Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008807

Physical Location & Seq

Genomic Coordinates Forward (+)

6170961 .. 6173598

Gene Structure 2638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g11320.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGGGAAGGTTTCGCCGAAAGAGAGGGGTGTGAAGAATTCGAAGCAGAGAAAGGGCTCCAGGGGGTCAGGGAAGAAGTATCTGAAGCCGGGGGCGCTTGCTCAGCTTAAGTACAGCAAGGCCAGTTCGGCGAAGGCGTGTACTGATCTGGGGAGGAAGAGAGTGGCTGTGGTGGAGACGAAGAAGGGTGATGATGTTGATTTGGGGATTGAAGATAGGGGTGTTATTGATAGGAGCCCTTTGATGCTTTCACCGGTGAATTTGGTTAGGCAGAGTAGTTTGTTGAAGACACCGAGGAGCCCTTTGATGTTGTCGCCTGTGAATCTGGTTAAGCAGAGTTGTTTGCTCAAAACACCAAGGACTCCTCTGATGTTGTCTCCTGTGGATTTCGTTAGGCAGAATAGTCTGACGAAAACACCAAAGACCCCCAGGTTGGAAGATTGTGACTCGGAGTCCAGGCTTGAGTCGCTTCCTATGGATTTACTGGTTAAATTATTGTGTCACCTGCACCATGACCAACTGAAGCCAGTGTTTCATGTTTCTCAAAGAATTAGAAAAGCTGTTATACTTGCAAGGCAGTATCACTTTAATTATACAACTCCAGATCGCTCTCGACAGGAGATGTTGAGAACGATGACGCCCCACCCCACTGAAGTCTGGCCTTTCAAAAGCAAGGGAGATGGCAAGGGTACATGGATACGAAGCCCACATACTCCAAAAGCACCAAGACATGGTCCCAGGCCACCATCTCGCCTCAAAGTTTCAGAAATACGGCAGGTTGCTGCAGTTCTCTTTCAGGAGTCAAATTTCCCCTCTAGATGCATGGTGCCATCTTCCTTACCAAAACCCCTTTGCAAATCTTTGGCTTCCAATCGAGTTTTGTTCTATGAGGAAGAGTTATGTCAGGCTGTGGCTCAGAATAAGCTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

311

Amino Acids

34.85

Weight (kDa)

10.23

Isoelectric Point (pI)

