTGGTGTTGATGCTGTTAATTTGTTCTGTGAGATGAAGAAAGATGGTACAAGAGCAAATGACTTTTCGTTGGCTACTGGTTTGAAAGCGTGTTCTTTGTGCTTAGATTTAAGCTTTGGAAAGCAGTTGCATGCTGAAGCAGTGAAAGCGGGGTTCTTTTCCGATGGTTTTGTTGGATCTGCTCTCGTTGGTCTTTATGCAAAATGTGGTGAGATGGAACTTGCCAATAGAGTGTTATTTTGTATGCCTGAGCAGAATGTTGTATCATGGAATGCCCTGCTAAATGGGTATGCTCAGGAAGGTGATGGAAATCAAGTTCTGAAATTGTTTTGCAAAATGACGGAATCAGATATGAGGTTAAGTAAGTTCACCTTGTCTACTGTCCTTAAAGGTTGTGCAAACATAGAAAATTTGAGAGTAGGTCGGGTTGTGCATTCTTTGGTTGTCAAAGTTGGGTTTGAGGTTGATGAATTCCTGGGTTGCAGTCTTGTTGATATGTATTCTAAGTGTCGAATGGCAATTGATGCAGTAAAAGTATTCAGGACGATTAAAGATCCTGATGTAGTGGCCTGGAGCGCTATTATCACTTGCCTTGATCAACAAAGGCAATACCAGGAAATGGCTCGACTATTTCGTTCAATGATAAACACAGGCATCTCACCGAACCAATTTACCCTTTCTAGTATTATTAGTGCTGCCACTGATCTTGGAGACCTCCATTTTGGTGAGAGCATCCATGGTCTTATATGGAAATATGGCTATGAATCTGATCTTCCAGTCAGCAACGCTCTAATCACAATGTATATGAAAATTGGATGTGTGAGAAATGGTGCTCAGGTTTTTGAGGCAATGACAGAACATGATCTGATTTCATGGAATGCCCTTCTATCTGGAGCACATGACCTAGGTCCAAGAGTATTCCACCAAATGCTTTCTGAAGGTTGCAAGCCCAACATGTACTCCTTCATCAGTATTTTAAGATCCTGTTCTAGCCTCTTGGATGCAGACCTCGGGAAACAAGTGCATGCCCATATTGTCAAAACAAGCCTCCATGATAATGACTTTGTTGGGACGGCTCTCATTGACATGTATGCCAAAAGCAGGTTCTTAGATGATGCTGTTATAGCTTTCAGTAGATTGAGTAATCGAGATCTTTTCACTTGGACAGTCATCATTACTGGTTATGTACAAACTGATCAAGCAGAGAAAGCTGTTGCTTGTTTCAGTCAGATGCAACAAGAAGGAGTGAAGCCAAACGAGTTCACTCTTGCTGGCTGTTTGAGTGCTTGCTCCCGTATAGCCATGCTGGAAAATGGGCGGCAGCTCCATTCGATGGCAATTAAGGCTGGGCATTTAGAAGATTTGTTTGTTGGTAGTGCACTCGTTGATATGTATGCAAAATGCGGATGCATAGCTGATGCTGAGGGTACCTTTGAGGGTTTGGCTTCCAGGGATACAGTCTCATGGAACATCATGATTTGTGGATACTCTCAATATGGTCAAGGAGAGAAGGCTCTGGAAGCCTTTTCGACAATGTTAGACGAAGGCGTCATGCCAGATGAGATCACTTTCATAGGTGTTCTTTCAGCTTGCAGTCACCTGGGTTTGGTCGAAGAAGGGAAAAAGCACTTTGACTCGCTGAGAAAAATTTTCCAGATCACTCCTACCATCGAGCATTATGCTTGTATGGTTGATATTCTTGGTAGTGCTGGGAAATTTGATGAGGTTGAAAGCTTTATTGTGACAATGAAACTGACACCGTATGCCATTATTTGGGAGACTGTTCTTGGAGCTTGTAAGAAGTATGGAAATGTGGATTTTGGTGAAACTGCTGCAGGAAAGCTTTTTGAGCTTGAACCTGAGATGGATTCGACTTATATATTGCTGTCAAATATCTATGCAAATAAAGGTAGATGGGATGATGTTAGAAAAGTGAGGACTTTAATGTCCAGCCAGGGTATTAAAAAGGAGCCTGGTTGTAGCTGGGTTGAAGTTGATGGACAAGTCCACACTTTTGTCTCTCATGATGGTTCGCATCCAAGAATCAAGGAAATCCATCTGAAATTGGAGGAACTAGGTCAAAAGCTGACTTCAGTTGGTTATATACCAGAAACTGAGAATGTTCTTCACAATATCACTGAGCAAGAAAAAGAGGAACATCTCCAATATCATAGTGAAAGGTTGGCTCTTGCGTATGCCCTTCTAAGCACCGATCCTGTAAAAACTATTCGTATTTTCAAAAATCTTCGCATATGTGGGGACTGCCATGATGTTATGAAGCTCATCTCAGATGTCACGAATAGAGAGATATTTGTTTGTGACATCAAGCGGTTTCATCATTTTAAGAACGGCACTTGCTCCTGTCAGGACTTCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alba TAXi_C TAXi_N

