AT4G35930

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0008807
Physical Location & Seq
Forward (+)
17018929 .. 17021112
2184 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G35930.1

Sequence Viewer

Length: 966 bp
ATGGGGAAGGTATCTCCAAAGGATTTGGATTCAAAAACCTCGGTGAGGAAAAAGAAGTTGAAAAGTTCAAGTAACAAGTATTTAAAGCCAGGGGCTTTGGTTCAGCTTTGTTACAGCAAAGCATCGGCTGCTAAGTCATGTAATGAATTAGGGAAGAAACGAGTACCTGTGTTTGATACTAAGTCCTGCAATGATTTGGGGAAGAAACGAGTACCTGTATTTGATATTAAGCATGCGAGGAACAATAAAATGGCAGTGGAACAGTTGAATTCTCCAAAAAGCCCTCTTATGTTGTCCCCTGTCAACGTTGTTAAGCGGAGTACTCTGGTGAGGCCAATGAAGTTTGATGATCTGCAGGTGGAGAGTAATAATACTTGTAAGAAAAGCCCTTTAATGTTATCCCCAATGGGTATTGTTATGCAAAACACTCTGTTGAGGACACCAAAAACTCCCCAAGCTGATCCTTGCGTTTCAGAATCACAGCTTGAGTCTCTTCCCATGGATTTACTGGTTAAAATAGTTTGTCATCTGCACCATGACCAGCTGAAGGCTGTTTTCCATGTTTCTCAAAGAATAAGAATGGCCACCATACTTGCAAGACAATATCATTTCAATTATACAACACCAGACCGCTCAAGACAGGAAATGTTGAGGGTCATGACCCCAGTTCCAATAAATCGTTGGCCATTTCGTAGAGGAGATGGAAACCCAACAATGGTGTCAAGCCCACATACCCCCAAAGCACCAAAACATGCTCCTAGACCACCCTCTCGAACCAAACTCGCGGAGATGAAGCAAATCACTGCTGTTCTTTTCCAAGACCAGACACCATTTCCTTCAAGATGCATCGTTCCTTCTGTTCTCCAGAGGCCGACTTTGTTCAAACCAATGGCTCCAAAGCACCCTCGAGTGCTCTTCTATGAGGATGAACTATGTCAAGCTGTTGCTCAAAACAACCTCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

321

Amino Acids

36.28

Weight (kDa)

10.13

Isoelectric Point (pI)

