FvH4_1g11181

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
6105179 .. 6108859
3681 bp
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UTR
Exon/CDS
Intron
FvH4_1g11181.t2

Sequence Viewer

Length: 1518 bp
ATGCTTAAGCTCAACTTCATCTTCCTCCTTTTCCCATCAATCCTGACCCTTCTTCTTCCCACCTGCGACGGCCGCGTCTTCAGCTTCGAGATGCACCACCGCTATTCCGACCCCGTCAAGCAGTGGTCGGAGGTCGCCGGAAAGCTCTCTCCGGCCGCCACCAACCTCCTCCCGGAAAAGGGTAGCTTCGAGTACTACGCCGAACTCGCCAACCGCGACCGCCTCCTCCGCGGCCGCAAGCTCGTCGAATCTTCCGACACCCTCGCCTTCTCCGACGGCAACTCCACTTTTCAGATCACCTCTTTGGGATATTTGCATTATACGACAGTGCAATTGGGGACGCCGGGAATGAAGTTCATGGTGGCGCTCGATACCGGGAGTGACCTGTTTTGGGTGCCTTGTGAAGGAACTGCTTATGCTCCTAATTTCGAGGTCAGCAAATATGACCCTAAAGGATCATCGACTAGCAAGATAGTCCGTTGCAACAACAGGTTGTGTATGCAGCGTAATAAATGTCTGGGAGCGTCCAACACTTGCCCTTATAGGGTGTCTTATGTCTCTGATCAGACTTCTACTTCTGGGATATTGGTAGAGGATGTTCTGCACTTAACAACAGAAGATAGTCATCATGAATATGTTGAGGCATACATTACCTTTGGCTGTGGACAGGTTCAAAGTGGTTCATTCCTGGATATTGCTGCTCCTAATGGTCTGTTTGGTCTTGGTATGGAGAAGATATCTGTTCCTAGCATTTTATCCCGGGAAGGCTTTACCGCAGATTCCTTTTCCATGTGTTTTGGACATGATGGAGTTGGGAGAATCAACTTTGGTGACAAGGGGAGTCCTGACCAGGAAGAAACCCCATTTAATTATGACCCTTCACATCCAACCTACAACATCAGTGTAACTCAAATTAGAGTGGGGGCAGATATTATGGACATTGATCTCACTGCGCTCTTTGATTCTGGGACTTCTTTCACATATTTGGATGACCCAACTTATACAAGGATTTCAGAGAGTTTCAATTCACAAGCTCAAGATAAGCGTCGTCCACCTGACTCAAGGATTCCATTTAAATATTGTTATGATATGAGTCCTGATGCAAATGCTAGTTGGATATCTGGTGTCAGTTTAACCATGAAAGGTGGAAGCCAGTTTGAAGTATATAATCCAATCATTGTTATCTCAGCTGGGAGCGGTCTGGTCTATTGCCTTGCTGTTGTCAAGAGCTTGGAACTAAATATAATTGGACGCTACCATGTTGTATTTGACAGAGAGAAAAAGGTCTTGGGCTGGAAGAATCTTGACTGCTATGACACTGAGGACCATCATACTTACTTACCTTTTAAACCACGCTCCTACAGTGTCCCTCCTTTTGCTCATGGACTACGTAACCATTCTATTTCAGAATCAGCGAAAAATACCAGCTCGAATTCAGCTTCTTCTGTGCCTTACTATAGTCATACCTCTCTTCTGACTTGCTTTCTATTCACCGTCCTCCTCTTCCTATCACTGTAA

Protein Analysis

506

Amino Acids

56.16

Weight (kDa)

5.7

Isoelectric Point (pI)