Protein Analysis

981

Amino Acids

108.71

Weight (kDa)

6.05

Isoelectric Point (pI)

34.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	173 - 220	1.5e-08	PPR repeat family
PPR	PF01535	176 - 205	6.2e-06	PPR repeat
PPR_2	PF13041	275 - 323	2e-11	PPR repeat family
PPR	PF01535	277 - 305	3.9e-06	PPR repeat
PPR_2	PF13041	375 - 421	3.9e-08	PPR repeat family
PPR_2	PF13041	573 - 620	2.1e-10	PPR repeat family
PPR_2	PF13041	673 - 721	1.1e-11	PPR repeat family
PPR	PF01535	676 - 706	1.7e-06	PPR repeat
E_motif	PF20431	791 - 853	3.4e-25	E motif
Eplus_motif	PF20430	858 - 885	3.5e-06	E+ motif
DYW_deaminase	PF14432	889 - 981	1.8e-38	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0005957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35880 AT4G35880
fragaria_vesca	FvH4_1g11181 FvH4_1g11181 FvH4_1g11181 FvH4_1g11181 FvH4_1g11181
malus_domestica	MD15G1238400.v1.1
prunus_persica	Prupe.7G174000_v2.0.a1 Prupe.7G174000_v2.0.a1 Prupe.7G174000_v2.0.a1 Prupe.7G174000_v2.0.a1 Prupe.7G174000_v2.0.a1
pyrus_communis	pycom15g21200
rosa_chinensis	RchiOBHm_Chr2g0098481 RchiOBHm_Chr2g0098511
rosa_laevigata	RLG00000016803
rosa_roxburghii	Rroxscaffold_2G00143920
rosa_rugosa	Rorug02G0073600 Rorug02G0073700 Rorug02G0073700
rosa_samantha	Rh2AG120900 Rh2BG123800 Rh2BG124000 Rh2CG125500 Rh2DG126100
rosa_wichuraiana	Rw2G009480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	391
AasI	GACNNNNNNGTC	2 cut(s)	2114, 2512
Acc36I	ACCTGC	2 cut(s)	391, 1659
Acc65I	GGTACC	1 cut(s)	1994
AccB1I	GGYRCC	1 cut(s)	1994
AccB7I	CCANNNNNTGG	3 cut(s)	1186, 1900, 2340
AccI	GTMKAC	1 cut(s)	944
AciI	CCGC	5 cut(s)	490, 716, 1885, 1971, 2896
AclWI	GGATC	4 cut(s)	751, 1115, 1542, 2774
AcsI	RAATTY	4 cut(s)	976, 1037, 2214, 2282
AcuI	CTGAAG	3 cut(s)	723, 1524, 2643
AcyI	GRCGYC	1 cut(s)	2115
AfaI	GTAC	5 cut(s)	352, 616, 1526, 1755, 1996
AfeI	AGCGCT	1 cut(s)	1144
AfiI	CCNNNNNNNGG	7 cut(s)	120, 223, 1186, 1668, 1900, 2173, 2340
AflIII	ACRYGT	2 cut(s)	1521, 1653
AgsI	TTSAA	8 cut(s)	145, 376, 652, 1206, 2297, 2423, 2558, 2806