56.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 346
Acc36I ACCTGC 1 cut(s) 346
AccBSI CCGCTC 1 cut(s) 633
AccII CGCG 1 cut(s) 785
AciI CCGC 3 cut(s) 316, 631, 785
AclI AACGTT 1 cut(s) 306
AclWI GGATC 1 cut(s) 455
AcoI YGGCCR 2 cut(s) 582, 683
AcsI RAATTY 1 cut(s) 268
AcuI CTGAAG 1 cut(s) 566
AfaI GTAC 3 cut(s) 165, 213, 322
AfiI CCNNNNNNNGG 3 cut(s) 45, 547, 715
AgsI TTSAA 7 cut(s) 33, 61, 69, 268, 613, 840, 883
AjnI CCWGG 1 cut(s) 88
AluBI AGCT 5 cut(s) 106, 458, 484, 544, 941
AluI AGCT 5 cut(s) 106, 458, 484, 544, 941
Alw21I GWGCWC 1 cut(s) 915
Alw26I GTCTC 1 cut(s) 495
AlwI GGATC 1 cut(s) 455
Ama87I CYCGRG 1 cut(s) 906
AoxI GGCC 4 cut(s) 332, 582, 683, 869
ApeKI GCWGC 1 cut(s) 128
ApoI RAATTY 1 cut(s) 268
AsuHPI GGTGA 3 cut(s) 55, 340, 952
AvaI CYCGRG 1 cut(s) 906
BalI TGGCCA 2 cut(s) 584, 685
Bbv12I GWGCWC 1 cut(s) 915
BbvI GCAGC 1 cut(s) 115
BccI CCATC 1 cut(s) 695
BciT130I CCWGG 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 495
BfaI CTAG 1 cut(s) 759
BfmI CTRYAG 1 cut(s) 353
BfuAI ACCTGC 1 cut(s) 346
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
BmcAI AGTACT 1 cut(s) 322
Bme1390I CCNGG 1 cut(s) 90
BmeT110I CYCGRG 1 cut(s) 906
BmiI GGNNCC 1 cut(s) 894
BmrFI CCNGG 1 cut(s) 90
BmrI ACTGGG 1 cut(s) 659
BmsI GCATC 3 cut(s) 131, 833, 855
BmuI ACTGGG 1 cut(s) 659
BpmI CTGGAG 1 cut(s) 848
BpuEI CTTGAG 2 cut(s) 506, 619
BsaJI CCNNGG 3 cut(s) 39, 89, 498
Bsc4I CCNNNNNNNGG 3 cut(s) 45, 547, 715
Bse1I ACTGG 2 cut(s) 513, 665
Bse3DI GCAATG 1 cut(s) 196
BseBI CCWGG 1 cut(s) 90
BseDI CCNNGG 3 cut(s) 39, 89, 498
BseGI GGATG 1 cut(s) 931
BseLI CCNNNNNNNGG 3 cut(s) 45, 547, 715
BseMI GCAATG 1 cut(s) 196
BseNI ACTGG 2 cut(s) 513, 665
BseRI GAGGAG 1 cut(s) 711
BseXI GCAGC 1 cut(s) 115
BsgI GTGCAG 1 cut(s) 515
Bsh1236I CGCG 1 cut(s) 785
BshFI GGCC 4 cut(s) 334, 584, 685, 871
BsiHKAI GWGCWC 1 cut(s) 915
BsiHKCI CYCGRG 1 cut(s) 906
BslFI GGGAC 1 cut(s) 280
BslI CCNNNNNNNGG 3 cut(s) 45, 547, 715
BsmAI GTCTC 1 cut(s) 495
BsmFI GGGAC 1 cut(s) 280
BsnI GGCC 4 cut(s) 334, 584, 685, 871
BsoBI CYCGRG 1 cut(s) 906
Bsp1286I GDGCHC 1 cut(s) 915
Bsp143I GATC 2 cut(s) 349, 460
Bsp19I CCATGG 1 cut(s) 498
BspACI CCGC 3 cut(s) 316, 631, 785
BspANI GGCC 4 cut(s) 334, 584, 685, 871
BspFNI CGCG 1 cut(s) 785
BspHI TCATGA 1 cut(s) 657
BspLI GGNNCC 1 cut(s) 894
BspMAI CTGCAG 1 cut(s) 357
BspMI ACCTGC 1 cut(s) 346
BspPI GGATC 1 cut(s) 455
BspQI GCTCTTC 1 cut(s) 920
BsrBI CCGCTC 1 cut(s) 633
BsrDI GCAATG 1 cut(s) 196
BsrI ACTGG 2 cut(s) 513, 665
BssECI CCNNGG 3 cut(s) 39, 89, 498
BssMI GATC 2 cut(s) 349, 460
BssT1I CCWWGG 1 cut(s) 498
