Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005957

Physical Location & Seq

Genomic Coordinates Forward (+)

10572591 .. 10576068

Gene Structure 3478 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG126100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGAAGTTTATGGTGGCGCTGGATACCGGCAGTGACCTGTTTTGGGTGCCTTGTGAAGGAACAGCTTATGCTCCTAATTTTGAGGTCAGCAAATATGACCCGAAAGGGTCGTCAACTAGCAAGAAAGTCCGTTGCAACAACAGGTTGTGTATGCAGCGTAATAAATGTCTGGGAGCATTCAACACTTGCCCTTATAGGGTCTCTTATGTCTCTGATCAAACTTCTACGTCTGGGATATTGGTAGAGGATGTTCTGCACTTAACAACAGAAGATAGTCATCATGAATATGTTGAGGCATACATTACCTTTGGTTGTGGCCAGGTGCAAAGTGGTTCATTCCTGGATATTGCTGCTCCTAATGGTTTGTTTGGTCTTGGTATGGAGAAGATATCTGTTCCTAGCATTTTATCCCGGGAAGGCTTTACCGCAGATTCCTTTTCCATGTGTTTTGGACATGATGGAGTTGGGAGAATCAATTTTGGTGACAAGGGGAGTCCTGACCAGGAAGAGACCCCATTTAATTATAACCCTTCACATCCAACCTACAACATCAGTGTAACTCAAATTAGAGTGGGGACAGATATTATGGACATTGATTTCACTGCTCTTTTTGATTCTGGGACTTCTTTCACATATTTGGATGACCCAACTTATACAAGGATTTCAGAGAGTTTCAATTCACAAGCTCGAGATAAGCGTCGTCCACCTGACTCAAGGATTCCATTTGAATATTGTTATGATATGAGTCCAGATGCAAATGCTAGTTGGATATCTGGTGTCAGTTTAACCATGAAAGGTGGAAGCCAGTTTGAAGTATATAATCCAATCATTGTTATCTCCACTCAGAGCGAGCTGGTCTATTGCCTGGCTGTTGTCAAGAGTTTGGAACTAAATATAATTGGACAAAACTTCATGACAGGCTACCATGTTGTATTTGACAGAGAGAAAAAGGTTTTGGGCTGGAAGAAGTTTGACTGCTATGACACTGAGGACCATCATACTTACTTGCCTATTAAACCACGCTCCTACAATGTGCCTCCTGCTTTTGCTCATGGACTACGCAACCATTCTATTTCAGAATCAGCGAAAAAGACCAGCCAGACTTCAGCTGCTTCTCTGCCTTACTATAGTCATACTTCTCTTCAGACTTGCTTTCTATTCACCATCCTCCTCTTCCTCTTACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alba TAXi_C TAXi_N

Protein Analysis

395

Amino Acids

44.17

Weight (kDa)

5.56

Isoelectric Point (pI)

