Rh2AG120900

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
10915223 .. 10918684
3462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG120900.1

Sequence Viewer

Length: 1293 bp
ATGCCTACTCTTCGTAAGCTCGCCTCCAACTCCCTCGTTTTCCCATCAATCTTCTTGACCCTTCTTCTTCTTCTTCTTCTTCCCAGCTGCGACGGCCGCGTCTTCAGCTTCGAGATGCACCACCGCTTCTCCGACCCCGTCAAGCAGTGGTCGGAGGCCGCCGGAAAGCTCTCTCCGGTTGCCGCCACCAACCTCCCCGAGAAGGGCAGCTTCGAGTACTACGCCGAACTCGCCAACCGCGACCGCCTCCTCCGCGGCCGCAAGCTCGTCGAGTCCACCGACACCCTCGCTTTCTCCGACGGCAACTCCACTTTTCAGATCACCTCTTTGGGATATTTGCATTACACGACGGTGCAACTGGGGACGCCGGGAATGAAGTTTATGGTGGCGCTTGATACCGGGAGTGACCTGTTTTGGGTGCCTTGTGAAGGAACAGCTTATGCTCCTAATTTCGAGGTCAGCAAATATGACCCCAAAGGGTCATCGACTAGCAAGAAAGTCCGTTGCAATAACAGGTTGTGTATGCAGCGTAATAAATGTCTGGGAGCATTCAACTCTTGCCCTTATAGGGTCTCTTATGTCTCTGATCAGACTTCTACGTCTGGGATATTAGTGGAGGATGTTCTGCATTTAACAACGGAAGATAGCCATCACGAATATGTTGAGGCATACATTACCTTTGGTTGTGGCCAGGTGCAAAGTGGTTCATTCCTGGATATTGCTGCTCCTAATGGTTTGTTTGGTCTTGGTATGGAGAAGATATCTGTTCCTAGCATTTTATCCCGGGAAGGCTTTACCGCAGATTCCTTTTCCATGTGTTTTGGACATGATGGAGTTGGGAGAATCAATTTTGGTGACAAGGGGAGTCCTGACCAGGAAGAGACCCCATTTAATTATAACCCTTCACATCCAACCTACAACATCAGTGTAACTCAAATTAGAGTGGGGACAGATATTATGGACATTGATTTCACTGCTCTTTTTGATTCTGGGACTTCTTTCACATATCTGGATGACCCAACTTATACAAGGATTTCAGAGAGTTTCAATTCACAAGCTCGAGATAAGCGTCATCCACCTGACTCAAGGATTCCATTTGAATATTGTTATGATATGAGTCCAGATGCAAATGCTAGTTGGATATCTGGTGTCAGTTTAACCATGAAAGGTGGAAGCCAGTTTGAAGTATATAATCCAATCGTTGTTATCTCCACTCAGAGCGAGCTGGTCTATTGCCTGGCTGTTGTCAAGAGTTTGGAACTAAATATAATTGGACGTAAGTCTTCTTCATAG

Protein Analysis

430

Amino Acids

47.57

Weight (kDa)

