RchiOBHm_Chr2g0098511

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
10953898 .. 10957263
3366 bp
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UTR
Exon/CDS
Intron
PRQ47330

Sequence Viewer

Length: 1557 bp
ATGCTTACTCTTCGTAAGCTCGCCTCCATCTCCCTCGTTTTCCCATCAATCTTCTTGACCCTTCTTCTTCTTCTTCTTCCCAGCTGCGACGGCCGCGTCTTCAGCTTCGAGATGCACCACCGCTTCTCCGACCCCGTCAAGCAGTGGTCGGAGGCAGCCGGAAAGCTCTCTCCGGTTGCCGCCACCAACCTCCCCGAGAAGGGCAGCTTCGAGTACTACGCCGAACTCGCCAACCGCGACCGCCTCCTCCGCGGCCGCAAGCTCGTCGAGTCCACCGACACCCTCGCTTTCTCCGACGGCAACTCCACTTTTCAGATCACCTCTTTGGGATATTTGCATTACACGACGGTGCAATTGGGGACGCCGGGAATGAAGTTTATGGTGGCGCTGGATACCGGCAGTGACCTGTTTTGGGTGCCTTGTGAAGGAACAGCTTATGCTCCTAATTTTGAGGTCAGCAAATATGACCCGAAAGGGTCGTCAACTAGCAAGAAAGTCCGTTGCAACAACAGGTTGTGTATGCAGCGTAATAAATGTCTGGGAGCATTCAACACTTGCCCTTATAGGGTCTCTTATGTCTCTGATCAAACTTCTACGTCTGGGATATTGGTAGAGGATGTTCTGCACTTAACAACAGAAGATAGTCATCATGAATATGTTGAGGCATACATTACCTTTGGTTGTGGCCAGGTGCAAAGTGGTTCATTCCTGGATATTGCTGCTCCTAATGGTTTGTTTGGTCTTGGTATGGAGAAGATATCTGTTCCTAGCATTTTATCCCGGGAAGGCTTTACCGCAGATTCCTTTTCCATGTGTTTTGGACATGATGGAGTTGGGAGAATCAATTTTGGTGACAAGGGGAGTCCTGACCAGGAAGAGACCCCATTTAATTATAACCCTTCACATCCAACCTACAACATCAGTGTAACTCAAATTAGAGTGGGGACAGATATTATGGACATTGATTTCACTGCTCTTTTTGATTCTGGGACTTCTTTCACATATTTGGATGACCCAACTTATACAAGGATTTCAGAGAGTTTCAATTCACAAGCTCGAGATAAGCGTCGTCCACCTGACTCAAGGATTCCATTTGAATATTGTTATGATATGAGTCCAGATGCAAATGCTAGTTGGATATCTGGTGTCAGTTTAACCATGAAAGGTGGAAGCCAGTTTGAAGTATATAATCCAATCATTGTTATCTCCACTCAGAGCGAGCTGGTCTATTGCCTGGCTGTTGTCAAGAGTTTGGAACTAAATATAATTGGACAAAACTTCATGACAGGCTACCATGTTGTATTTGACAGAGAGAAAAAGGTTTTGGGCTGGAAGAAGTTTGACTGCTATGACACTGAGGACCATCATACTTACTTGCCTATTAAACCACGCTCCTACAATGTGCCTCCTGCTTTTGCTCATGGACTACGCAACCATTCTATTTCAGAATCAGCGAAAAAGACCAGCCAGACTTCAGCTGCTTCTCTGCCTTACTATAGTCATACTTCTCTTCAGACTTGCTTTCTATTCACCATCCTCCTCTTCCTCTTACCGTAA

Protein Analysis

518

Amino Acids

57.84

Weight (kDa)

5.88

Isoelectric Point (pI)

