Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005957

Physical Location & Seq

Genomic Coordinates Forward (+)

10562286 .. 10564091

Gene Structure 1806 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG123800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGACGAATATGTTGAGGCATACATTACCTTTGGGGAGTCCTGACCAGGAAGAGACCCCATTTAATTATAACCCTTCACATCCAACCTACAACATCAGTGTAACTCAAATTAGAGTGGGGACAAATATTATGGACATTGATTTCACTGCTCTTTTTGATTCTGGGACTTCTTTCACATATCTGGATGATCCAACTTATACAAGGATTTCAGAGAGTTTCAATTCACAAGCTCGAGATAAGCGTCGTCCACCTGACTCAAGGACTCCATTTGAATATTGTTATGACATGAGTCCAGATGCAAATGCTAGTTGGATATCTGGTGTCAGTTTAACCATGAAAGGTGGAAGCCAGTTTGAAGTATACAATCCAAATATTGTTATCTCCACTGAGAGCGAGCTGGTCTATTCCCTGGCTGTTGTCAAGAGTTTGGAACTAAATATAATTGGACCTATCGATCCCTCTACAGAAAACTTCATGACAGGCTACTATGTTGTATTTGACAGAGAGAAAAAGGTTCTGGGCTGGAAGAAGTTTTACTGCTATGACACTGAGGACCATCATACATACTTACCTTTTAAACCACGCTCCTACAATGTGCCTCCTGCTTTTGCTCATGGACTGCGCAACCATTCTATTTCAGAATCCGCGAAGAAGACCAGCCAGACTTCAGCTGCTTCTCTGCCTTACTATAGTCATAGTGTCACACCTCTCTTCTGCTTTCTTTCTCTTCACTATCCTCCTCTTCCCATTACCATGGTTTTGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alba TAXi_C TAXi_N

Protein Analysis

255

Amino Acids

28.97

Weight (kDa)

5.72

Isoelectric Point (pI)