56.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35930 AT4G35930 AT4G35930 AT4G35930
fragaria_vesca	FvH4_1g11320 FvH4_1g11320
malus_domestica	MD02G1127300.v1.1 MD15G1241500.v1.1
prunus_persica	Prupe.6G141800_v2.0.a1 Prupe.7G172500_v2.0.a1
pyrus_communis	pycom02g09940 pycom15g21300
rosa_chinensis	RchiOBHm_Chr2g0098831
rosa_laevigata	RLG00000016829
rosa_multiflora	Rmu_sc0008564.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143690
rosa_rugosa	Rorug02G0074900
rosa_samantha	Rh1BG014500 Rh2AG122900 Rh2BG126400 Rh2CG127400 Rh2DG128500
rosa_wichuraiana	Rw0G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	513
Acc36I	ACCTGC	2 cut(s)	513, 766
AccB1I	GGYRCC	1 cut(s)	826
AccB7I	CCANNNNNTGG	1 cut(s)	731
AcsI	RAATTY	3 cut(s)	37, 259, 805
AcuI	CTGAAG	3 cut(s)	104, 542, 672
AcyI	GRCGYC	1 cut(s)	638
AfaI	GTAC	3 cut(s)	113, 142, 691
AfiI	CCNNNNNNNGG	2 cut(s)	433, 731
AflII	CTTAAG	1 cut(s)	107
AgeI	ACCGGT	1 cut(s)	253
AgsI	TTSAA	3 cut(s)	212, 286, 667
AhdI	GACNNNNNGTC	1 cut(s)	451
AjnI	CCWGG	4 cut(s)	59, 428, 455, 737
AluBI	AGCT	3 cut(s)	106, 560, 925
AluI	AGCT	3 cut(s)	106, 560, 925
Alw26I	GTCTC	2 cut(s)	170, 381
AoxI	GGCC	3 cut(s)	120, 659, 740
ApeKI	GCWGC	1 cut(s)	782
ApoI	RAATTY	3 cut(s)	37, 259, 805
AsiGI	ACCGGT	1 cut(s)	253
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	1 cut(s)	734
AsuC2I	CCSGG	1 cut(s)	90
AsuHPI	GGTGA	4 cut(s)	200, 243, 268, 494
AsuII	TTCGAA	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	734
BanI	GGYRCC	1 cut(s)	826
BanII	GRGCYC	3 cut(s)	59, 239, 302
BarI	GAAGNNNNNNTAC	2 cut(s)	694, 726
BbsI	GAAGAC	1 cut(s)	293
BbvI	GCAGC	1 cut(s)	769
BccI	CCATC	3 cut(s)	674, 754, 838
BceAI	ACGGC	1 cut(s)	788
BciT130I	CCWGG	4 cut(s)	61, 430, 457, 739
BciVI	GTATCC	1 cut(s)	690
BcnI	CCSGG	1 cut(s)	90
BcoDI	GTCTC	2 cut(s)	170, 381
BfaI	CTAG	1 cut(s)	816
BfmI	CTRYAG	1 cut(s)	783
BfoI	RGCGCY	1 cut(s)	98
BfrI	CTTAAG	1 cut(s)	107
BfuAI	ACCTGC	2 cut(s)	513, 766
BfuI	GTATCC	1 cut(s)	690
BglI	GCCNNNNNGGC	1 cut(s)	128
BisI	GCNGC	1 cut(s)	783
BlpI	GCTNAGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	784
Bme1390I	CCNGG	5 cut(s)	61, 90, 430, 457, 739
Bme18I	GGWCC	1 cut(s)	734
BmeRI	GACNNNNNGTC	1 cut(s)	451
BmgT120I	GGNCC	1 cut(s)	734
BmiI	GGNNCC	5 cut(s)	58, 236, 299, 736, 828
BmrFI	CCNGG	5 cut(s)	61, 90, 430, 457, 739
BmsI	GCATC	2 cut(s)	234, 809
BpiI	GAAGAC	1 cut(s)	293
BpmI	CTGGAG	2 cut(s)	43, 585
Bpu1102I	GCTNAGC	1 cut(s)	102
Bpu14I	TTCGAA	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	482
BpuMI	CCSGG	1 cut(s)	90
BsaHI	GRCGYC	1 cut(s)	638
BsaJI	CCNNGG	6 cut(s)	60, 89, 293, 356, 428, 737
BsaWI	WCCGGW	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	2 cut(s)	433, 731