39.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 114 - 285 1e-35 Xylanase inhibitor N-terminal
Asp PF00026 114 - 443 5.4e-24 Eukaryotic aspartyl protease
TAXi_C PF14541 305 - 445 1.2e-16 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 894
AasI GACNNNNNNGTC 1 cut(s) 95
AccB1I GGYRCC 1 cut(s) 415
AccII CGCG 3 cut(s) 96, 237, 252
AciI CCGC 9 cut(s) 94, 121, 180, 235, 241, 250, 252, 256, 795
AcoI YGGCCR 3 cut(s) 91, 253, 685
AcuI CTGAAG 3 cut(s) 85, 1458, 1496
AcyI GRCGYC 1 cut(s) 362
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 5 cut(s) 199, 200, 412, 425, 565
AgsI TTSAA 4 cut(s) 550, 1045, 1097, 1181
AjnI CCWGG 4 cut(s) 687, 708, 870, 1233
AjuI GAANNNNNNNTTGG 2 cut(s) 1307, 1339
AleI CACNNNNGTG 1 cut(s) 347
Alw26I GTCTC 3 cut(s) 574, 583, 872
Ama87I CYCGRG 3 cut(s) 194, 780, 1056
AoxI GGCC 3 cut(s) 91, 253, 685
ApeKI GCWGC 6 cut(s) 84, 155, 204, 523, 719, 1478
ArsI GACNNNNNNTTYG 2 cut(s) 464, 496
AspLEI GCGC 1 cut(s) 388
AspS9I GGNCC 1 cut(s) 1360
AsuC2I CCSGG 3 cut(s) 366, 781, 782
AsuHPI GGTGA 3 cut(s) 310, 863, 1522
AvaI CYCGRG 3 cut(s) 194, 780, 1056
AvaII GGWCC 1 cut(s) 1360
BalI TGGCCA 1 cut(s) 687
BanI GGYRCC 1 cut(s) 415
BbsI GAAGAC 1 cut(s) 91
BbvI GCAGC 6 cut(s) 71, 167, 216, 535, 706, 1465
BccI CCATC 5 cut(s) 35, 52, 821, 1371, 1541
BceAI ACGGC 2 cut(s) 106, 313
BcgI CGANNNNNNTGC 2 cut(s) 247, 281
BciT130I CCWGG 4 cut(s) 689, 710, 872, 1235
BciVI GTATCC 1 cut(s) 385
BclI TGATCA 1 cut(s) 583
BcnI CCSGG 3 cut(s) 366, 781, 782
BcoDI GTCTC 3 cut(s) 574, 583, 872
BfaI CTAG 3 cut(s) 486, 768, 1131
BfmI CTRYAG 1 cut(s) 1495
BfoI RGCGCY 1 cut(s) 389
BfuI GTATCC 1 cut(s) 385
BmcAI AGTACT 1 cut(s) 215
Bme1390I CCNGG 7 cut(s) 366, 689, 710, 781, 782, 872, 1235
Bme18I GGWCC 1 cut(s) 1360
BmeT110I CYCGRG 3 cut(s) 194, 780, 1056
BmgT120I GGNCC 1 cut(s) 1360
BmiI GGNNCC 1 cut(s) 417
BmrFI CCNGG 7 cut(s) 366, 689, 710, 781, 782, 872, 1235
BmsI GCATC 2 cut(s) 102, 1111
BpiI GAAGAC 1 cut(s) 91
BpuEI CTTGAG 1 cut(s) 1066
BpuMI CCSGG 3 cut(s) 366, 781, 782
BsaBI GATNNNNATC 1 cut(s) 645
BsaHI GRCGYC 1 cut(s) 362
BsaI GGTCTC 2 cut(s) 574, 872
BsaJI CCNNGG 2 cut(s) 250, 780
BsaWI WCCGGW 1 cut(s) 172
BsaXI ACNNNNNCTCC 4 cut(s) 110, 140, 287, 317