AjnI	CCWGG	8 cut(s)	293, 1041, 1136, 1179, 2015, 2166, 2520, 2539
AjuI	GAANNNNNNNTTGG	2 cut(s)	1655, 1687
AloI	GAACNNNNNNTCC	2 cut(s)	867, 899
Alw21I	GWGCWC	3 cut(s)	1402, 1465, 1948
Alw26I	GTCTC	5 cut(s)	221, 1272, 2032, 2339, 2590
Alw44I	GTGCAC	1 cut(s)	1944
AlwI	GGATC	4 cut(s)	751, 1115, 1542, 2774
AlwNI	CAGNNNCTG	1 cut(s)	2681
Ama87I	CYCGRG	1 cut(s)	1577
Aor51HI	AGCGCT	1 cut(s)	1144
AoxI	GGCC	3 cut(s)	46, 296, 1134
ApaLI	GTGCAC	1 cut(s)	1944
ApeKI	GCWGC	4 cut(s)	161, 1262, 1888, 2399
ApoI	RAATTY	4 cut(s)	976, 1037, 2214, 2282
ArsI	GACNNNNNNTTYG	2 cut(s)	1271, 1303
Asp718I	GGTACC	1 cut(s)	1994
AspA2I	CCTAGG	1 cut(s)	1471
AspLEI	GCGC	1 cut(s)	1145
AspS9I	GGNCC	1 cut(s)	1475
AsuC2I	CCSGG	1 cut(s)	36
AvaI	CYCGRG	1 cut(s)	1577
AvaII	GGWCC	1 cut(s)	1475
AvrII	CCTAGG	1 cut(s)	1471
BaeGI	GKGCMC	1 cut(s)	1948
BanI	GGYRCC	1 cut(s)	1994
BarI	GAAGNNNNNNTAC	2 cut(s)	343, 375
Bbv12I	GWGCWC	3 cut(s)	1402, 1465, 1948
BbvCI	CCTCAGC	1 cut(s)	1989
BbvI	GCAGC	4 cut(s)	148, 1249, 1900, 2386
BceAI	ACGGC	2 cut(s)	1656, 2932
BcgI	CGANNNNNNTGC	2 cut(s)	2228, 2262
BciT130I	CCWGG	8 cut(s)	295, 1043, 1138, 1181, 2017, 2168, 2522, 2541
BciVI	GTATCC	3 cut(s)	411, 2014, 2045
BclI	TGATCA	3 cut(s)	262, 1162, 1762
BcnI	CCSGG	1 cut(s)	36
BcoDI	GTCTC	5 cut(s)	221, 1272, 2032, 2339, 2590
BfaI	CTAG	5 cut(s)	138, 1248, 1472, 1557, 2642
BfmI	CTRYAG	1 cut(s)	2400
BfoI	RGCGCY	1 cut(s)	1146
BfuAI	ACCTGC	2 cut(s)	391, 1659
BfuI	GTATCC	3 cut(s)	411, 2014, 2045
BglII	AGATCT	1 cut(s)	1717
BisI	GCNGC	5 cut(s)	162, 1263, 1886, 1889, 2400
BlnI	CCTAGG	1 cut(s)	1471
BlsI	GCNGC	5 cut(s)	163, 1264, 1887, 1890, 2401
Bme1390I	CCNGG	9 cut(s)	36, 295, 1043, 1138, 1181, 2017, 2168, 2522, 2541
Bme18I	GGWCC	1 cut(s)	1475
BmeT110I	CYCGRG	1 cut(s)	1577
BmgT120I	GGNCC	1 cut(s)	1475
BmiI	GGNNCC	2 cut(s)	1996, 2538
BmrFI	CCNGG	9 cut(s)	36, 295, 1043, 1138, 1181, 2017, 2168, 2522, 2541
BmrI	ACTGGG	1 cut(s)	108
BmuI	ACTGGG	1 cut(s)	108
BoxI	GACNNNNGTC	1 cut(s)	1473
BpmI	CTGGAG	2 cut(s)	1159, 1479
Bpu10I	CCTNAGC	4 cut(s)	816, 861, 1401, 1989
BpuEI	CTTGAG	1 cut(s)	216
BpuMI	CCSGG	1 cut(s)	36
BsaBI	GATNNNNATC	1 cut(s)	876
BsaHI	GRCGYC	1 cut(s)	2115
BsaI	GGTCTC	1 cut(s)	1272
BsaJI	CCNNGG	7 cut(s)	1042, 1303, 1471, 1576, 2016, 2167, 2521