37.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 107 - 278 7.8e-36 Xylanase inhibitor N-terminal
Asp PF00026 107 - 436 5.5e-23 Eukaryotic aspartyl protease
TAXi_C PF14541 298 - 438 4.6e-16 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 71
AasI GACNNNNNNGTC 1 cut(s) 74
Acc36I ACCTGC 1 cut(s) 71
AccB1I GGYRCC 1 cut(s) 394
AccBSI CCGCTC 1 cut(s) 1197
AccII CGCG 3 cut(s) 75, 216, 231
AclWI GGATC 1 cut(s) 463
AcoI YGGCCR 3 cut(s) 70, 153, 232
AcsI RAATTY 1 cut(s) 1432
AcuI CTGAAG 1 cut(s) 64
AcyI GRCGYC 1 cut(s) 341
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 6 cut(s) 172, 178, 179, 391, 404, 544
AflII CTTAAG 1 cut(s) 5
AgsI TTSAA 3 cut(s) 674, 1024, 1160
AjnI CCWGG 2 cut(s) 687, 849
AjuI GAANNNNNNNTTGG 2 cut(s) 1271, 1303
Alw26I GTCTC 1 cut(s) 562
AlwI GGATC 1 cut(s) 463
Ama87I CYCGRG 1 cut(s) 759
AoxI GGCC 3 cut(s) 70, 153, 232
ApeKI GCWGC 2 cut(s) 502, 698
ApoI RAATTY 1 cut(s) 1432
AspLEI GCGC 2 cut(s) 367, 955
AspS9I GGNCC 1 cut(s) 1324
AsuC2I CCSGG 5 cut(s) 173, 345, 376, 760, 761
AsuHPI GGTGA 3 cut(s) 289, 842, 1483
AvaI CYCGRG 1 cut(s) 759
AvaII GGWCC 1 cut(s) 1324
BanI GGYRCC 1 cut(s) 394
BbsI GAAGAC 1 cut(s) 70
BbvI GCAGC 2 cut(s) 514, 685
BccI CCATC 3 cut(s) 43, 800, 1335
BceAI ACGGC 2 cut(s) 85, 292
BcgI CGANNNNNNTGC 2 cut(s) 226, 260
BciT130I CCWGG 2 cut(s) 689, 851
BclI TGATCA 1 cut(s) 562
BcnI CCSGG 5 cut(s) 173, 345, 376, 760, 761
BcoDI GTCTC 1 cut(s) 562
BfaI CTAG 3 cut(s) 465, 747, 1110
BfmI CTRYAG 2 cut(s) 1360, 1456
BfoI RGCGCY 1 cut(s) 368
BfrI CTTAAG 1 cut(s) 5
BfuAI ACCTGC 1 cut(s) 71
BisI GCNGC 6 cut(s) 73, 156, 232, 235, 503, 699
BlsI GCNGC 6 cut(s) 74, 157, 233, 236, 504, 700
BmcAI AGTACT 1 cut(s) 194
Bme1390I CCNGG 7 cut(s) 173, 345, 376, 689, 760, 761, 851
Bme18I GGWCC 1 cut(s) 1324
BmeT110I CYCGRG 1 cut(s) 759
BmgT120I GGNCC 1 cut(s) 1324
BmiI GGNNCC 1 cut(s) 396
BmrFI CCNGG 7 cut(s) 173, 345, 376, 689, 760, 761, 851
BmsI GCATC 2 cut(s) 81, 1090
BpiI GAAGAC 1 cut(s) 70
BpuEI CTTGAG 2 cut(s) 1020, 1045
BpuMI CCSGG 5 cut(s) 173, 345, 376, 760, 761
BsaAI YACGTR 1 cut(s) 1391
BsaBI GATNNNNATC 1 cut(s) 624
BsaHI GRCGYC 1 cut(s) 341
BsaJI CCNNGG 2 cut(s) 229, 759
BsaXI ACNNNNNCTCC 2 cut(s) 266, 296