Bsc4I CCNNNNNNNGG 5 cut(s) 199, 200, 412, 425, 565
Bse118I RCCGGY 1 cut(s) 395
Bse1I ACTGG 1 cut(s) 1174
Bse8I GATNNNNATC 1 cut(s) 645
BseBI CCWGG 4 cut(s) 689, 710, 872, 1235
BseDI CCNNGG 2 cut(s) 250, 780
BseGI GGATG 4 cut(s) 622, 904, 1015, 1533
BseJI GATNNNNATC 1 cut(s) 645
BseLI CCNNNNNNNGG 5 cut(s) 199, 200, 412, 425, 565
BseMII CTCAG 2 cut(s) 1226, 1347
BseNI ACTGG 1 cut(s) 1174
BseRI GAGGAG 2 cut(s) 236, 1529
BseX3I CGGCCG 2 cut(s) 91, 253
BseXI GCAGC 6 cut(s) 71, 167, 216, 535, 706, 1465
BseYI CCCAGC 1 cut(s) 80
BsgI GTGCAG 1 cut(s) 608
Bsh1236I CGCG 3 cut(s) 96, 237, 252
Bsh1285I CGRYCG 3 cut(s) 94, 241, 256
BshFI GGCC 3 cut(s) 93, 255, 687
BshNI GGYRCC 1 cut(s) 415
BsiEI CGRYCG 3 cut(s) 94, 241, 256
BsiHKCI CYCGRG 3 cut(s) 194, 780, 1056
BsiSI CCGG 5 cut(s) 159, 173, 365, 396, 781
BslFI GGGAC 3 cut(s) 373, 958, 1003
BslI CCNNNNNNNGG 5 cut(s) 199, 200, 412, 425, 565
BsmAI GTCTC 3 cut(s) 574, 583, 872
BsmFI GGGAC 3 cut(s) 373, 958, 1003
BsmI GAATGC 1 cut(s) 545
BsnI GGCC 3 cut(s) 93, 255, 687
Bso31I GGTCTC 2 cut(s) 574, 872
BsoBI CYCGRG 3 cut(s) 194, 780, 1056
Bsp143I GATC 2 cut(s) 315, 583
BspACI CCGC 9 cut(s) 94, 121, 180, 235, 241, 250, 252, 256, 795
BspANI GGCC 3 cut(s) 93, 255, 687
BspCNI CTCAG 2 cut(s) 1225, 1348
BspFNI CGCG 3 cut(s) 96, 237, 252
BspHI TCATGA 2 cut(s) 649, 1281
BspLI GGNNCC 1 cut(s) 417
BspT107I GGYRCC 1 cut(s) 415
BspTNI GGTCTC 2 cut(s) 574, 872
BsrFI RCCGGY 1 cut(s) 395
BsrI ACTGG 1 cut(s) 1174
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 2 cut(s) 250, 780
BssMI GATC 2 cut(s) 315, 583
BssNI GRCGYC 1 cut(s) 362
Bst2UI CCWGG 4 cut(s) 689, 710, 872, 1235
Bst4CI ACNGT 2 cut(s) 349, 1554
Bst6I CTCTTC 4 cut(s) 15, 870, 1515, 1547
BstACI GRCGYC 1 cut(s) 362
BstC8I GCNNGC 3 cut(s) 21, 260, 1220
BstDEI CTNAG 2 cut(s) 1212, 1356
BstDSI CCRYGG 1 cut(s) 250
BstENI CCTNNNNNAGG 1 cut(s) 423
BstF5I GGATG 4 cut(s) 622, 904, 1015, 1533
BstFNI CGCG 3 cut(s) 96, 237, 252
BstH2I RGCGCY 1 cut(s) 389
BstHHI GCGC 1 cut(s) 388
BstKTI GATC 2 cut(s) 318, 586
BstMAI GTCTC 3 cut(s) 574, 583, 872
BstMBI GATC 2 cut(s) 315, 583
BstMCI CGRYCG 3 cut(s) 94, 241, 256
BstMWI GCNNNNNNNGC 5 cut(s) 90, 93, 102, 227, 249
BstNI CCWGG 4 cut(s) 689, 710, 872, 1235
