Rorug02G0074900

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0008807
Physical Location & Seq
Forward (+)
5946651 .. 5948143
1493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0074900.1

Sequence Viewer

Length: 927 bp
ATGAAGGAAATGGAGATCCCTGTCATAGACTTTGGTGAGATCAATGGTGAAGAGAGGAGAAAGACAATGGCTCTCCTGAACCAAGCATGCGAGCAATGGGGCTTCTTTCAAATTGAGAACCATGGAATCGACAAAAAGCTGATGGACAAAGTGAAGCAATTGGTAAATGCACACTACGAGGAAAATTTGAAAGAGAGCTTTTATCAGTCAGAGATAGCTAGAAGCTTAGAGAAAGACGATACATCTGACAAAGACTGGGAAACCACCTTTTTCGTCTGGCATCGCCCCACATCTAACATTGAAGCAATTCCAAACATCTCAGAGGATCTTTGCAAAACAATGAATGAGTATATAGCTCAGCTGATCAACCTGGCAGAGAAACTCTCTGAGCTCATGTGTGAGAATCTTGGTTTGGAGAAGGATGATATCAAGGATGCATTTTCAGGTAGCAAGGGTCCTTCTGTTGGGACAAAAGTTGCAAAATATCCCAAGTGCTCTCAGCCAGAACGTGTGAGAGGATTGCGAGAGCACACTGATGCTGGTGGGATCATACTGTTGCTCCAAGACGACCAAGTTCCGGGTCTAGAATTCTTCAAAGATGGCAAATGGGTTGCAATTCCACCGTCTAAGAACAACACCATCTTTGTGAACACAGGTGACCAACTGGAAGTGCTGAGTAATGGAAGGTACAAAAGTACTTTGCACCGTGTCTTGGCAGACAAGAATGGAAGTCGACTCTCCATTGCTACCTTCTATAATCCTGCCGGAGATGCCCTTATCTCTCCAGCTCCCAAACTCTTATACCCCAATAGCTTCCGTTTTCAAGATTACCTGAAGCTTTATGCCACCACAAAGTTCAATGACAAGGGCCCCAGATTCGAATCCATGAAACAAATGGCCAATGGGAACAATGGTTTCCATACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

308

Amino Acids

35.02

Weight (kDa)