Bsc4I CCNNNNNNNGG 6 cut(s) 172, 178, 179, 391, 404, 544
Bse1I ACTGG 1 cut(s) 1153
Bse8I GATNNNNATC 1 cut(s) 624
BseBI CCWGG 2 cut(s) 689, 851
BseDI CCNNGG 2 cut(s) 229, 759
BseGI GGATG 3 cut(s) 601, 883, 994
BseJI GATNNNNATC 1 cut(s) 624
BseLI CCNNNNNNNGG 6 cut(s) 172, 178, 179, 391, 404, 544
BseMII CTCAG 2 cut(s) 1200, 1311
BseNI ACTGG 1 cut(s) 1153
BseRI GAGGAG 3 cut(s) 158, 215, 1490
BseX3I CGGCCG 3 cut(s) 70, 153, 232
BseXI GCAGC 2 cut(s) 514, 685
BseYI CCCAGC 1 cut(s) 1190
BsgI GTGCAG 1 cut(s) 587
Bsh1236I CGCG 3 cut(s) 75, 216, 231
Bsh1285I CGRYCG 4 cut(s) 73, 156, 220, 235
BshFI GGCC 3 cut(s) 72, 155, 234
BshNI GGYRCC 1 cut(s) 394
BsiEI CGRYCG 4 cut(s) 73, 156, 220, 235
BsiHKCI CYCGRG 1 cut(s) 759
BsiSI CCGG 6 cut(s) 138, 152, 173, 344, 375, 760
BslFI GGGAC 3 cut(s) 352, 982, 1352
BslI CCNNNNNNNGG 6 cut(s) 172, 178, 179, 391, 404, 544
BsmAI GTCTC 1 cut(s) 562
BsmFI GGGAC 3 cut(s) 352, 982, 1352
BsnI GGCC 3 cut(s) 72, 155, 234
BsoBI CYCGRG 1 cut(s) 759
Bsp143I GATC 4 cut(s) 294, 455, 562, 943
BspANI GGCC 3 cut(s) 72, 155, 234
BspCNI CTCAG 2 cut(s) 1199, 1312
BspFNI CGCG 3 cut(s) 75, 216, 231
BspHI TCATGA 1 cut(s) 628
BspLI GGNNCC 1 cut(s) 396
BspMI ACCTGC 1 cut(s) 71
BspPI GGATC 1 cut(s) 463
BspT107I GGYRCC 1 cut(s) 394
BspTI CTTAAG 1 cut(s) 5
BsrBI CCGCTC 1 cut(s) 1197
BsrI ACTGG 1 cut(s) 1153
BssECI CCNNGG 2 cut(s) 229, 759
BssMI GATC 4 cut(s) 294, 455, 562, 943
BssNI GRCGYC 1 cut(s) 341
Bst2UI CCWGG 2 cut(s) 689, 851
Bst4CI ACNGT 4 cut(s) 328, 1364, 1495, 1515
Bst6I CTCTTC 2 cut(s) 1476, 1508
BstACI GRCGYC 1 cut(s) 341
BstAFI CTTAAG 1 cut(s) 5
BstBAI YACGTR 1 cut(s) 1391
BstC8I GCNNGC 1 cut(s) 239
BstDEI CTNAG 2 cut(s) 1186, 1320
BstDSI CCRYGG 1 cut(s) 229
BstENI CCTNNNNNAGG 1 cut(s) 402
BstF5I GGATG 3 cut(s) 601, 883, 994
BstFNI CGCG 3 cut(s) 75, 216, 231
BstH2I RGCGCY 1 cut(s) 368
BstHHI GCGC 2 cut(s) 367, 955
BstKTI GATC 4 cut(s) 297, 458, 565, 946
BstMAI GTCTC 1 cut(s) 562
BstMBI GATC 4 cut(s) 294, 455, 562, 943
BstMCI CGRYCG 4 cut(s) 73, 156, 220, 235
BstMWI GCNNNNNNNGC 4 cut(s) 72, 81, 206, 228
BstNI CCWGG 2 cut(s) 689, 851
BstSCI CCNGG 7 cut(s) 171, 343, 374, 687, 758, 759, 849
BstSFI CTRYAG 2 cut(s) 1360, 1456