5.34

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 115 - 286 1.4e-35 Xylanase inhibitor N-terminal
Asp PF00026 115 - 425 1.5e-17 Eukaryotic aspartyl protease
TAXi_C PF14541 306 - 423 1.7e-11 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 897
AasI GACNNNNNNGTC 2 cut(s) 98, 598
AccB1I GGYRCC 1 cut(s) 418
AccII CGCG 3 cut(s) 99, 240, 255
AcoI YGGCCR 3 cut(s) 94, 256, 688
AcuI CTGAAG 1 cut(s) 88
AcyI GRCGYC 1 cut(s) 365
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 5 cut(s) 202, 203, 415, 428, 568
AgsI TTSAA 4 cut(s) 553, 1048, 1100, 1184
AjnI CCWGG 4 cut(s) 690, 711, 873, 1236
AleI CACNNNNGTG 1 cut(s) 350
AluBI AGCT 9 cut(s) 19, 87, 108, 169, 210, 265, 437, 1058, 1225
AluI AGCT 9 cut(s) 19, 87, 108, 169, 210, 265, 437, 1058, 1225
Alw26I GTCTC 3 cut(s) 577, 586, 875
Ama87I CYCGRG 3 cut(s) 197, 783, 1059
AoxI GGCC 4 cut(s) 94, 156, 256, 688
ApeKI GCWGC 4 cut(s) 87, 207, 526, 722
AspLEI GCGC 1 cut(s) 391
AsuC2I CCSGG 4 cut(s) 369, 400, 784, 785
AsuHPI GGTGA 2 cut(s) 313, 866
AvaI CYCGRG 3 cut(s) 197, 783, 1059
BalI TGGCCA 1 cut(s) 690
BanI GGYRCC 1 cut(s) 418
BarI GAAGNNNNNNTAC 1 cut(s) 1270
BbsI GAAGAC 2 cut(s) 94, 1275
BbvI GCAGC 4 cut(s) 74, 219, 538, 709
BccI CCATC 3 cut(s) 52, 657, 824
BceAI ACGGC 2 cut(s) 109, 316
BcgI CGANNNNNNTGC 2 cut(s) 250, 284
BciT130I CCWGG 4 cut(s) 692, 713, 875, 1238
BclI TGATCA 1 cut(s) 586
BcnI CCSGG 4 cut(s) 369, 400, 784, 785
BcoDI GTCTC 3 cut(s) 577, 586, 875
BfaI CTAG 3 cut(s) 489, 771, 1134
BfoI RGCGCY 1 cut(s) 392
BisI GCNGC 9 cut(s) 88, 97, 159, 183, 208, 256, 259, 527, 723
BlsI GCNGC 9 cut(s) 89, 98, 160, 184, 209, 257, 260, 528, 724
BmcAI AGTACT 1 cut(s) 218
Bme1390I CCNGG 8 cut(s) 369, 400, 692, 713, 784, 785, 875, 1238
BmeT110I CYCGRG 3 cut(s) 197, 783, 1059
BmiI GGNNCC 1 cut(s) 420
BmrFI CCNGG 8 cut(s) 369, 400, 692, 713, 784, 785, 875, 1238
BmrI ACTGGG 1 cut(s) 368
BmsI GCATC 2 cut(s) 105, 1114
BmuI ACTGGG 1 cut(s) 368
BoxI GACNNNNGTC 1 cut(s) 1279
BpiI GAAGAC 2 cut(s) 94, 1275
BpuEI CTTGAG 1 cut(s) 1069
BpuMI CCSGG 4 cut(s) 369, 400, 784, 785
BsaBI GATNNNNATC 1 cut(s) 648
BsaHI GRCGYC 1 cut(s) 365
BsaI GGTCTC 2 cut(s) 577, 875
BsaJI CCNNGG 2 cut(s) 253, 783
BsaWI WCCGGW 1 cut(s) 175
BsaXI ACNNNNNCTCC 4 cut(s) 113, 143, 290, 320
Bsc4I CCNNNNNNNGG 5 cut(s) 202, 203, 415, 428, 568
Bse1I ACTGG 2 cut(s) 363, 1177
Bse8I GATNNNNATC 1 cut(s) 648
BseBI CCWGG 4 cut(s) 692, 713, 875, 1238
BseDI CCNNGG 2 cut(s) 253, 783
BseGI GGATG 4 cut(s) 625, 907, 1018, 1072
BseJI GATNNNNATC 1 cut(s) 648
BseLI CCNNNNNNNGG 5 cut(s) 202, 203, 415, 428, 568
BseMII CTCAG 1 cut(s) 1229
BseNI ACTGG 2 cut(s) 363, 1177