51.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	29 - 174	7.2e-08	Eukaryotic aspartyl protease
TAXi_C	PF14541	30 - 176	3.8e-13	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35880 AT4G35880
fragaria_vesca	FvH4_1g11181 FvH4_1g11181 FvH4_1g11181 FvH4_1g11181 FvH4_1g11181
malus_domestica	MD15G1238400.v1.1
prunus_persica	Prupe.7G174000_v2.0.a1 Prupe.7G174000_v2.0.a1 Prupe.7G174000_v2.0.a1 Prupe.7G174000_v2.0.a1 Prupe.7G174000_v2.0.a1
pyrus_communis	pycom15g21200
rosa_chinensis	RchiOBHm_Chr2g0098481 RchiOBHm_Chr2g0098511
rosa_laevigata	RLG00000016803
rosa_roxburghii	Rroxscaffold_2G00143920
rosa_rugosa	Rorug02G0073600 Rorug02G0073700 Rorug02G0073700
rosa_samantha	Rh2AG120900 Rh2BG123800 Rh2BG124000 Rh2CG125500 Rh2DG126100
rosa_wichuraiana	Rw2G009480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	69
Acc16I	TGCGCA	1 cut(s)	623
AccI	GTMKAC	1 cut(s)	360
AccII	CGCG	1 cut(s)	647
AciI	CCGC	1 cut(s)	645
AclWI	GGATC	2 cut(s)	182, 449
AcuI	CTGAAG	1 cut(s)	651
AgsI	TTSAA	3 cut(s)	220, 272, 356
AjnI	CCWGG	2 cut(s)	45, 408
AluBI	AGCT	3 cut(s)	230, 397, 671
AluI	AGCT	3 cut(s)	230, 397, 671
Alw26I	GTCTC	1 cut(s)	47
AlwI	GGATC	2 cut(s)	182, 449
Ama87I	CYCGRG	1 cut(s)	231
ApeKI	GCWGC	1 cut(s)	671
AspLEI	GCGC	1 cut(s)	624
AspS9I	GGNCC	2 cut(s)	446, 553
AvaI	CYCGRG	1 cut(s)	231
AvaII	GGWCC	2 cut(s)	446, 553
BarI	GAAGNNNNNNTAC	2 cut(s)	518, 550
BbsI	GAAGAC	1 cut(s)	659
BbvI	GCAGC	1 cut(s)	658
BccI	CCATC	1 cut(s)	564
BciT130I	CCWGG	2 cut(s)	47, 410
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	1 cut(s)	306
BfmI	CTRYAG	2 cut(s)	462, 688
BisI	GCNGC	1 cut(s)	672
BlsI	GCNGC	1 cut(s)	673
Bme1390I	CCNGG	2 cut(s)	47, 410
Bme18I	GGWCC	2 cut(s)	446, 553
BmeT110I	CYCGRG	1 cut(s)	231
BmgT120I	GGNCC	2 cut(s)	446, 553
BmrFI	CCNGG	2 cut(s)	47, 410
BmsI	GCATC	1 cut(s)	286
BoxI	GACNNNNGTC	1 cut(s)	288
BpiI	GAAGAC	1 cut(s)	659
BpuEI	CTTGAG	1 cut(s)	241
Bsa29I	ATCGAT	1 cut(s)	453
BsaI	GGTCTC	1 cut(s)	47
BsaJI	CCNNGG	2 cut(s)	408, 753
Bse1I	ACTGG	1 cut(s)	349
BseBI	CCWGG	2 cut(s)	47, 410
BseCI	ATCGAT	1 cut(s)	453
BseDI	CCNNGG	2 cut(s)	408, 753
BseGI	GGATG	2 cut(s)	79, 190
BseMII	CTCAG	2 cut(s)	378, 540
BseNI	ACTGG	1 cut(s)	349
BseRI	GAGGAG	1 cut(s)	729
BseXI	GCAGC	1 cut(s)	658
Bsh1236I	CGCG	1 cut(s)	647
BshVI	ATCGAT	1 cut(s)	453
BsiHKCI	CYCGRG	1 cut(s)	231
BslFI	GGGAC	2 cut(s)	133, 178
BsmAI	GTCTC	1 cut(s)	47
BsmFI	GGGAC	2 cut(s)	133, 178
Bso31I	GGTCTC	1 cut(s)	47
BsoBI	CYCGRG	1 cut(s)	231
Bsp143I	GATC	2 cut(s)	187, 454
Bsp19I	CCATGG	1 cut(s)	753
BspACI	CCGC	1 cut(s)	645
BspCNI	CTCAG	2 cut(s)	379, 541