BstSNI TACGTA 1 cut(s) 1391
BstUI CGCG 3 cut(s) 75, 216, 231
BstV1I GCAGC 2 cut(s) 514, 685
BstV2I GAAGAC 1 cut(s) 70
BstZI CGGCCG 3 cut(s) 70, 153, 232
BsuRI GGCC 3 cut(s) 72, 155, 234
BtgI CCRYGG 1 cut(s) 229
BtsCI GGATG 3 cut(s) 601, 883, 994
BtsI GCAGTG 2 cut(s) 128, 948
BtsIMutI CAGTG 7 cut(s) 128, 333, 907, 948, 1317, 1369, 1511
BveI ACCTGC 1 cut(s) 71
Cac8I GCNNGC 1 cut(s) 239
CciI TCATGA 1 cut(s) 628
CciNI GCGGCCGC 1 cut(s) 232
CfoI GCGC 2 cut(s) 367, 955
Cfr13I GGNCC 1 cut(s) 1324
Cfr42I CCGCGG 1 cut(s) 232
Cfr9I CCCGGG 1 cut(s) 759
CseI GACGC 5 cut(s) 64, 349, 513, 1034, 1260
Csp6I GTAC 1 cut(s) 193
CviAII CATG 7 cut(s) 358, 629, 790, 803, 1138, 1259, 1382
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 2 cut(s) 1186, 1320
DpnI GATC 4 cut(s) 296, 457, 564, 945
DpnII GATC 4 cut(s) 294, 455, 562, 943
DraI TTTAAA 2 cut(s) 1075, 1348
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
EaeI YGGCCR 3 cut(s) 70, 153, 232
EagI CGGCCG 3 cut(s) 70, 153, 232
Eam1104I CTCTTC 2 cut(s) 1476, 1508
EarI CTCTTC 2 cut(s) 1476, 1508
EclXI CGGCCG 3 cut(s) 70, 153, 232
Eco105I TACGTA 1 cut(s) 1391
Eco32I GATATC 2 cut(s) 738, 1119
Eco47I GGWCC 1 cut(s) 1324
Eco52I CGGCCG 3 cut(s) 70, 153, 232
Eco57I CTGAAG 1 cut(s) 64
Eco88I CYCGRG 1 cut(s) 759
EcoNI CCTNNNNNAGG 1 cut(s) 402
EcoRI GAATTC 1 cut(s) 1432
EcoRII CCWGG 2 cut(s) 687, 849
EcoRV GATATC 2 cut(s) 738, 1119
FaeI CATG 7 cut(s) 361, 632, 793, 806, 1141, 1262, 1385
FalI AAGNNNNNCTT 3 cut(s) 31, 170, 202
FaqI GGGAC 3 cut(s) 352, 982, 1352
FatI CATG 7 cut(s) 357, 628, 789, 802, 1137, 1258, 1381
FbaI TGATCA 1 cut(s) 562
Fnu4HI GCNGC 6 cut(s) 73, 156, 232, 235, 503, 699
FokI GGATG 3 cut(s) 608, 870, 1001
Fsp4HI GCNGC 6 cut(s) 73, 156, 232, 235, 503, 699
FspBI CTAG 3 cut(s) 465, 747, 1110
GlaI GCGC 2 cut(s) 366, 954
GluI GCNGC 6 cut(s) 73, 156, 232, 235, 503, 699
GsaI CCCAGC 1 cut(s) 1194
HaeII RGCGCY 1 cut(s) 368
HaeIII GGCC 3 cut(s) 72, 155, 234
HapII CCGG 6 cut(s) 138, 152, 173, 344, 375, 760
HgaI GACGC 5 cut(s) 64, 349, 513, 1034, 1260
HhaI GCGC 2 cut(s) 367, 955
Hin1I GRCGYC 1 cut(s) 341
Hin1II CATG 7 cut(s) 361, 632, 793, 806, 1141, 1262, 1385
Hin6I GCGC 2 cut(s) 365, 953