BseRI GAGGAG 1 cut(s) 239
BseX3I CGGCCG 2 cut(s) 94, 256
BseXI GCAGC 4 cut(s) 74, 219, 538, 709
BseYI CCCAGC 1 cut(s) 83
Bsh1236I CGCG 3 cut(s) 99, 240, 255
Bsh1285I CGRYCG 3 cut(s) 97, 244, 259
BshFI GGCC 4 cut(s) 96, 158, 258, 690
BshNI GGYRCC 1 cut(s) 418
BsiEI CGRYCG 3 cut(s) 97, 244, 259
BsiHKCI CYCGRG 3 cut(s) 197, 783, 1059
BsiSI CCGG 5 cut(s) 162, 176, 368, 399, 784
BslFI GGGAC 3 cut(s) 376, 961, 1006
BslI CCNNNNNNNGG 5 cut(s) 202, 203, 415, 428, 568
BsmAI GTCTC 3 cut(s) 577, 586, 875
BsmFI GGGAC 3 cut(s) 376, 961, 1006
BsmI GAATGC 1 cut(s) 548
BsnI GGCC 4 cut(s) 96, 158, 258, 690
Bso31I GGTCTC 2 cut(s) 577, 875
BsoBI CYCGRG 3 cut(s) 197, 783, 1059
Bsp143I GATC 2 cut(s) 318, 586
BspANI GGCC 4 cut(s) 96, 158, 258, 690
BspCNI CTCAG 1 cut(s) 1228
BspFNI CGCG 3 cut(s) 99, 240, 255
BspLI GGNNCC 1 cut(s) 420
BspT107I GGYRCC 1 cut(s) 418
BspTNI GGTCTC 2 cut(s) 577, 875
BsrI ACTGG 2 cut(s) 363, 1177
BssECI CCNNGG 2 cut(s) 253, 783
BssMI GATC 2 cut(s) 318, 586
BssNI GRCGYC 1 cut(s) 365
Bst2UI CCWGG 4 cut(s) 692, 713, 875, 1238
Bst4CI ACNGT 1 cut(s) 352
Bst6I CTCTTC 2 cut(s) 15, 873
BstACI GRCGYC 1 cut(s) 365
BstC8I GCNNGC 3 cut(s) 21, 263, 1223
BstDEI CTNAG 1 cut(s) 1215
BstDSI CCRYGG 1 cut(s) 253
BstENI CCTNNNNNAGG 1 cut(s) 426
BstF5I GGATG 4 cut(s) 625, 907, 1018, 1072
BstFNI CGCG 3 cut(s) 99, 240, 255
BstH2I RGCGCY 1 cut(s) 392
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 2 cut(s) 321, 589
BstMAI GTCTC 3 cut(s) 577, 586, 875
BstMBI GATC 2 cut(s) 318, 586
BstMCI CGRYCG 3 cut(s) 97, 244, 259
BstMWI GCNNNNNNNGC 5 cut(s) 93, 96, 105, 230, 252
BstNI CCWGG 4 cut(s) 692, 713, 875, 1238
BstPAI GACNNNNGTC 1 cut(s) 1279
BstSCI CCNGG 8 cut(s) 367, 398, 690, 711, 782, 783, 873, 1236
BstUI CGCG 3 cut(s) 99, 240, 255
BstV1I GCAGC 4 cut(s) 74, 219, 538, 709
BstV2I GAAGAC 2 cut(s) 94, 1275
BstZI CGGCCG 2 cut(s) 94, 256
BsuRI GGCC 4 cut(s) 96, 158, 258, 690
BtgI CCRYGG 1 cut(s) 253
BtsCI GGATG 4 cut(s) 625, 907, 1018, 1072
BtsI GCAGTG 2 cut(s) 152, 972
BtsIMutI CAGTG 3 cut(s) 152, 931, 972
Cac8I GCNNGC 3 cut(s) 21, 263, 1223
CciNI GCGGCCGC 1 cut(s) 256
CfoI GCGC 1 cut(s) 391
Cfr42I CCGCGG 1 cut(s) 256
Cfr9I CCCGGG 1 cut(s) 783
CseI GACGC 3 cut(s) 88, 373, 1058
Csp6I GTAC 1 cut(s) 217
CviAII CATG 3 cut(s) 814, 827, 1162
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 1 cut(s) 1215
DpnI GATC 2 cut(s) 320, 588
DpnII GATC 2 cut(s) 318, 586
DrdI GACNNNNNNGTC 2 cut(s) 98, 598
DseDI GACNNNNNNGTC 2 cut(s) 98, 598
EaeI YGGCCR 3 cut(s) 94, 256, 688
EagI CGGCCG 2 cut(s) 94, 256
Eam1104I CTCTTC 2 cut(s) 15, 873
EarI CTCTTC 2 cut(s) 15, 873
EclXI CGGCCG 2 cut(s) 94, 256