5.65

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 6 - 64 5.5e-15 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 160 - 254 9.5e-31 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 733
AclWI GGATC 3 cut(s) 10, 333, 554
AcoI YGGCCR 1 cut(s) 897
AcsI RAATTY 2 cut(s) 184, 587
AcuI CTGAAG 1 cut(s) 854
AfaI GTAC 2 cut(s) 689, 697
AfiI CCNNNNNNNGG 3 cut(s) 464, 577, 712
AflIII ACRYGT 1 cut(s) 508
AgsI TTSAA 6 cut(s) 110, 190, 302, 595, 824, 859
AjnI CCWGG 1 cut(s) 369
AjuI GAANNNNNNNTTGG 2 cut(s) 395, 427
Alw21I GWGCWC 3 cut(s) 393, 497, 531
AlwI GGATC 3 cut(s) 10, 333, 554
AoxI GGCC 2 cut(s) 868, 897
ApaI GGGCCC 1 cut(s) 872
ApoI RAATTY 2 cut(s) 184, 587
Asp700I GAANNNNTTC 1 cut(s) 306
AspS9I GGNCC 3 cut(s) 455, 868, 869
AsuC2I CCSGG 1 cut(s) 579
AsuHPI GGTGA 3 cut(s) 47, 59, 668
AsuII TTCGAA 1 cut(s) 879
AvaII GGWCC 1 cut(s) 455
BaeGI GKGCMC 1 cut(s) 872
BaeI ACNNNNGTAYC 2 cut(s) 679, 712
BalI TGGCCA 1 cut(s) 899
BanII GRGCYC 2 cut(s) 393, 872
Bbv12I GWGCWC 3 cut(s) 393, 497, 531
BccI CCATC 3 cut(s) 136, 593, 647
BciT130I CCWGG 1 cut(s) 371
BclI TGATCA 1 cut(s) 363
BcnI CCSGG 1 cut(s) 579
BfaI CTAG 2 cut(s) 219, 584
BlpI GCTNAGC 1 cut(s) 357
BmcAI AGTACT 1 cut(s) 697
Bme1390I CCNGG 2 cut(s) 371, 579
Bme18I GGWCC 1 cut(s) 455
BmgT120I GGNCC 3 cut(s) 455, 868, 869
BmiI GGNNCC 3 cut(s) 456, 870, 871
BmrFI CCNGG 2 cut(s) 371, 579
BmrI ACTGGG 1 cut(s) 265
BmsI GCATC 4 cut(s) 289, 424, 526, 760
BmuI ACTGGG 1 cut(s) 265
BplI GAGNNNNNCTC 2 cut(s) 368, 400
BpmI CTGGAG 1 cut(s) 768
Bpu1102I GCTNAGC 1 cut(s) 357
Bpu14I TTCGAA 1 cut(s) 879
BpuMI CCSGG 1 cut(s) 579
BsaBI GATNNNNATC 1 cut(s) 880
BsaJI CCNNGG 1 cut(s) 121
BsaXI ACNNNNNCTCC 2 cut(s) 543, 573
Bsc4I CCNNNNNNNGG 3 cut(s) 464, 577, 712
Bse1I ACTGG 2 cut(s) 260, 669
Bse3DI GCAATG 2 cut(s) 101, 741
Bse8I GATNNNNATC 1 cut(s) 880
BseBI CCWGG 1 cut(s) 371
BseDI CCNNGG 1 cut(s) 121
BseGI GGATG 2 cut(s) 427, 439
BseJI GATNNNNATC 1 cut(s) 880
BseLI CCNNNNNNNGG 3 cut(s) 464, 577, 712
BseMI GCAATG 2 cut(s) 101, 741
BseMII CTCAG 5 cut(s) 333, 371, 378, 512, 665
BseNI ACTGG 2 cut(s) 260, 669
BseRI GAGGAG 1 cut(s) 70
BseSI GKGCMC 1 cut(s) 872
BshFI GGCC 2 cut(s) 870, 899
BsiHKAI GWGCWC 3 cut(s) 393, 497, 531
BsiSI CCGG 2 cut(s) 578, 765
BslFI GGGAC 1 cut(s) 481
BslI CCNNNNNNNGG 3 cut(s) 464, 577, 712
BsmFI GGGAC 1 cut(s) 481
BsnI GGCC 2 cut(s) 870, 899
Bsp119I TTCGAA 1 cut(s) 879
Bsp120I GGGCCC 1 cut(s) 868
Bsp1286I GDGCHC 4 cut(s) 393, 497, 531, 872
Bsp143I GATC 5 cut(s) 15, 39, 325, 363, 546
Bsp1720I GCTNAGC 1 cut(s) 357
Bsp19I CCATGG 1 cut(s) 121
BspANI GGCC 2 cut(s) 870, 899
BspCNI CTCAG 5 cut(s) 332, 370, 379, 511, 666
BspLI GGNNCC 3 cut(s) 456, 870, 871
BspPI GGATC 3 cut(s) 10, 333, 554
BspT104I TTCGAA 1 cut(s) 879
BsrDI GCAATG 2 cut(s) 101, 741
BsrI ACTGG 2 cut(s) 260, 669
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 5 cut(s) 15, 39, 325, 363, 546