HinP1I GCGC 2 cut(s) 365, 953
HpaII CCGG 6 cut(s) 138, 152, 173, 344, 375, 760
HphI GGTGA 3 cut(s) 289, 842, 1483
Hpy166II GTNNAC 2 cut(s) 665, 1052
Hpy188III TCNNGA 8 cut(s) 43, 88, 629, 845, 1037, 1097, 1225, 1304
Hpy8I GTNNAC 2 cut(s) 665, 1052
Hpy99I CGWCG 4 cut(s) 71, 248, 278, 1050
HpyAV CCTTC 5 cut(s) 59, 277, 398, 758, 888
HpyCH4III ACNGT 4 cut(s) 328, 1364, 1495, 1515
HpyCH4IV ACGT 1 cut(s) 1390
HpyCH4V TGCA 7 cut(s) 94, 316, 331, 483, 502, 604, 1103
HpyF10VI GCNNNNNNNGC 4 cut(s) 72, 81, 206, 228
HpyF3I CTNAG 2 cut(s) 1186, 1320
HpySE526I ACGT 1 cut(s) 1390
Hsp92I GRCGYC 1 cut(s) 341
Hsp92II CATG 7 cut(s) 361, 632, 793, 806, 1141, 1262, 1385
HspAI GCGC 2 cut(s) 365, 953
Ksp22I TGATCA 1 cut(s) 562
KspI CCGCGG 1 cut(s) 232
Kzo9I GATC 4 cut(s) 294, 455, 562, 943
LmnI GCTCC 5 cut(s) 424, 521, 706, 1194, 1361
Lsp1109I GCAGC 2 cut(s) 514, 685
LweI GCATC 2 cut(s) 81, 1090
MaeI CTAG 3 cut(s) 465, 747, 1110
MaeII ACGT 1 cut(s) 1390
MaeIII GTNAC 4 cut(s) 380, 830, 904, 1391
MalI GATC 4 cut(s) 296, 457, 564, 945
MbiI CCGCTC 1 cut(s) 1197
MboI GATC 4 cut(s) 294, 455, 562, 943
MfeI CAATTG 1 cut(s) 332
MluCI AATT 7 cut(s) 332, 424, 868, 912, 1024, 1245, 1432
MlyI GAGTC 3 cut(s) 850, 1052, 1102
MmeI TCCRAC 7 cut(s) 108, 132, 279, 297, 552, 911, 1094
MseI TTAA 6 cut(s) 6, 608, 867, 1074, 1133, 1347
MslI CAYNNNNRTG 1 cut(s) 633
MspA1I CMGCKG 2 cut(s) 231, 1190
MspCI CTTAAG 1 cut(s) 5
MspI CCGG 6 cut(s) 138, 152, 173, 344, 375, 760
MspR9I CCNGG 7 cut(s) 173, 345, 376, 689, 760, 761, 851
MunI CAATTG 1 cut(s) 332
MvaI CCWGG 2 cut(s) 689, 851
MvnI CGCG 3 cut(s) 75, 216, 231
MwoI GCNNNNNNNGC 4 cut(s) 72, 81, 206, 228
NciI CCSGG 5 cut(s) 173, 345, 376, 760, 761
NdeII GATC 4 cut(s) 294, 455, 562, 943
NlaIII CATG 7 cut(s) 361, 632, 793, 806, 1141, 1262, 1385
NlaIV GGNNCC 1 cut(s) 396
NmuCI GTSAC 2 cut(s) 380, 830
NotI GCGGCCGC 1 cut(s) 232
PagI TCATGA 1 cut(s) 628
PaqCI CACCTGC 1 cut(s) 71
PcsI WCGNNNNNNNCGW 3 cut(s) 213, 252, 270
PfeI GAWTC 7 cut(s) 248, 779, 819, 962, 1066, 1300, 1409
PflFI GACNNNGTC 1 cut(s) 113
PfoI TCCNGGA 2 cut(s) 171, 687
PkrI GCNGC 6 cut(s) 74, 157, 233, 236, 504, 700
PleI GAGTC 3 cut(s) 849, 1052, 1101