BsaXI	ACNNNNNCTCC	4 cut(s)	270, 300, 1511, 1541
Bsc4I	CCNNNNNNNGG	7 cut(s)	120, 223, 1186, 1668, 1900, 2173, 2340
Bse1I	ACTGG	4 cut(s)	114, 649, 1343, 1750
Bse3DI	GCAATG	1 cut(s)	1422
Bse8I	GATNNNNATC	1 cut(s)	876
BseBI	CCWGG	8 cut(s)	295, 1043, 1138, 1181, 2017, 2168, 2522, 2541
BseDI	CCNNGG	7 cut(s)	1042, 1303, 1471, 1576, 2016, 2167, 2521
BseGI	GGATG	7 cut(s)	348, 1299, 1388, 1573, 1979, 2491, 2602
BseJI	GATNNNNATC	1 cut(s)	876
BseLI	CCNNNNNNNGG	7 cut(s)	120, 223, 1186, 1668, 1900, 2173, 2340
BseMI	GCAATG	1 cut(s)	1422
BseMII	CTCAG	9 cut(s)	807, 875, 1415, 1980, 2198, 2418, 2673, 2697, 2868
BseNI	ACTGG	4 cut(s)	114, 649, 1343, 1750
BseSI	GKGCMC	1 cut(s)	1948
BseXI	GCAGC	4 cut(s)	148, 1249, 1900, 2386
BseYI	CCCAGC	3 cut(s)	1913, 2276, 2550
BshFI	GGCC	3 cut(s)	48, 298, 1136
BshNI	GGYRCC	1 cut(s)	1994
BsiHKAI	GWGCWC	3 cut(s)	1402, 1465, 1948
BsiHKCI	CYCGRG	1 cut(s)	1577
BsiSI	CCGG	1 cut(s)	35
BslFI	GGGAC	3 cut(s)	96, 1651, 2840
BslI	CCNNNNNNNGG	7 cut(s)	120, 223, 1186, 1668, 1900, 2173, 2340
BsmAI	GTCTC	5 cut(s)	221, 1272, 2032, 2339, 2590
BsmFI	GGGAC	3 cut(s)	96, 1651, 2840
BsmI	GAATGC	3 cut(s)	844, 1000, 1450
BsnI	GGCC	3 cut(s)	48, 298, 1136
Bso31I	GGTCTC	1 cut(s)	1272
BsoBI	CYCGRG	1 cut(s)	1577
Bsp1286I	GDGCHC	3 cut(s)	1402, 1465, 1948
Bsp1407I	TGTACA	1 cut(s)	1753
Bsp19I	CCATGG	1 cut(s)	1303
BspACI	CCGC	5 cut(s)	490, 716, 1885, 1971, 2896
BspANI	GGCC	3 cut(s)	48, 298, 1136
BspCNI	CTCAG	9 cut(s)	808, 874, 1414, 1981, 2199, 2419, 2674, 2698, 2867
BspHI	TCATGA	2 cut(s)	2040, 2590
BspLI	GGNNCC	2 cut(s)	1996, 2538
BspMAI	CTGCAG	1 cut(s)	2404
BspMI	ACCTGC	2 cut(s)	391, 1659
BspPI	GGATC	4 cut(s)	751, 1115, 1542, 2774
BspT107I	GGYRCC	1 cut(s)	1994
BspTNI	GGTCTC	1 cut(s)	1272
BsrDI	GCAATG	1 cut(s)	1422
BsrGI	TGTACA	1 cut(s)	1753
BsrI	ACTGG	4 cut(s)	114, 649, 1343, 1750
BssECI	CCNNGG	7 cut(s)	1042, 1303, 1471, 1576, 2016, 2167, 2521
BssNI	GRCGYC	1 cut(s)	2115
BssT1I	CCWWGG	2 cut(s)	1303, 1471
Bst2UI	CCWGG	8 cut(s)	295, 1043, 1138, 1181, 2017, 2168, 2522, 2541
Bst4CI	ACNGT	6 cut(s)	333, 949, 1735, 2026, 2328, 2350
Bst6I	CTCTTC	1 cut(s)	314
BstACI	GRCGYC	1 cut(s)	2115
BstAPI	GCANNNNNTGC	1 cut(s)	1091
BstAUI	TGTACA	1 cut(s)	1753