BstSCI CCNGG 7 cut(s) 364, 687, 708, 779, 780, 870, 1233
BstSFI CTRYAG 1 cut(s) 1495
BstUI CGCG 3 cut(s) 96, 237, 252
BstV1I GCAGC 6 cut(s) 71, 167, 216, 535, 706, 1465
BstV2I GAAGAC 1 cut(s) 91
BstZI CGGCCG 2 cut(s) 91, 253
BsuI GTATCC 1 cut(s) 385
BsuRI GGCC 3 cut(s) 93, 255, 687
BtgI CCRYGG 1 cut(s) 250
BtsCI GGATG 4 cut(s) 622, 904, 1015, 1533
BtsI GCAGTG 3 cut(s) 149, 406, 969
BtsIMutI CAGTG 5 cut(s) 149, 406, 928, 969, 1353
Cac8I GCNNGC 3 cut(s) 21, 260, 1220
CciI TCATGA 2 cut(s) 649, 1281
CciNI GCGGCCGC 1 cut(s) 253
CfoI GCGC 1 cut(s) 388
Cfr10I RCCGGY 1 cut(s) 395
Cfr13I GGNCC 1 cut(s) 1360
Cfr42I CCGCGG 1 cut(s) 253
Cfr9I CCCGGG 1 cut(s) 780
CseI GACGC 3 cut(s) 85, 370, 1055
Csp6I GTAC 1 cut(s) 214
CviAII CATG 7 cut(s) 650, 811, 824, 1159, 1282, 1295, 1421
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 2 cut(s) 1212, 1356
DpnI GATC 2 cut(s) 317, 585
DpnII GATC 2 cut(s) 315, 583
DrdI GACNNNNNNGTC 1 cut(s) 95
DseDI GACNNNNNNGTC 1 cut(s) 95
EaeI YGGCCR 3 cut(s) 91, 253, 685
EagI CGGCCG 2 cut(s) 91, 253
Eam1104I CTCTTC 4 cut(s) 15, 870, 1515, 1547
EarI CTCTTC 4 cut(s) 15, 870, 1515, 1547
EclXI CGGCCG 2 cut(s) 91, 253
Eco31I GGTCTC 2 cut(s) 574, 872
Eco32I GATATC 2 cut(s) 759, 1140
Eco47I GGWCC 1 cut(s) 1360
Eco52I CGGCCG 2 cut(s) 91, 253
Eco57I CTGAAG 3 cut(s) 85, 1458, 1496
Eco88I CYCGRG 3 cut(s) 194, 780, 1056
EcoNI CCTNNNNNAGG 1 cut(s) 423
EcoRII CCWGG 4 cut(s) 687, 708, 870, 1233
EcoRV GATATC 2 cut(s) 759, 1140
FaeI CATG 7 cut(s) 653, 814, 827, 1162, 1285, 1298, 1424
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FaqI GGGAC 3 cut(s) 373, 958, 1003
FatI CATG 7 cut(s) 649, 810, 823, 1158, 1281, 1294, 1420
FbaI TGATCA 1 cut(s) 583
FokI GGATG 4 cut(s) 629, 891, 1022, 1520
FspBI CTAG 3 cut(s) 486, 768, 1131
GlaI GCGC 1 cut(s) 387
GsaI CCCAGC 1 cut(s) 84
HaeII RGCGCY 1 cut(s) 389
HaeIII GGCC 3 cut(s) 93, 255, 687
HapII CCGG 5 cut(s) 159, 173, 365, 396, 781
HgaI GACGC 3 cut(s) 85, 370, 1055
HhaI GCGC 1 cut(s) 388
Hin1I GRCGYC 1 cut(s) 362
Hin1II CATG 7 cut(s) 653, 814, 827, 1162, 1285, 1298, 1424
Hin6I GCGC 1 cut(s) 386
HinP1I GCGC 1 cut(s) 386
HincII GTYRAC 1 cut(s) 483
HindII GTYRAC 1 cut(s) 483
HinfI GANTC 9 cut(s) 269, 800, 840, 862, 983, 1079, 1087, 1114, 1448