38.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	2 - 162	9.2e-32	Xylanase inhibitor N-terminal
Asp	PF00026	2 - 320	7.7e-20	Eukaryotic aspartyl protease
TAXi_C	PF14541	182 - 322	6.8e-17	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35880 AT4G35880
fragaria_vesca	FvH4_1g11181 FvH4_1g11181 FvH4_1g11181 FvH4_1g11181 FvH4_1g11181
malus_domestica	MD15G1238400.v1.1
prunus_persica	Prupe.7G174000_v2.0.a1 Prupe.7G174000_v2.0.a1 Prupe.7G174000_v2.0.a1 Prupe.7G174000_v2.0.a1 Prupe.7G174000_v2.0.a1
pyrus_communis	pycom15g21200
rosa_chinensis	RchiOBHm_Chr2g0098481 RchiOBHm_Chr2g0098511
rosa_laevigata	RLG00000016803
rosa_roxburghii	Rroxscaffold_2G00143920
rosa_rugosa	Rorug02G0073600 Rorug02G0073700 Rorug02G0073700
rosa_samantha	Rh2AG120900 Rh2BG123800 Rh2BG124000 Rh2CG125500 Rh2DG126100
rosa_wichuraiana	Rw2G009480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	525
AccB1I	GGYRCC	1 cut(s)	46
AciI	CCGC	1 cut(s)	426
AcoI	YGGCCR	1 cut(s)	316
AcuI	CTGAAG	2 cut(s)	1089, 1127
AfiI	CCNNNNNNNGG	3 cut(s)	43, 56, 196
AgsI	TTSAA	4 cut(s)	181, 676, 728, 812
AjnI	CCWGG	4 cut(s)	318, 339, 501, 864
AjuI	GAANNNNNNNTTGG	2 cut(s)	938, 970
AluBI	AGCT	4 cut(s)	65, 686, 853, 1109
AluI	AGCT	4 cut(s)	65, 686, 853, 1109
Alw26I	GTCTC	3 cut(s)	205, 214, 503
Ama87I	CYCGRG	2 cut(s)	411, 687
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	3 cut(s)	154, 350, 1109
ArsI	GACNNNNNNTTYG	2 cut(s)	95, 127
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	991
AsuC2I	CCSGG	2 cut(s)	412, 413
AsuHPI	GGTGA	2 cut(s)	494, 1153
AvaI	CYCGRG	2 cut(s)	411, 687
AvaII	GGWCC	1 cut(s)	991
BalI	TGGCCA	1 cut(s)	318
BanI	GGYRCC	1 cut(s)	46
BbvI	GCAGC	3 cut(s)	166, 337, 1096
BccI	CCATC	3 cut(s)	452, 1002, 1172
BciT130I	CCWGG	4 cut(s)	320, 341, 503, 866
BciVI	GTATCC	1 cut(s)	16
BclI	TGATCA	1 cut(s)	214
BcnI	CCSGG	2 cut(s)	412, 413
BcoDI	GTCTC	3 cut(s)	205, 214, 503
BfaI	CTAG	3 cut(s)	117, 399, 762
BfmI	CTRYAG	1 cut(s)	1126
BfoI	RGCGCY	1 cut(s)	20
BfuI	GTATCC	1 cut(s)	16
BisI	GCNGC	3 cut(s)	155, 351, 1110
BlsI	GCNGC	3 cut(s)	156, 352, 1111
Bme1390I	CCNGG	6 cut(s)	320, 341, 412, 413, 503, 866
Bme18I	GGWCC	1 cut(s)	991
BmeT110I	CYCGRG	2 cut(s)	411, 687
BmgT120I	GGNCC	1 cut(s)	991
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	6 cut(s)	320, 341, 412, 413, 503, 866
BmsI	GCATC	1 cut(s)	742
BpuEI	CTTGAG	1 cut(s)	697
BpuMI	CCSGG	2 cut(s)	412, 413
BsaBI	GATNNNNATC	1 cut(s)	276
BsaI	GGTCTC	2 cut(s)	205, 503
BsaJI	CCNNGG	1 cut(s)	411
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 56, 196
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	805
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	4 cut(s)	320, 341, 503, 866
BseDI	CCNNGG	1 cut(s)	411
BseGI	GGATG	4 cut(s)	253, 535, 646, 1164
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	3 cut(s)	43, 56, 196
BseMII	CTCAG	2 cut(s)	857, 978
BseNI	ACTGG	1 cut(s)	805
BseRI	GAGGAG	1 cut(s)	1160
BseXI	GCAGC	3 cut(s)	166, 337, 1096
BsgI	GTGCAG	1 cut(s)	239
BshFI	GGCC	1 cut(s)	318
BshNI	GGYRCC	1 cut(s)	46
BsiHKCI	CYCGRG	2 cut(s)	411, 687
BsiSI	CCGG	2 cut(s)	27, 412
BslFI	GGGAC	2 cut(s)	589, 634
BslI	CCNNNNNNNGG	3 cut(s)	43, 56, 196