Eco31I GGTCTC 2 cut(s) 577, 875
Eco32I GATATC 2 cut(s) 762, 1143
Eco52I CGGCCG 2 cut(s) 94, 256
Eco57I CTGAAG 1 cut(s) 88
Eco88I CYCGRG 3 cut(s) 197, 783, 1059
EcoNI CCTNNNNNAGG 1 cut(s) 426
EcoRII CCWGG 4 cut(s) 690, 711, 873, 1236
EcoRV GATATC 2 cut(s) 762, 1143
FaeI CATG 3 cut(s) 817, 830, 1165
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FaqI GGGAC 3 cut(s) 376, 961, 1006
FatI CATG 3 cut(s) 813, 826, 1161
FbaI TGATCA 1 cut(s) 586
Fnu4HI GCNGC 9 cut(s) 88, 97, 159, 183, 208, 256, 259, 527, 723
FokI GGATG 4 cut(s) 632, 894, 1025, 1059
Fsp4HI GCNGC 9 cut(s) 88, 97, 159, 183, 208, 256, 259, 527, 723
FspBI CTAG 3 cut(s) 489, 771, 1134
GlaI GCGC 1 cut(s) 390
GluI GCNGC 9 cut(s) 88, 97, 159, 183, 208, 256, 259, 527, 723
GsaI CCCAGC 1 cut(s) 87
HaeII RGCGCY 1 cut(s) 392
HaeIII GGCC 4 cut(s) 96, 158, 258, 690
HapII CCGG 5 cut(s) 162, 176, 368, 399, 784
HgaI GACGC 3 cut(s) 88, 373, 1058
HhaI GCGC 1 cut(s) 391
Hin1I GRCGYC 1 cut(s) 365
Hin1II CATG 3 cut(s) 817, 830, 1165
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HinfI GANTC 8 cut(s) 272, 803, 843, 865, 986, 1082, 1090, 1117
HpaII CCGG 5 cut(s) 162, 176, 368, 399, 784
HphI GGTGA 2 cut(s) 313, 866
Hpy166II GTNNAC 1 cut(s) 276
Hpy188I TCNGA 8 cut(s) 133, 154, 298, 318, 586, 591, 1039, 1218
Hpy188III TCNNGA 8 cut(s) 55, 112, 653, 869, 1010, 1061, 1121, 1249
Hpy8I GTNNAC 1 cut(s) 276
Hpy99I CGWCG 4 cut(s) 95, 272, 302, 352
HpyAV CCTTC 5 cut(s) 71, 196, 422, 782, 912
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4IV ACGT 2 cut(s) 599, 1276
HpyCH4V TGCA 8 cut(s) 118, 340, 355, 507, 526, 628, 697, 1127
HpyF10VI GCNNNNNNNGC 5 cut(s) 93, 96, 105, 230, 252
HpyF3I CTNAG 1 cut(s) 1215
HpySE526I ACGT 2 cut(s) 599, 1276
Hsp92I GRCGYC 1 cut(s) 365
Hsp92II CATG 3 cut(s) 817, 830, 1165
HspAI GCGC 1 cut(s) 389
Ksp22I TGATCA 1 cut(s) 586
KspI CCGCGG 1 cut(s) 256
Kzo9I GATC 2 cut(s) 318, 586
LmnI GCTCC 3 cut(s) 448, 545, 730
Lsp1109I GCAGC 4 cut(s) 74, 219, 538, 709
LweI GCATC 2 cut(s) 105, 1114
MaeI CTAG 3 cut(s) 489, 771, 1134
MaeII ACGT 2 cut(s) 599, 1276
MaeIII GTNAC 3 cut(s) 404, 854, 928
MalI GATC 2 cut(s) 320, 588
MboI GATC 2 cut(s) 318, 586
MlsI TGGCCA 1 cut(s) 690
MluCI AATT 6 cut(s) 448, 847, 892, 936, 1048, 1269
MluNI TGGCCA 1 cut(s) 690
MlyI GAGTC 4 cut(s) 281, 874, 1076, 1126
MmeI TCCRAC 6 cut(s) 51, 132, 156, 321, 935, 1118
Mox20I TGGCCA 1 cut(s) 690
MscI TGGCCA 1 cut(s) 690
MseI TTAA 3 cut(s) 632, 891, 1157
MslI CAYNNNNRTG 2 cut(s) 350, 657
Msp20I TGGCCA 1 cut(s) 690
MspA1I CMGCKG 2 cut(s) 87, 255
MspI CCGG 5 cut(s) 162, 176, 368, 399, 784
MspR9I CCNGG 8 cut(s) 369, 400, 692, 713, 784, 785, 875, 1238