PpsI GAGTC 3 cut(s) 849, 1052, 1101
Ppu21I YACGTR 1 cut(s) 1391
Psp6I CCWGG 2 cut(s) 687, 849
PspFI CCCAGC 1 cut(s) 1190
PspGI CCWGG 2 cut(s) 687, 849
PspN4I GGNNCC 1 cut(s) 396
PspPI GGNCC 1 cut(s) 1324
PsrI GAACNNNNNNTAC 2 cut(s) 582, 614
PsyI GACNNNGTC 1 cut(s) 113
PvuII CAGCTG 1 cut(s) 1190
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
RseI CAYNNNNRTG 1 cut(s) 633
SacII CCGCGG 1 cut(s) 232
SaqAI TTAA 6 cut(s) 6, 608, 867, 1074, 1133, 1347
SatI GCNGC 6 cut(s) 73, 156, 232, 235, 503, 699
Sau3AI GATC 4 cut(s) 294, 455, 562, 943
Sau96I GGNCC 1 cut(s) 1324
ScaI AGTACT 1 cut(s) 194
SchI GAGTC 3 cut(s) 850, 1052, 1102
ScrFI CCNGG 7 cut(s) 173, 345, 376, 689, 760, 761, 851
SfaNI GCATC 2 cut(s) 81, 1090
SfcI CTRYAG 2 cut(s) 1360, 1456
Sfr303I CCGCGG 1 cut(s) 232
SgrBI CCGCGG 1 cut(s) 232
SinI GGWCC 1 cut(s) 1324
SmaI CCCGGG 1 cut(s) 761
SmiI ATTTAAAT 1 cut(s) 1075
SmiMI CAYNNNNRTG 1 cut(s) 633
SmlI CTYRAG 3 cut(s) 5, 1035, 1060
SmoI CTYRAG 3 cut(s) 5, 1035, 1060
SnaBI TACGTA 1 cut(s) 1391
Sse9I AATT 7 cut(s) 332, 424, 868, 912, 1024, 1245, 1432
SspI AATATT 1 cut(s) 1079
SspMI CTAG 3 cut(s) 465, 747, 1110
StyD4I CCNGG 7 cut(s) 171, 343, 374, 687, 758, 759, 849
SwaI ATTTAAAT 1 cut(s) 1075
TaaI ACNGT 4 cut(s) 328, 1364, 1495, 1515
TaiI ACGT 1 cut(s) 1393
TaqI TCGA 7 cut(s) 87, 189, 246, 369, 429, 461, 1430
TasI AATT 7 cut(s) 332, 424, 868, 912, 1024, 1245, 1432
TatI WGTACW 1 cut(s) 192
TauI GCSGC 4 cut(s) 75, 158, 234, 237
TfiI GAWTC 7 cut(s) 248, 779, 819, 962, 1066, 1300, 1409
Tru1I TTAA 6 cut(s) 6, 608, 867, 1074, 1133, 1347
Tru9I TTAA 6 cut(s) 6, 608, 867, 1074, 1133, 1347
TscAI CASTG 7 cut(s) 128, 333, 907, 955, 1324, 1369, 1518
TseFI GTSAC 2 cut(s) 380, 830
TseI GCWGC 2 cut(s) 502, 698
Tsp45I GTSAC 2 cut(s) 380, 830
TspDTI ATGAA 6 cut(s) 7, 346, 365, 645, 672, 1154
TspGWI ACGGA 1 cut(s) 467
TspMI CCCGGG 1 cut(s) 759
TspRI CASTG 7 cut(s) 128, 333, 907, 955, 1324, 1369, 1518
Tth111I GACNNNGTC 1 cut(s) 113
Vha464I CTTAAG 1 cut(s) 5
VpaK11BI GGWCC 1 cut(s) 1324
XagI CCTNNNNNAGG 1 cut(s) 402
XapI RAATTY 1 cut(s) 1432
XmaI CCCGGG 1 cut(s) 759
XspI CTAG 3 cut(s) 465, 747, 1110
ZrmI AGTACT 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.