HpaII CCGG 5 cut(s) 159, 173, 365, 396, 781
HphI GGTGA 3 cut(s) 310, 863, 1522
Hpy166II GTNNAC 3 cut(s) 273, 483, 1073
Hpy188I TCNGA 9 cut(s) 130, 151, 295, 315, 583, 1036, 1215, 1447, 1515
Hpy188III TCNNGA 8 cut(s) 55, 109, 650, 866, 1058, 1118, 1246, 1282
Hpy8I GTNNAC 3 cut(s) 273, 483, 1073
Hpy99I CGWCG 5 cut(s) 92, 269, 299, 349, 1071
HpyAV CCTTC 5 cut(s) 71, 193, 419, 779, 909
HpyCH4III ACNGT 2 cut(s) 349, 1554
HpyCH4IV ACGT 1 cut(s) 596
HpyCH4V TGCA 8 cut(s) 115, 337, 352, 504, 523, 625, 694, 1124
HpyF10VI GCNNNNNNNGC 5 cut(s) 90, 93, 102, 227, 249
HpyF3I CTNAG 2 cut(s) 1212, 1356
HpySE526I ACGT 1 cut(s) 596
Hsp92I GRCGYC 1 cut(s) 362
Hsp92II CATG 7 cut(s) 653, 814, 827, 1162, 1285, 1298, 1424
HspAI GCGC 1 cut(s) 386
Ksp22I TGATCA 1 cut(s) 583
KspI CCGCGG 1 cut(s) 253
Kzo9I GATC 2 cut(s) 315, 583
LmnI GCTCC 4 cut(s) 445, 542, 727, 1397
Lsp1109I GCAGC 6 cut(s) 71, 167, 216, 535, 706, 1465
LweI GCATC 2 cut(s) 102, 1111
MaeI CTAG 3 cut(s) 486, 768, 1131
MaeII ACGT 1 cut(s) 596
MaeIII GTNAC 3 cut(s) 401, 851, 925
MalI GATC 2 cut(s) 317, 585
MboI GATC 2 cut(s) 315, 583
MfeI CAATTG 1 cut(s) 353
MlsI TGGCCA 1 cut(s) 687
MluCI AATT 7 cut(s) 353, 445, 844, 889, 933, 1045, 1266
MluNI TGGCCA 1 cut(s) 687
MlyI GAGTC 4 cut(s) 278, 871, 1073, 1123
MmeI TCCRAC 5 cut(s) 129, 153, 318, 932, 1115
Mox20I TGGCCA 1 cut(s) 687
MscI TGGCCA 1 cut(s) 687
MseI TTAA 4 cut(s) 629, 888, 1154, 1383
MslI CAYNNNNRTG 2 cut(s) 347, 654
Msp20I TGGCCA 1 cut(s) 687
MspA1I CMGCKG 3 cut(s) 84, 252, 1478
MspI CCGG 5 cut(s) 159, 173, 365, 396, 781
MspR9I CCNGG 7 cut(s) 366, 689, 710, 781, 782, 872, 1235
MunI CAATTG 1 cut(s) 353
Mva1269I GAATGC 1 cut(s) 545
MvaI CCWGG 4 cut(s) 689, 710, 872, 1235
MvnI CGCG 3 cut(s) 96, 237, 252
MwoI GCNNNNNNNGC 5 cut(s) 90, 93, 102, 227, 249
NciI CCSGG 3 cut(s) 366, 781, 782
NdeII GATC 2 cut(s) 315, 583
NlaIII CATG 7 cut(s) 653, 814, 827, 1162, 1285, 1298, 1424
NlaIV GGNNCC 1 cut(s) 417
NmuCI GTSAC 2 cut(s) 401, 851
NotI GCGGCCGC 1 cut(s) 253
OliI CACNNNNGTG 1 cut(s) 347
PaeR7I CTCGAG 1 cut(s) 1056
PagI TCATGA 2 cut(s) 649, 1281
PcsI WCGNNNNNNNCGW 4 cut(s) 234, 273, 291, 1063
PctI GAATGC 1 cut(s) 545
PfeI GAWTC 5 cut(s) 800, 840, 983, 1087, 1448
PflFI GACNNNGTC 1 cut(s) 134