BspDI	ATCGAT	1 cut(s)	453
BspFNI	CGCG	1 cut(s)	647
BspHI	TCATGA	1 cut(s)	474
BspPI	GGATC	2 cut(s)	182, 449
BspTNI	GGTCTC	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	349
BssECI	CCNNGG	2 cut(s)	408, 753
BssMI	GATC	2 cut(s)	187, 454
BssNAI	GTATAC	1 cut(s)	361
BssT1I	CCWWGG	1 cut(s)	753
Bst1107I	GTATAC	1 cut(s)	361
Bst2UI	CCWGG	2 cut(s)	47, 410
Bst6I	CTCTTC	4 cut(s)	45, 716, 732, 747
BstC8I	GCNNGC	1 cut(s)	395
BstDEI	CTNAG	2 cut(s)	387, 549
BstDSI	CCRYGG	1 cut(s)	753
BstF5I	GGATG	2 cut(s)	79, 190
BstFNI	CGCG	1 cut(s)	647
BstHHI	GCGC	1 cut(s)	624
BstKTI	GATC	2 cut(s)	190, 457
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	2 cut(s)	187, 454
BstNI	CCWGG	2 cut(s)	47, 410
BstPAI	GACNNNNGTC	1 cut(s)	288
BstSCI	CCNGG	2 cut(s)	45, 408
BstSFI	CTRYAG	2 cut(s)	462, 688
BstUI	CGCG	1 cut(s)	647
BstV1I	GCAGC	1 cut(s)	658
BstV2I	GAAGAC	1 cut(s)	659
BstXI	CCANNNNNNTGG	1 cut(s)	754
BstZ17I	GTATAC	1 cut(s)	361
Bsu15I	ATCGAT	1 cut(s)	453
BsuTUI	ATCGAT	1 cut(s)	453
BtgI	CCRYGG	1 cut(s)	753
BtsCI	GGATG	2 cut(s)	79, 190
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	4 cut(s)	103, 144, 384, 546
Cac8I	GCNNGC	1 cut(s)	395
CciI	TCATGA	1 cut(s)	474
CfoI	GCGC	1 cut(s)	624
Cfr13I	GGNCC	2 cut(s)	446, 553
ClaI	ATCGAT	1 cut(s)	453
CseI	GACGC	1 cut(s)	230
CviAII	CATG	5 cut(s)	286, 334, 475, 614, 754
CviJI	RGCY	8 cut(s)	230, 348, 397, 413, 483, 522, 660, 671
CviKI_1	RGCY	8 cut(s)	230, 348, 397, 413, 483, 522, 660, 671
DdeI	CTNAG	2 cut(s)	387, 549
DpnI	GATC	2 cut(s)	189, 456
DpnII	GATC	2 cut(s)	187, 454
DraI	TTTAAA	1 cut(s)	577
Eam1104I	CTCTTC	4 cut(s)	45, 716, 732, 747
EarI	CTCTTC	4 cut(s)	45, 716, 732, 747
Eco130I	CCWWGG	1 cut(s)	753
Eco31I	GGTCTC	1 cut(s)	47
Eco32I	GATATC	1 cut(s)	315
Eco47I	GGWCC	2 cut(s)	446, 553
Eco57I	CTGAAG	1 cut(s)	651
Eco88I	CYCGRG	1 cut(s)	231
EcoRII	CCWGG	2 cut(s)	45, 408
EcoRV	GATATC	1 cut(s)	315
EcoT14I	CCWWGG	1 cut(s)	753
ErhI	CCWWGG	1 cut(s)	753
FaeI	CATG	5 cut(s)	289, 337, 478, 617, 757
FaqI	GGGAC	2 cut(s)	133, 178
FatI	CATG	5 cut(s)	285, 333, 474, 613, 753
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	1 cut(s)	672
FokI	GGATG	2 cut(s)	66, 197
Fsp4HI	GCNGC	1 cut(s)	672
FspBI	CTAG	1 cut(s)	306
FspI	TGCGCA	1 cut(s)	623
GlaI	GCGC	1 cut(s)	623
GluI	GCNGC	1 cut(s)	672
HgaI	GACGC	1 cut(s)	230
HhaI	GCGC	1 cut(s)	624
Hin1II	CATG	5 cut(s)	289, 337, 478, 617, 757
Hin6I	GCGC	1 cut(s)	622
HinP1I	GCGC	1 cut(s)	622
HinfI	GANTC	6 cut(s)	37, 158, 254, 262, 289, 641
Hpy166II	GTNNAC	2 cut(s)	248, 361
Hpy188I	TCNGA	2 cut(s)	211, 640