BstC8I	GCNNGC	7 cut(s)	490, 699, 1514, 1593, 1840, 1855, 2158
BstDSI	CCRYGG	1 cut(s)	1303
BstF5I	GGATG	7 cut(s)	348, 1299, 1388, 1573, 1979, 2491, 2602
BstH2I	RGCGCY	1 cut(s)	1146
BstHHI	GCGC	1 cut(s)	1145
BstMAI	GTCTC	5 cut(s)	221, 1272, 2032, 2339, 2590
BstMWI	GCNNNNNNNGC	8 cut(s)	713, 1091, 1142, 1691, 1775, 1910, 2087, 2416
BstNI	CCWGG	8 cut(s)	295, 1043, 1138, 1181, 2017, 2168, 2522, 2541
BstNSI	RCATGY	4 cut(s)	701, 1525, 1595, 1657
BstPAI	GACNNNNGTC	1 cut(s)	1473
BstSCI	CCNGG	9 cut(s)	34, 293, 1041, 1136, 1179, 2015, 2166, 2520, 2539
BstSFI	CTRYAG	1 cut(s)	2400
BstSLI	GKGCMC	1 cut(s)	1948
BstV1I	GCAGC	4 cut(s)	148, 1249, 1900, 2386
BstX2I	RGATCY	4 cut(s)	743, 1120, 1547, 1717
BstYI	RGATCY	4 cut(s)	743, 1120, 1547, 1717
BsuI	GTATCC	3 cut(s)	411, 2014, 2045
BsuRI	GGCC	3 cut(s)	48, 298, 1136
BtgI	CCRYGG	1 cut(s)	1303
BtsCI	GGATG	7 cut(s)	348, 1299, 1388, 1573, 1979, 2491, 2602
BtsI	GCAGTG	1 cut(s)	714
BtsIMutI	CAGTG	5 cut(s)	121, 199, 714, 1266, 2703
BveI	ACCTGC	2 cut(s)	391, 1659
Cac8I	GCNNGC	7 cut(s)	490, 699, 1514, 1593, 1840, 1855, 2158
CaiI	CAGNNNCTG	1 cut(s)	2681
CciI	TCATGA	2 cut(s)	2040, 2590
CfoI	GCGC	1 cut(s)	1145
Cfr13I	GGNCC	1 cut(s)	1475
CseI	GACGC	1 cut(s)	2104
Csp6I	GTAC	5 cut(s)	351, 615, 1525, 1754, 1995
CspCI	CAANNNNNGTGG	2 cut(s)	1255, 1290
CviQI	GTAC	5 cut(s)	351, 615, 1525, 1754, 1995
DrdI	GACNNNNNNGTC	2 cut(s)	2114, 2512
DseDI	GACNNNNNNGTC	2 cut(s)	2114, 2512
Eam1104I	CTCTTC	1 cut(s)	314
EarI	CTCTTC	1 cut(s)	314
Eco130I	CCWWGG	2 cut(s)	1303, 1471
Eco147I	AGGCCT	2 cut(s)	48, 298
Eco31I	GGTCTC	1 cut(s)	1272
Eco47I	GGWCC	1 cut(s)	1475
Eco47III	AGCGCT	1 cut(s)	1144
Eco57I	CTGAAG	3 cut(s)	723, 1524, 2643
Eco88I	CYCGRG	1 cut(s)	1577
EcoRI	GAATTC	1 cut(s)	1037
EcoRII	CCWGG	8 cut(s)	293, 1041, 1136, 1179, 2015, 2166, 2520, 2539
EcoT14I	CCWWGG	2 cut(s)	1303, 1471
EcoT22I	ATGCAT	1 cut(s)	1979
ErhI	CCWWGG	2 cut(s)	1303, 1471
FalI	AAGNNNNNCTT	2 cut(s)	923, 955
FaqI	GGGAC	3 cut(s)	96, 1651, 2840
FauI	CCCGC	2 cut(s)	497, 709
FauNDI	CATATG	1 cut(s)	2819
FbaI	TGATCA	3 cut(s)	262, 1162, 1762
FblI	GTMKAC	1 cut(s)	944
Fnu4HI	GCNGC	5 cut(s)	162, 1263, 1886, 1889, 2400
FokI	GGATG	7 cut(s)	355, 1286, 1395, 1580, 1986, 2498, 2589
Fsp4HI	GCNGC	5 cut(s)	162, 1263, 1886, 1889, 2400