Bst2UI CCWGG 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 264
Bst6I CTCTTC 2 cut(s) 498, 920
BstAPI GCANNNNNTGC 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 2 cut(s) 132, 180
BstDSI CCRYGG 1 cut(s) 498
BstENI CCTNNNNNAGG 1 cut(s) 43
BstF5I GGATG 1 cut(s) 931
BstFNI CGCG 1 cut(s) 785
BstKTI GATC 2 cut(s) 352, 463
BstMAI GTCTC 1 cut(s) 495
BstMBI GATC 2 cut(s) 349, 460
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNI CCWGG 1 cut(s) 90
BstNSI RCATGY 2 cut(s) 236, 755
BstSCI CCNGG 1 cut(s) 88
BstSFI CTRYAG 1 cut(s) 353
BstUI CGCG 1 cut(s) 785
BstV1I GCAGC 1 cut(s) 115
BsuRI GGCC 4 cut(s) 334, 584, 685, 871
BtgI CCRYGG 1 cut(s) 498
BtsCI GGATG 1 cut(s) 931
BtsI GCAGTG 2 cut(s) 261, 801
BtsIMutI CAGTG 2 cut(s) 261, 801
BveI ACCTGC 1 cut(s) 346
Cac8I GCNNGC 1 cut(s) 234
CciI TCATGA 1 cut(s) 657
Csp6I GTAC 3 cut(s) 164, 212, 321
CspCI CAANNNNNGTGG 2 cut(s) 574, 609
CviAII CATG 7 cut(s) 138, 233, 499, 536, 560, 658, 752
CviQI GTAC 3 cut(s) 164, 212, 321
DdeI CTNAG 2 cut(s) 132, 180
DpnI GATC 2 cut(s) 351, 462
DpnII GATC 2 cut(s) 349, 460
DraI TTTAAA 1 cut(s) 84
EaeI YGGCCR 2 cut(s) 582, 683
Eam1104I CTCTTC 2 cut(s) 498, 920
EarI CTCTTC 2 cut(s) 498, 920
Eco130I CCWWGG 1 cut(s) 498
Eco57I CTGAAG 1 cut(s) 566
Eco88I CYCGRG 1 cut(s) 906
EcoNI CCTNNNNNAGG 1 cut(s) 43
EcoRI GAATTC 1 cut(s) 268
EcoRII CCWGG 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 498
EcoT22I ATGCAT 1 cut(s) 848
ErhI CCWWGG 1 cut(s) 498
FaeI CATG 7 cut(s) 141, 236, 502, 539, 563, 661, 755
FaqI GGGAC 1 cut(s) 280
FatI CATG 7 cut(s) 137, 232, 498, 535, 559, 657, 751
Fnu4HI GCNGC 1 cut(s) 129
FokI GGATG 1 cut(s) 938
Fsp4HI GCNGC 1 cut(s) 129
FspBI CTAG 1 cut(s) 759
GluI GCNGC 1 cut(s) 129
GsuI CTGGAG 1 cut(s) 848
HaeIII GGCC 4 cut(s) 334, 584, 685, 871
Hin1II CATG 7 cut(s) 141, 236, 502, 539, 563, 661, 755
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HinfI GANTC 3 cut(s) 29, 476, 488
HphI GGTGA 3 cut(s) 55, 340, 952
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 1 cut(s) 475
Hpy188III TCNNGA 5 cut(s) 636, 658, 771, 840, 865
Hpy8I GTNNAC 1 cut(s) 304
HpyAV CCTTC 3 cut(s) 541, 846, 864
HpyCH4III ACNGT 1 cut(s) 264
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 6 cut(s) 189, 355, 421, 532, 596, 846
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 2 cut(s) 132, 180
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 7 cut(s) 141, 236, 502, 539, 563, 661, 755
Kzo9I GATC 2 cut(s) 349, 460
LguI GCTCTTC 1 cut(s) 920
LmnI GCTCC 2 cut(s) 760, 898
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 3 cut(s) 131, 833, 855