Mva1269I GAATGC 1 cut(s) 548
MvaI CCWGG 4 cut(s) 692, 713, 875, 1238
MvnI CGCG 3 cut(s) 99, 240, 255
MwoI GCNNNNNNNGC 5 cut(s) 93, 96, 105, 230, 252
NciI CCSGG 4 cut(s) 369, 400, 784, 785
NdeII GATC 2 cut(s) 318, 586
NlaIII CATG 3 cut(s) 817, 830, 1165
NlaIV GGNNCC 1 cut(s) 420
NmuCI GTSAC 2 cut(s) 404, 854
NotI GCGGCCGC 1 cut(s) 256
OliI CACNNNNGTG 1 cut(s) 350
PaeR7I CTCGAG 1 cut(s) 1059
PcsI WCGNNNNNNNCGW 4 cut(s) 237, 276, 294, 1066
PctI GAATGC 1 cut(s) 548
PfeI GAWTC 4 cut(s) 803, 843, 986, 1090
PflFI GACNNNGTC 1 cut(s) 137
PfoI TCCNGGA 1 cut(s) 711
PkrI GCNGC 9 cut(s) 89, 98, 160, 184, 209, 257, 260, 528, 724
PleI GAGTC 4 cut(s) 280, 873, 1076, 1125
PpsI GAGTC 4 cut(s) 280, 873, 1076, 1125
PshAI GACNNNNGTC 1 cut(s) 1279
PsiI TTATAA 1 cut(s) 897
Psp6I CCWGG 4 cut(s) 690, 711, 873, 1236
PspFI CCCAGC 1 cut(s) 83
PspGI CCWGG 4 cut(s) 690, 711, 873, 1236
PspN4I GGNNCC 1 cut(s) 420
PsyI GACNNNGTC 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 87
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 2 cut(s) 350, 657
SacII CCGCGG 1 cut(s) 256
SaqAI TTAA 3 cut(s) 632, 891, 1157
SatI GCNGC 9 cut(s) 88, 97, 159, 183, 208, 256, 259, 527, 723
Sau3AI GATC 2 cut(s) 318, 586
ScaI AGTACT 1 cut(s) 218
SchI GAGTC 4 cut(s) 281, 874, 1076, 1126
ScrFI CCNGG 8 cut(s) 369, 400, 692, 713, 784, 785, 875, 1238
SfaNI GCATC 2 cut(s) 105, 1114
Sfr274I CTCGAG 1 cut(s) 1059
Sfr303I CCGCGG 1 cut(s) 256
SgrBI CCGCGG 1 cut(s) 256
SlaI CTCGAG 1 cut(s) 1059
SmaI CCCGGG 1 cut(s) 785
SmiMI CAYNNNNRTG 2 cut(s) 350, 657
SmlI CTYRAG 2 cut(s) 1059, 1084
SmoI CTYRAG 2 cut(s) 1059, 1084
Sse9I AATT 6 cut(s) 448, 847, 892, 936, 1048, 1269
SspI AATATT 1 cut(s) 1103
SspMI CTAG 3 cut(s) 489, 771, 1134
StyD4I CCNGG 8 cut(s) 367, 398, 690, 711, 782, 783, 873, 1236
TaaI ACNGT 1 cut(s) 352
TaiI ACGT 2 cut(s) 602, 1279
TaqI TCGA 6 cut(s) 111, 213, 270, 453, 485, 1060
TasI AATT 6 cut(s) 448, 847, 892, 936, 1048, 1269
TatI WGTACW 1 cut(s) 216
TauI GCSGC 5 cut(s) 99, 161, 185, 258, 261
TfiI GAWTC 4 cut(s) 803, 843, 986, 1090
Tru1I TTAA 3 cut(s) 632, 891, 1157
Tru9I TTAA 3 cut(s) 632, 891, 1157
TscAI CASTG 3 cut(s) 152, 931, 979
TseFI GTSAC 2 cut(s) 404, 854
TseI GCWGC 4 cut(s) 87, 207, 526, 722
Tsp45I GTSAC 2 cut(s) 404, 854
TspDTI ATGAA 4 cut(s) 389, 696, 1178, 1278
TspGWI ACGGA 2 cut(s) 491, 653
TspMI CCCGGG 1 cut(s) 783
TspRI CASTG 3 cut(s) 152, 931, 979
Tth111I GACNNNGTC 1 cut(s) 137
XagI CCTNNNNNAGG 1 cut(s) 426
XcmI CCANNNNNNNNNTGG 1 cut(s) 698
XhoI CTCGAG 1 cut(s) 1059
XmaI CCCGGG 1 cut(s) 783
XspI CTAG 3 cut(s) 489, 771, 1134
ZrmI AGTACT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.