PfoI TCCNGGA 1 cut(s) 708
PleI GAGTC 4 cut(s) 277, 870, 1073, 1122
PpsI GAGTC 4 cut(s) 277, 870, 1073, 1122
PsiI TTATAA 1 cut(s) 894
Psp6I CCWGG 4 cut(s) 687, 708, 870, 1233
PspFI CCCAGC 1 cut(s) 80
PspGI CCWGG 4 cut(s) 687, 708, 870, 1233
PspN4I GGNNCC 1 cut(s) 417
PspPI GGNCC 1 cut(s) 1360
PsrI GAACNNNNNNTAC 2 cut(s) 603, 635
PsyI GACNNNGTC 1 cut(s) 134
PvuII CAGCTG 2 cut(s) 84, 1478
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
RseI CAYNNNNRTG 2 cut(s) 347, 654
SacII CCGCGG 1 cut(s) 253
SaqAI TTAA 4 cut(s) 629, 888, 1154, 1383
Sau3AI GATC 2 cut(s) 315, 583
Sau96I GGNCC 1 cut(s) 1360
ScaI AGTACT 1 cut(s) 215
SchI GAGTC 4 cut(s) 278, 871, 1073, 1123
ScrFI CCNGG 7 cut(s) 366, 689, 710, 781, 782, 872, 1235
SfaNI GCATC 2 cut(s) 102, 1111
SfcI CTRYAG 1 cut(s) 1495
Sfr274I CTCGAG 1 cut(s) 1056
Sfr303I CCGCGG 1 cut(s) 253
SgrBI CCGCGG 1 cut(s) 253
SinI GGWCC 1 cut(s) 1360
SlaI CTCGAG 1 cut(s) 1056
SmaI CCCGGG 1 cut(s) 782
SmiMI CAYNNNNRTG 2 cut(s) 347, 654
SmlI CTYRAG 2 cut(s) 1056, 1081
SmoI CTYRAG 2 cut(s) 1056, 1081
Sse9I AATT 7 cut(s) 353, 445, 844, 889, 933, 1045, 1266
SsiI CCGC 9 cut(s) 94, 121, 180, 235, 241, 250, 252, 256, 795
SspI AATATT 1 cut(s) 1100
SspMI CTAG 3 cut(s) 486, 768, 1131
StyD4I CCNGG 7 cut(s) 364, 687, 708, 779, 780, 870, 1233
TaaI ACNGT 2 cut(s) 349, 1554
TaiI ACGT 1 cut(s) 599
TaqI TCGA 4 cut(s) 108, 210, 267, 1057
TasI AATT 7 cut(s) 353, 445, 844, 889, 933, 1045, 1266
TatI WGTACW 1 cut(s) 213
TauI GCSGC 4 cut(s) 96, 182, 255, 258
TfiI GAWTC 5 cut(s) 800, 840, 983, 1087, 1448
Tru1I TTAA 4 cut(s) 629, 888, 1154, 1383
Tru9I TTAA 4 cut(s) 629, 888, 1154, 1383
TscAI CASTG 5 cut(s) 149, 406, 928, 976, 1360
TseFI GTSAC 2 cut(s) 401, 851
TseI GCWGC 6 cut(s) 84, 155, 204, 523, 719, 1478
Tsp45I GTSAC 2 cut(s) 401, 851
TspDTI ATGAA 5 cut(s) 386, 666, 693, 1175, 1270
TspGWI ACGGA 1 cut(s) 488
TspMI CCCGGG 1 cut(s) 780
TspRI CASTG 5 cut(s) 149, 406, 928, 976, 1360
Tth111I GACNNNGTC 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 1360
XagI CCTNNNNNAGG 1 cut(s) 423
XcmI CCANNNNNNNNNTGG 1 cut(s) 695
XhoI CTCGAG 1 cut(s) 1056
XmaI CCCGGG 1 cut(s) 780
XspI CTAG 3 cut(s) 486, 768, 1131
ZrmI AGTACT 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.