BssT1I CCWWGG 1 cut(s) 121
Bst2UI CCWGG 1 cut(s) 371
Bst4CI ACNGT 3 cut(s) 555, 624, 707
Bst6I CTCTTC 1 cut(s) 45
BstBI TTCGAA 1 cut(s) 879
BstC8I GCNNGC 2 cut(s) 88, 92
BstDEI CTNAG 7 cut(s) 226, 319, 357, 387, 498, 627, 674
BstDSI CCRYGG 1 cut(s) 121
BstEII GGTNACC 1 cut(s) 656
BstF5I GGATG 2 cut(s) 427, 439
BstKTI GATC 5 cut(s) 18, 42, 328, 366, 549
BstMBI GATC 5 cut(s) 15, 39, 325, 363, 546
BstMWI GCNNNNNNNGC 1 cut(s) 770
BstNI CCWGG 1 cut(s) 371
BstNSI RCATGY 1 cut(s) 90
BstPI GGTNACC 1 cut(s) 656
BstSCI CCNGG 2 cut(s) 369, 577
BstSLI GKGCMC 1 cut(s) 872
BstX2I RGATCY 2 cut(s) 15, 325
BstYI RGATCY 2 cut(s) 15, 325
BsuRI GGCC 2 cut(s) 870, 899
BtgI CCRYGG 1 cut(s) 121
BtgZI GCGATG 1 cut(s) 266
BtsCI GGATG 2 cut(s) 427, 439
BtsIMutI CAGTG 1 cut(s) 531
Cac8I GCNNGC 2 cut(s) 88, 92
Cfr13I GGNCC 3 cut(s) 455, 868, 869
Csp6I GTAC 2 cut(s) 688, 696
CviAII CATG 4 cut(s) 87, 122, 394, 886
CviQI GTAC 2 cut(s) 688, 696
DdeI CTNAG 7 cut(s) 226, 319, 357, 387, 498, 627, 674
DpnI GATC 5 cut(s) 17, 41, 327, 365, 548
DpnII GATC 5 cut(s) 15, 39, 325, 363, 546
EaeI YGGCCR 1 cut(s) 897
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Ecl136II GAGCTC 1 cut(s) 391
Eco130I CCWWGG 1 cut(s) 121
Eco24I GRGCYC 2 cut(s) 393, 872
Eco32I GATATC 1 cut(s) 427
Eco47I GGWCC 1 cut(s) 455
Eco53kI GAGCTC 1 cut(s) 391
Eco57I CTGAAG 1 cut(s) 854
Eco91I GGTNACC 1 cut(s) 656
EcoICRI GAGCTC 1 cut(s) 391
EcoO109I RGGNCCY 3 cut(s) 455, 868, 869
EcoO65I GGTNACC 1 cut(s) 656
EcoRI GAATTC 1 cut(s) 587
EcoRII CCWGG 1 cut(s) 369
EcoRV GATATC 1 cut(s) 427
EcoT14I CCWWGG 1 cut(s) 121
EcoT22I ATGCAT 1 cut(s) 439
EcoT38I GRGCYC 2 cut(s) 393, 872
ErhI CCWWGG 1 cut(s) 121
FaeI CATG 4 cut(s) 90, 125, 397, 889
FaqI GGGAC 1 cut(s) 481
FatI CATG 4 cut(s) 86, 121, 393, 885
FbaI TGATCA 1 cut(s) 363
FblI GTMKAC 1 cut(s) 733
FokI GGATG 2 cut(s) 434, 446
FriOI GRGCYC 2 cut(s) 393, 872
FspBI CTAG 2 cut(s) 219, 584
GsuI CTGGAG 1 cut(s) 768
HaeIII GGCC 2 cut(s) 870, 899
HapII CCGG 2 cut(s) 578, 765
Hin1II CATG 4 cut(s) 90, 125, 397, 889
HincII GTYRAC 1 cut(s) 734
HindII GTYRAC 1 cut(s) 734
HindIII AAGCTT 2 cut(s) 223, 836
HinfI GANTC 5 cut(s) 126, 403, 735, 876, 881
HpaII CCGG 2 cut(s) 578, 765
HphI GGTGA 3 cut(s) 47, 59, 668
Hpy166II GTNNAC 2 cut(s) 649, 734
Hpy188I TCNGA 4 cut(s) 211, 247, 322, 388
Hpy188III TCNNGA 3 cut(s) 76, 584, 824
Hpy8I GTNNAC 2 cut(s) 649, 734
HpyAV CCTTC 4 cut(s) 412, 468, 678, 760
HpyCH4III ACNGT 3 cut(s) 555, 624, 707
HpyCH4IV ACGT 1 cut(s) 508
HpyCH4V TGCA 6 cut(s) 170, 333, 437, 479, 614, 703
HpyF10VI GCNNNNNNNGC 1 cut(s) 770
HpyF3I CTNAG 7 cut(s) 226, 319, 357, 387, 498, 627, 674
HpySE526I ACGT 1 cut(s) 508
Hsp92II CATG 4 cut(s) 90, 125, 397, 889
Ksp22I TGATCA 1 cut(s) 363
Kzo9I GATC 5 cut(s) 15, 39, 325, 363, 546
LmnI GCTCC 2 cut(s) 564, 793
LweI GCATC 4 cut(s) 289, 424, 526, 760
MaeI CTAG 2 cut(s) 219, 584