Hpy188III	TCNNGA	6 cut(s)	41, 182, 233, 293, 421, 475
Hpy8I	GTNNAC	2 cut(s)	248, 361
Hpy99I	CGWCG	1 cut(s)	246
HpyAV	CCTTC	1 cut(s)	84
HpyCH4V	TGCA	1 cut(s)	299
HpyF3I	CTNAG	2 cut(s)	387, 549
Hsp92II	CATG	5 cut(s)	289, 337, 478, 617, 757
HspAI	GCGC	1 cut(s)	622
Kzo9I	GATC	2 cut(s)	187, 454
LmnI	GCTCC	1 cut(s)	590
Lsp1109I	GCAGC	1 cut(s)	658
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	1 cut(s)	306
MaeIII	GTNAC	2 cut(s)	100, 700
MalI	GATC	2 cut(s)	189, 456
MboI	GATC	2 cut(s)	187, 454
MboII	GAAGA	7 cut(s)	62, 538, 661, 664, 703, 719, 734
MluCI	AATT	4 cut(s)	64, 108, 220, 441
MlyI	GAGTC	4 cut(s)	46, 248, 256, 298
MmeI	TCCRAC	3 cut(s)	107, 215, 290
MnlI	CCTC	7 cut(s)	9, 469, 544, 609, 717, 747, 750
MseI	TTAA	3 cut(s)	63, 329, 576
MslI	CAYNNNNRTG	1 cut(s)	752
MspA1I	CMGCKG	1 cut(s)	671
MspR9I	CCNGG	2 cut(s)	47, 410
MvaI	CCWGG	2 cut(s)	47, 410
MvnI	CGCG	1 cut(s)	647
NcoI	CCATGG	1 cut(s)	753
NdeII	GATC	2 cut(s)	187, 454
NlaIII	CATG	5 cut(s)	289, 337, 478, 617, 757
NmuCI	GTSAC	1 cut(s)	700
NsbI	TGCGCA	1 cut(s)	623
PaeR7I	CTCGAG	1 cut(s)	231
PagI	TCATGA	1 cut(s)	474
PcsI	WCGNNNNNNNCGW	1 cut(s)	238
PfeI	GAWTC	2 cut(s)	158, 641
PkrI	GCNGC	1 cut(s)	673
PleI	GAGTC	4 cut(s)	45, 248, 256, 297
PpsI	GAGTC	4 cut(s)	45, 248, 256, 297
PshAI	GACNNNNGTC	1 cut(s)	288
PsiI	TTATAA	1 cut(s)	69
Psp6I	CCWGG	2 cut(s)	45, 408
PspGI	CCWGG	2 cut(s)	45, 408
PspPI	GGNCC	2 cut(s)	446, 553
PvuII	CAGCTG	1 cut(s)	671
RseI	CAYNNNNRTG	1 cut(s)	752
SaqAI	TTAA	3 cut(s)	63, 329, 576
SatI	GCNGC	1 cut(s)	672
Sau3AI	GATC	2 cut(s)	187, 454
Sau96I	GGNCC	2 cut(s)	446, 553
SchI	GAGTC	4 cut(s)	46, 248, 256, 298
ScrFI	CCNGG	2 cut(s)	47, 410
SfaNI	GCATC	1 cut(s)	286
SfcI	CTRYAG	2 cut(s)	462, 688
Sfr274I	CTCGAG	1 cut(s)	231
SinI	GGWCC	2 cut(s)	446, 553
SlaI	CTCGAG	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	752
SmlI	CTYRAG	2 cut(s)	231, 256
SmoI	CTYRAG	2 cut(s)	231, 256
Sse9I	AATT	4 cut(s)	64, 108, 220, 441
SsiI	CCGC	1 cut(s)	645
SspI	AATATT	3 cut(s)	127, 275, 373
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	2 cut(s)	45, 408
StyI	CCWWGG	1 cut(s)	753
TaqI	TCGA	2 cut(s)	232, 453
TasI	AATT	4 cut(s)	64, 108, 220, 441
TfiI	GAWTC	2 cut(s)	158, 641
Tru1I	TTAA	3 cut(s)	63, 329, 576
Tru9I	TTAA	3 cut(s)	63, 329, 576
TscAI	CASTG	4 cut(s)	103, 151, 391, 553
TseFI	GTSAC	1 cut(s)	700
TseI	GCWGC	1 cut(s)	671
Tsp45I	GTSAC	1 cut(s)	700
TspDTI	ATGAA	2 cut(s)	350, 463
TspRI	CASTG	4 cut(s)	103, 151, 391, 553
VpaK11BI	GGWCC	2 cut(s)	446, 553
XhoI	CTCGAG	1 cut(s)	231
XmiI	GTMKAC	1 cut(s)	360
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.