BsmAI	GTCTC	3 cut(s)	205, 214, 503
BsmFI	GGGAC	2 cut(s)	589, 634
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	318
Bso31I	GGTCTC	2 cut(s)	205, 503
BsoBI	CYCGRG	2 cut(s)	411, 687
Bsp143I	GATC	1 cut(s)	214
BspACI	CCGC	1 cut(s)	426
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	2 cut(s)	856, 979
BspHI	TCATGA	2 cut(s)	280, 912
BspLI	GGNNCC	1 cut(s)	48
BspT107I	GGYRCC	1 cut(s)	46
BspTNI	GGTCTC	2 cut(s)	205, 503
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	805
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	1 cut(s)	214
Bst2UI	CCWGG	4 cut(s)	320, 341, 503, 866
Bst4CI	ACNGT	1 cut(s)	1185
Bst6I	CTCTTC	3 cut(s)	501, 1146, 1178
BstC8I	GCNNGC	1 cut(s)	851
BstDEI	CTNAG	2 cut(s)	843, 987
BstENI	CCTNNNNNAGG	1 cut(s)	54
BstF5I	GGATG	4 cut(s)	253, 535, 646, 1164
BstH2I	RGCGCY	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	3 cut(s)	205, 214, 503
BstMBI	GATC	1 cut(s)	214
BstNI	CCWGG	4 cut(s)	320, 341, 503, 866
BstSCI	CCNGG	6 cut(s)	318, 339, 410, 411, 501, 864
BstSFI	CTRYAG	1 cut(s)	1126
BstV1I	GCAGC	3 cut(s)	166, 337, 1096
BsuI	GTATCC	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	318
BtsCI	GGATG	4 cut(s)	253, 535, 646, 1164
BtsI	GCAGTG	2 cut(s)	37, 600
BtsIMutI	CAGTG	4 cut(s)	37, 559, 600, 984
Cac8I	GCNNGC	1 cut(s)	851
CciI	TCATGA	2 cut(s)	280, 912
CfoI	GCGC	1 cut(s)	19
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	991
Cfr9I	CCCGGG	1 cut(s)	411
CseI	GACGC	1 cut(s)	686
CviAII	CATG	7 cut(s)	281, 442, 455, 790, 913, 926, 1052
DdeI	CTNAG	2 cut(s)	843, 987
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	316
Eam1104I	CTCTTC	3 cut(s)	501, 1146, 1178
EarI	CTCTTC	3 cut(s)	501, 1146, 1178
Eco31I	GGTCTC	2 cut(s)	205, 503
Eco32I	GATATC	2 cut(s)	390, 771
Eco47I	GGWCC	1 cut(s)	991
Eco57I	CTGAAG	2 cut(s)	1089, 1127
Eco88I	CYCGRG	2 cut(s)	411, 687
EcoNI	CCTNNNNNAGG	1 cut(s)	54
EcoRII	CCWGG	4 cut(s)	318, 339, 501, 864
EcoRV	GATATC	2 cut(s)	390, 771
FaeI	CATG	7 cut(s)	284, 445, 458, 793, 916, 929, 1055
FaqI	GGGAC	2 cut(s)	589, 634
FatI	CATG	7 cut(s)	280, 441, 454, 789, 912, 925, 1051
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	3 cut(s)	155, 351, 1110
FokI	GGATG	4 cut(s)	260, 522, 653, 1151
Fsp4HI	GCNGC	3 cut(s)	155, 351, 1110
FspBI	CTAG	3 cut(s)	117, 399, 762
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	3 cut(s)	155, 351, 1110
HaeII	RGCGCY	1 cut(s)	20
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	2 cut(s)	27, 412
HgaI	GACGC	1 cut(s)	686
HhaI	GCGC	1 cut(s)	19
Hin1II	CATG	7 cut(s)	284, 445, 458, 793, 916, 929, 1055
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HinfI	GANTC	8 cut(s)	431, 471, 493, 614, 710, 718, 745, 1079
HpaII	CCGG	2 cut(s)	27, 412
HphI	GGTGA	2 cut(s)	494, 1153
Hpy166II	GTNNAC	2 cut(s)	114, 704
Hpy188I	TCNGA	5 cut(s)	214, 667, 846, 1078, 1146
Hpy188III	TCNNGA	6 cut(s)	281, 497, 689, 749, 877, 913
Hpy8I	GTNNAC	2 cut(s)	114, 704
Hpy99I	CGWCG	1 cut(s)	702
HpyAV	CCTTC	3 cut(s)	50, 410, 540
HpyCH4III	ACNGT	1 cut(s)	1185
HpyCH4IV	ACGT	1 cut(s)	227
HpyCH4V	TGCA	5 cut(s)	135, 154, 256, 325, 755
HpyF3I	CTNAG	2 cut(s)	843, 987
HpySE526I	ACGT	1 cut(s)	227