FspBI	CTAG	5 cut(s)	138, 1248, 1472, 1557, 2642
GlaI	GCGC	1 cut(s)	1144
GluI	GCNGC	5 cut(s)	162, 1263, 1886, 1889, 2400
GsaI	CCCAGC	3 cut(s)	1917, 2280, 2554
GsuI	CTGGAG	2 cut(s)	1159, 1479
HaeII	RGCGCY	1 cut(s)	1146
HaeIII	GGCC	3 cut(s)	48, 298, 1136
HapII	CCGG	1 cut(s)	35
HgaI	GACGC	1 cut(s)	2104
HhaI	GCGC	1 cut(s)	1145
Hin1I	GRCGYC	1 cut(s)	2115
Hin6I	GCGC	1 cut(s)	1143
HinP1I	GCGC	1 cut(s)	1143
HindIII	AAGCTT	3 cut(s)	679, 2299, 2408
HpaII	CCGG	1 cut(s)	35
Hpy166II	GTNNAC	7 cut(s)	460, 534, 936, 945, 1830, 1946, 2575
Hpy188I	TCNGA	9 cut(s)	730, 888, 916, 1336, 1434, 1504, 1797, 2628, 2857
Hpy8I	GTNNAC	7 cut(s)	460, 534, 936, 945, 1830, 1946, 2575
HpyCH4III	ACNGT	6 cut(s)	333, 949, 1735, 2026, 2328, 2350
HpyF10VI	GCNNNNNNNGC	8 cut(s)	713, 1091, 1142, 1691, 1775, 1910, 2087, 2416
Hsp92I	GRCGYC	1 cut(s)	2115
HspAI	GCGC	1 cut(s)	1143
KpnI	GGTACC	1 cut(s)	1998
Ksp22I	TGATCA	3 cut(s)	262, 1162, 1762
LmnI	GCTCC	7 cut(s)	1140, 1460, 1862, 1896, 2357, 2536, 2930
Lsp1109I	GCAGC	4 cut(s)	148, 1249, 1900, 2386
MaeI	CTAG	5 cut(s)	138, 1248, 1472, 1557, 2642
MaeIII	GTNAC	7 cut(s)	8, 30, 51, 2162, 2308, 2860, 2885
MboII	GAAGA	8 cut(s)	328, 331, 616, 1331, 1937, 2192, 2684, 2804
MfeI	CAATTG	1 cut(s)	1086
MflI	RGATCY	4 cut(s)	743, 1120, 1547, 1717
MhlI	GDGCHC	3 cut(s)	1402, 1465, 1948
MlyI	GAGTC	4 cut(s)	188, 193, 223, 2195
MmeI	TCCRAC	1 cut(s)	721
Mph1103I	ATGCAT	1 cut(s)	1979
MslI	CAYNNNNRTG	3 cut(s)	1290, 1623, 1652
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	9 cut(s)	36, 295, 1043, 1138, 1181, 2017, 2168, 2522, 2541
MunI	CAATTG	1 cut(s)	1086
Mva1269I	GAATGC	3 cut(s)	844, 1000, 1450
MvaI	CCWGG	8 cut(s)	295, 1043, 1138, 1181, 2017, 2168, 2522, 2541
MwoI	GCNNNNNNNGC	8 cut(s)	713, 1091, 1142, 1691, 1775, 1910, 2087, 2416
NciI	CCSGG	1 cut(s)	36
NcoI	CCATGG	1 cut(s)	1303
NdeI	CATATG	1 cut(s)	2819
NlaIV	GGNNCC	2 cut(s)	1996, 2538
NmuCI	GTSAC	6 cut(s)	8, 30, 2162, 2308, 2860, 2885
NsiI	ATGCAT	1 cut(s)	1979
NspI	RCATGY	4 cut(s)	701, 1525, 1595, 1657
PaeI	GCATGC	2 cut(s)	701, 1595
PagI	TCATGA	2 cut(s)	2040, 2590
PaqCI	CACCTGC	1 cut(s)	391
PceI	AGGCCT	2 cut(s)	48, 298
PciI	ACATGT	2 cut(s)	1521, 1653
PcsI	WCGNNNNNNNCGW	1 cut(s)	1198
PctI	GAATGC	3 cut(s)	844, 1000, 1450
PfeI	GAWTC	7 cut(s)	428, 476, 544, 911, 1331, 2435, 2610