MaeI CTAG 1 cut(s) 759
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 2 cut(s) 71, 110
MalI GATC 2 cut(s) 351, 462
MbiI CCGCTC 1 cut(s) 633
MboI GATC 2 cut(s) 349, 460
MboII GAAGA 4 cut(s) 166, 214, 485, 907
MhlI GDGCHC 1 cut(s) 915
MlsI TGGCCA 2 cut(s) 584, 685
MluCI AATT 3 cut(s) 146, 268, 613
MluNI TGGCCA 2 cut(s) 584, 685
MlyI GAGTC 1 cut(s) 497
Mox20I TGGCCA 2 cut(s) 584, 685
Mph1103I ATGCAT 1 cut(s) 848
MscI TGGCCA 2 cut(s) 584, 685
MseI TTAA 5 cut(s) 83, 228, 312, 392, 513
Msp20I TGGCCA 2 cut(s) 584, 685
MspA1I CMGCKG 1 cut(s) 544
MspR9I CCNGG 1 cut(s) 90
MvaI CCWGG 1 cut(s) 90
MvnI CGCG 1 cut(s) 785
MwoI GCNNNNNNNGC 1 cut(s) 128
NcoI CCATGG 1 cut(s) 498
NdeII GATC 2 cut(s) 349, 460
NlaIII CATG 7 cut(s) 141, 236, 502, 539, 563, 661, 755
NlaIV GGNNCC 1 cut(s) 894
NsiI ATGCAT 1 cut(s) 848
NspI RCATGY 2 cut(s) 236, 755
PaeI GCATGC 1 cut(s) 236
PaeR7I CTCGAG 1 cut(s) 906
PagI TCATGA 1 cut(s) 657
PaqCI CACCTGC 1 cut(s) 346
PciSI GCTCTTC 1 cut(s) 920
PfeI GAWTC 2 cut(s) 29, 476
PkrI GCNGC 1 cut(s) 130
PleI GAGTC 1 cut(s) 496
PpsI GAGTC 1 cut(s) 496
Psp1406I AACGTT 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 88
PspGI CCWGG 1 cut(s) 88
PspN4I GGNNCC 1 cut(s) 894
PspXI VCTCGAGB 1 cut(s) 906
PstI CTGCAG 1 cut(s) 357
PvuII CAGCTG 1 cut(s) 544
RsaI GTAC 3 cut(s) 165, 213, 322
RsaNI GTAC 3 cut(s) 164, 212, 321
SapI GCTCTTC 1 cut(s) 920
SaqAI TTAA 5 cut(s) 83, 228, 312, 392, 513
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 2 cut(s) 349, 460
ScaI AGTACT 1 cut(s) 322
SchI GAGTC 1 cut(s) 497
ScrFI CCNGG 1 cut(s) 90
SduI GDGCHC 1 cut(s) 915
SfaNI GCATC 3 cut(s) 131, 833, 855
SfcI CTRYAG 1 cut(s) 353
Sfr274I CTCGAG 1 cut(s) 906
SlaI CTCGAG 1 cut(s) 906
SmlI CTYRAG 3 cut(s) 485, 634, 906
SmoI CTYRAG 3 cut(s) 485, 634, 906
SphI GCATGC 1 cut(s) 236
Sse9I AATT 3 cut(s) 146, 268, 613
SsiI CCGC 3 cut(s) 316, 631, 785
SspMI CTAG 1 cut(s) 759
StyD4I CCNGG 1 cut(s) 88
StyI CCWWGG 1 cut(s) 498
TaaI ACNGT 1 cut(s) 264
TaiI ACGT 1 cut(s) 309
TaqI TCGA 2 cut(s) 772, 907
TasI AATT 3 cut(s) 146, 268, 613
TatI WGTACW 1 cut(s) 320
TfiI GAWTC 2 cut(s) 29, 476
Tru1I TTAA 5 cut(s) 83, 228, 312, 392, 513
Tru9I TTAA 5 cut(s) 83, 228, 312, 392, 513
TscAI CASTG 2 cut(s) 261, 808
TseI GCWGC 1 cut(s) 128
TspDTI ATGAA 4 cut(s) 159, 353, 806, 942
TspRI CASTG 2 cut(s) 261, 808
XagI CCTNNNNNAGG 1 cut(s) 43
XapI RAATTY 1 cut(s) 268
XceI RCATGY 2 cut(s) 236, 755
XcmI CCANNNNNNNNNTGG 2 cut(s) 505, 678
XhoI CTCGAG 1 cut(s) 906
XspI CTAG 1 cut(s) 759
ZrmI AGTACT 1 cut(s) 322
Zsp2I ATGCAT 1 cut(s) 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.