Hsp92II	CATG	7 cut(s)	284, 445, 458, 793, 916, 929, 1055
HspAI	GCGC	1 cut(s)	17
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	4 cut(s)	76, 173, 358, 1028
Lsp1109I	GCAGC	3 cut(s)	166, 337, 1096
LweI	GCATC	1 cut(s)	742
MaeI	CTAG	3 cut(s)	117, 399, 762
MaeII	ACGT	1 cut(s)	227
MaeIII	GTNAC	3 cut(s)	32, 482, 556
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	6 cut(s)	281, 397, 518, 976, 1133, 1165
MlsI	TGGCCA	1 cut(s)	318
MluCI	AATT	6 cut(s)	76, 475, 520, 564, 676, 897
MluNI	TGGCCA	1 cut(s)	318
MlyI	GAGTC	3 cut(s)	502, 704, 754
MmeI	TCCRAC	2 cut(s)	563, 746
MnlI	CCTC	8 cut(s)	76, 238, 286, 982, 1047, 1178, 1181, 1187
Mox20I	TGGCCA	1 cut(s)	318
MscI	TGGCCA	1 cut(s)	318
MseI	TTAA	4 cut(s)	260, 519, 785, 1014
MslI	CAYNNNNRTG	1 cut(s)	285
Msp20I	TGGCCA	1 cut(s)	318
MspA1I	CMGCKG	1 cut(s)	1109
MspI	CCGG	2 cut(s)	27, 412
MspR9I	CCNGG	6 cut(s)	320, 341, 412, 413, 503, 866
Mva1269I	GAATGC	1 cut(s)	176
MvaI	CCWGG	4 cut(s)	320, 341, 503, 866
NciI	CCSGG	2 cut(s)	412, 413
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	7 cut(s)	284, 445, 458, 793, 916, 929, 1055
NlaIV	GGNNCC	1 cut(s)	48
NmuCI	GTSAC	2 cut(s)	32, 482
PaeR7I	CTCGAG	1 cut(s)	687
PagI	TCATGA	2 cut(s)	280, 912
PcsI	WCGNNNNNNNCGW	1 cut(s)	694
PctI	GAATGC	1 cut(s)	176
PfeI	GAWTC	5 cut(s)	431, 471, 614, 718, 1079
PfoI	TCCNGGA	1 cut(s)	339
PkrI	GCNGC	3 cut(s)	156, 352, 1111
PleI	GAGTC	3 cut(s)	501, 704, 753
PpsI	GAGTC	3 cut(s)	501, 704, 753
PsiI	TTATAA	1 cut(s)	525
Psp6I	CCWGG	4 cut(s)	318, 339, 501, 864
PspGI	CCWGG	4 cut(s)	318, 339, 501, 864
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	991
PsrI	GAACNNNNNNTAC	2 cut(s)	234, 266
PvuII	CAGCTG	1 cut(s)	1109
RseI	CAYNNNNRTG	1 cut(s)	285
SaqAI	TTAA	4 cut(s)	260, 519, 785, 1014
SatI	GCNGC	3 cut(s)	155, 351, 1110
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	1 cut(s)	991
SchI	GAGTC	3 cut(s)	502, 704, 754
ScrFI	CCNGG	6 cut(s)	320, 341, 412, 413, 503, 866
SfaNI	GCATC	1 cut(s)	742
SfcI	CTRYAG	1 cut(s)	1126
Sfr274I	CTCGAG	1 cut(s)	687
SinI	GGWCC	1 cut(s)	991
SlaI	CTCGAG	1 cut(s)	687
SmaI	CCCGGG	1 cut(s)	413
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	2 cut(s)	687, 712
SmoI	CTYRAG	2 cut(s)	687, 712
Sse9I	AATT	6 cut(s)	76, 475, 520, 564, 676, 897
SsiI	CCGC	1 cut(s)	426
SspI	AATATT	1 cut(s)	731
SspMI	CTAG	3 cut(s)	117, 399, 762
StyD4I	CCNGG	6 cut(s)	318, 339, 410, 411, 501, 864
TaaI	ACNGT	1 cut(s)	1185
TaiI	ACGT	1 cut(s)	230
TaqI	TCGA	1 cut(s)	688
TasI	AATT	6 cut(s)	76, 475, 520, 564, 676, 897
TfiI	GAWTC	5 cut(s)	431, 471, 614, 718, 1079
Tru1I	TTAA	4 cut(s)	260, 519, 785, 1014
Tru9I	TTAA	4 cut(s)	260, 519, 785, 1014
TscAI	CASTG	4 cut(s)	37, 559, 607, 991
TseFI	GTSAC	2 cut(s)	32, 482
TseI	GCWGC	3 cut(s)	154, 350, 1109
Tsp45I	GTSAC	2 cut(s)	32, 482
TspDTI	ATGAA	5 cut(s)	17, 297, 324, 806, 901
TspGWI	ACGGA	1 cut(s)	119
TspMI	CCCGGG	1 cut(s)	411
TspRI	CASTG	4 cut(s)	37, 559, 607, 991
VpaK11BI	GGWCC	1 cut(s)	991
XagI	CCTNNNNNAGG	1 cut(s)	54
XcmI	CCANNNNNNNNNTGG	1 cut(s)	326
XhoI	CTCGAG	1 cut(s)	687
XmaI	CCCGGG	1 cut(s)	411
XspI	CTAG	3 cut(s)	117, 399, 762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.