PflMI	CCANNNNNTGG	3 cut(s)	1186, 1900, 2340
PkrI	GCNGC	5 cut(s)	163, 1264, 1887, 1890, 2401
PleI	GAGTC	4 cut(s)	187, 192, 223, 2195
PpsI	GAGTC	4 cut(s)	187, 192, 223, 2195
PscI	ACATGT	2 cut(s)	1521, 1653
PshAI	GACNNNNGTC	1 cut(s)	1473
Psp6I	CCWGG	8 cut(s)	293, 1041, 1136, 1179, 2015, 2166, 2520, 2539
PspFI	CCCAGC	3 cut(s)	1913, 2276, 2550
PspGI	CCWGG	8 cut(s)	293, 1041, 1136, 1179, 2015, 2166, 2520, 2539
PspN4I	GGNNCC	2 cut(s)	1996, 2538
PspPI	GGNCC	1 cut(s)	1475
PstI	CTGCAG	1 cut(s)	2404
PstNI	CAGNNNCTG	1 cut(s)	2681
PsuI	RGATCY	4 cut(s)	743, 1120, 1547, 1717
RsaI	GTAC	5 cut(s)	352, 616, 1526, 1755, 1996
RsaNI	GTAC	5 cut(s)	351, 615, 1525, 1754, 1995
RseI	CAYNNNNRTG	3 cut(s)	1290, 1623, 1652
SatI	GCNGC	5 cut(s)	162, 1263, 1886, 1889, 2400
Sau96I	GGNCC	1 cut(s)	1475
SchI	GAGTC	4 cut(s)	188, 193, 223, 2195
ScrFI	CCNGG	9 cut(s)	36, 295, 1043, 1138, 1181, 2017, 2168, 2522, 2541
SduI	GDGCHC	3 cut(s)	1402, 1465, 1948
SfcI	CTRYAG	1 cut(s)	2400
SinI	GGWCC	1 cut(s)	1475
SmiMI	CAYNNNNRTG	3 cut(s)	1290, 1623, 1652
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
SphI	GCATGC	2 cut(s)	701, 1595
SseBI	AGGCCT	2 cut(s)	48, 298
SsiI	CCGC	5 cut(s)	490, 716, 1885, 1971, 2896
SspMI	CTAG	5 cut(s)	138, 1248, 1472, 1557, 2642
StuI	AGGCCT	2 cut(s)	48, 298
StyD4I	CCNGG	9 cut(s)	34, 293, 1041, 1136, 1179, 2015, 2166, 2520, 2539
StyI	CCWWGG	2 cut(s)	1303, 1471
TaaI	ACNGT	6 cut(s)	333, 949, 1735, 2026, 2328, 2350
TatI	WGTACW	2 cut(s)	1524, 1753
TauI	GCSGC	1 cut(s)	1888
TfiI	GAWTC	7 cut(s)	428, 476, 544, 911, 1331, 2435, 2610
TscAI	CASTG	5 cut(s)	121, 199, 714, 1273, 2710
TseFI	GTSAC	6 cut(s)	8, 30, 2162, 2308, 2860, 2885
TseI	GCWGC	4 cut(s)	161, 1262, 1888, 2399
Tsp45I	GTSAC	6 cut(s)	8, 30, 2162, 2308, 2860, 2885
TspGWI	ACGGA	1 cut(s)	923
TspRI	CASTG	5 cut(s)	121, 199, 714, 1273, 2710
Van91I	CCANNNNNTGG	3 cut(s)	1186, 1900, 2340
VneI	GTGCAC	1 cut(s)	1944
VpaK11BI	GGWCC	1 cut(s)	1475
XapI	RAATTY	4 cut(s)	976, 1037, 2214, 2282
XbaI	TCTAGA	1 cut(s)	137
XceI	RCATGY	4 cut(s)	701, 1525, 1595, 1657
XmaJI	CCTAGG	1 cut(s)	1471
XmiI	GTMKAC	1 cut(s)	944
XspI	CTAG	5 cut(s)	138, 1248, 1472, 1557, 2642
Zsp2I	ATGCAT	1 cut(s)	1979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.