MaeII ACGT 1 cut(s) 508
MaeIII GTNAC 1 cut(s) 656
MalI GATC 5 cut(s) 17, 41, 327, 365, 548
MboI GATC 5 cut(s) 15, 39, 325, 363, 546
MboII GAAGA 2 cut(s) 62, 583
MfeI CAATTG 1 cut(s) 158
MflI RGATCY 2 cut(s) 15, 325
MhlI GDGCHC 4 cut(s) 393, 497, 531, 872
MlsI TGGCCA 1 cut(s) 899
MluCI AATT 6 cut(s) 111, 158, 184, 306, 587, 615
MluNI TGGCCA 1 cut(s) 899
MlyI GAGTC 1 cut(s) 729
MnlI CCTC 4 cut(s) 48, 172, 316, 509
Mox20I TGGCCA 1 cut(s) 899
Mph1103I ATGCAT 1 cut(s) 439
MroXI GAANNNNTTC 1 cut(s) 306
MscI TGGCCA 1 cut(s) 899
MslI CAYNNNNRTG 2 cut(s) 534, 644
Msp20I TGGCCA 1 cut(s) 899
MspA1I CMGCKG 1 cut(s) 361
MspI CCGG 2 cut(s) 578, 765
MspR9I CCNGG 2 cut(s) 371, 579
MunI CAATTG 1 cut(s) 158
MvaI CCWGG 1 cut(s) 371
MwoI GCNNNNNNNGC 1 cut(s) 770
NciI CCSGG 1 cut(s) 579
NcoI CCATGG 1 cut(s) 121
NdeII GATC 5 cut(s) 15, 39, 325, 363, 546
NlaIII CATG 4 cut(s) 90, 125, 397, 889
NlaIV GGNNCC 3 cut(s) 456, 870, 871
NmuCI GTSAC 1 cut(s) 656
NsiI ATGCAT 1 cut(s) 439
NspI RCATGY 1 cut(s) 90
NspV TTCGAA 1 cut(s) 879
PaeI GCATGC 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 306
PfeI GAWTC 4 cut(s) 126, 403, 876, 881
PleI GAGTC 1 cut(s) 729
PpsI GAGTC 1 cut(s) 729
PpuMI RGGWCCY 1 cut(s) 455
Psp124BI GAGCTC 1 cut(s) 393
Psp5II RGGWCCY 1 cut(s) 455
Psp6I CCWGG 1 cut(s) 369
PspEI GGTNACC 1 cut(s) 656
PspGI CCWGG 1 cut(s) 369
PspN4I GGNNCC 3 cut(s) 456, 870, 871
PspOMI GGGCCC 1 cut(s) 868
PspPI GGNCC 3 cut(s) 455, 868, 869
PspPPI RGGWCCY 1 cut(s) 455
PsuI RGATCY 2 cut(s) 15, 325
PvuII CAGCTG 1 cut(s) 361
RsaI GTAC 2 cut(s) 689, 697
RsaNI GTAC 2 cut(s) 688, 696
RseI CAYNNNNRTG 2 cut(s) 534, 644
SacI GAGCTC 1 cut(s) 393
SalI GTCGAC 1 cut(s) 732
Sau3AI GATC 5 cut(s) 15, 39, 325, 363, 546
Sau96I GGNCC 3 cut(s) 455, 868, 869
ScaI AGTACT 1 cut(s) 697
SchI GAGTC 1 cut(s) 729
ScrFI CCNGG 2 cut(s) 371, 579
SduI GDGCHC 4 cut(s) 393, 497, 531, 872
SfaNI GCATC 4 cut(s) 289, 424, 526, 760
SfuI TTCGAA 1 cut(s) 879
SinI GGWCC 1 cut(s) 455
SmiMI CAYNNNNRTG 2 cut(s) 534, 644
SphI GCATGC 1 cut(s) 90
Sse9I AATT 6 cut(s) 111, 158, 184, 306, 587, 615
SspMI CTAG 2 cut(s) 219, 584
SstI GAGCTC 1 cut(s) 393
StyD4I CCNGG 2 cut(s) 369, 577
StyI CCWWGG 1 cut(s) 121
TaaI ACNGT 3 cut(s) 555, 624, 707
TaiI ACGT 1 cut(s) 511
TaqI TCGA 3 cut(s) 129, 733, 879
TasI AATT 6 cut(s) 111, 158, 184, 306, 587, 615
TatI WGTACW 1 cut(s) 695
TfiI GAWTC 4 cut(s) 126, 403, 876, 881
TscAI CASTG 1 cut(s) 538
TseFI GTSAC 1 cut(s) 656
Tsp45I GTSAC 1 cut(s) 656
TspDTI ATGAA 3 cut(s) 17, 356, 902
TspGWI ACGGA 1 cut(s) 806
TspRI CASTG 1 cut(s) 538
VpaK11BI GGWCC 1 cut(s) 455
XapI RAATTY 2 cut(s) 184, 587
XbaI TCTAGA 1 cut(s) 583
XceI RCATGY 1 cut(s) 90
XcmI CCANNNNNNNNNTGG 1 cut(s) 892
XmiI GTMKAC 1 cut(s) 733
XmnI GAANNNNTTC 1 cut(s) 306
XspI CTAG 2 cut(s) 219, 584
ZrmI AGTACT 1 cut(s) 697
Zsp2I ATGCAT 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.