Bse118I	RCCGGY	1 cut(s)	253
Bse1I	ACTGG	3 cut(s)	123, 489, 527
BseBI	CCWGG	4 cut(s)	61, 430, 457, 739
BseDI	CCNNGG	6 cut(s)	60, 89, 293, 356, 428, 737
BseLI	CCNNNNNNNGG	2 cut(s)	433, 731
BseMII	CTCAG	2 cut(s)	116, 929
BseNI	ACTGG	3 cut(s)	123, 489, 527
BseRI	GAGGAG	2 cut(s)	310, 354
BseXI	GCAGC	1 cut(s)	769
BsgI	GTGCAG	1 cut(s)	491
BshFI	GGCC	3 cut(s)	122, 661, 742
BshNI	GGYRCC	1 cut(s)	826
BshTI	ACCGGT	1 cut(s)	253
BsiSI	CCGG	2 cut(s)	89, 254
BslFI	GGGAC	1 cut(s)	720
BslI	CCNNNNNNNGG	2 cut(s)	433, 731
BsmAI	GTCTC	2 cut(s)	170, 381
BsmBI	CGTCTC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	720
BsnI	GGCC	3 cut(s)	122, 661, 742
Bsp119I	TTCGAA	1 cut(s)	41
Bsp1286I	GDGCHC	3 cut(s)	59, 239, 302
Bsp143I	GATC	2 cut(s)	145, 604
Bsp1720I	GCTNAGC	1 cut(s)	102
BspANI	GGCC	3 cut(s)	122, 661, 742
BspCNI	CTCAG	2 cut(s)	115, 928
BspLI	GGNNCC	5 cut(s)	58, 236, 299, 736, 828
BspMAI	CTGCAG	1 cut(s)	787
BspMI	ACCTGC	2 cut(s)	513, 766
BspT104I	TTCGAA	1 cut(s)	41
BspT107I	GGYRCC	1 cut(s)	826
BspTI	CTTAAG	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	253
BsrI	ACTGG	3 cut(s)	123, 489, 527
BssAI	RCCGGY	1 cut(s)	253
BssECI	CCNNGG	6 cut(s)	60, 89, 293, 356, 428, 737
BssMI	GATC	2 cut(s)	145, 604
BssNI	GRCGYC	1 cut(s)	638
BssT1I	CCWWGG	1 cut(s)	356
Bst2UI	CCWGG	4 cut(s)	61, 430, 457, 739
Bst6I	CTCTTC	2 cut(s)	152, 888
BstACI	GRCGYC	1 cut(s)	638
BstAFI	CTTAAG	1 cut(s)	107
BstBI	TTCGAA	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	2 cut(s)	102, 915
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	2 cut(s)	148, 607
BstMAI	GTCTC	2 cut(s)	170, 381
BstMBI	GATC	2 cut(s)	145, 604
BstMWI	GCNNNNNNNGC	4 cut(s)	94, 103, 128, 466
BstNI	CCWGG	4 cut(s)	61, 430, 457, 739
BstSCI	CCNGG	5 cut(s)	59, 88, 428, 455, 737
BstSFI	CTRYAG	1 cut(s)	783
BstV1I	GCAGC	1 cut(s)	769
BstV2I	GAAGAC	1 cut(s)	293
BsuI	GTATCC	1 cut(s)	690
BsuRI	GGCC	3 cut(s)	122, 661, 742
BtsIMutI	CAGTG	2 cut(s)	534, 648
BveI	ACCTGC	2 cut(s)	513, 766
Cac8I	GCNNGC	1 cut(s)	99
CfoI	GCGC	1 cut(s)	97
Cfr10I	RCCGGY	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	734
CseI	GACGC	1 cut(s)	646
Csp6I	GTAC	3 cut(s)	112, 141, 690
CspAI	ACCGGT	1 cut(s)	253
CviAII	CATG	5 cut(s)	512, 536, 693, 731, 823
CviQI	GTAC	3 cut(s)	112, 141, 690
DdeI	CTNAG	2 cut(s)	102, 915
DpnI	GATC	2 cut(s)	147, 606
DpnII	GATC	2 cut(s)	145, 604
DriI	GACNNNNNGTC	1 cut(s)	451
Eam1104I	CTCTTC	2 cut(s)	152, 888
Eam1105I	GACNNNNNGTC	1 cut(s)	451
EarI	CTCTTC	2 cut(s)	152, 888
Eco130I	CCWWGG	1 cut(s)	356
Eco24I	GRGCYC	3 cut(s)	59, 239, 302
Eco47I	GGWCC	1 cut(s)	734
Eco57I	CTGAAG	3 cut(s)	104, 542, 672
EcoRI	GAATTC	1 cut(s)	37
EcoRII	CCWGG	4 cut(s)	59, 428, 455, 737
EcoT14I	CCWWGG	1 cut(s)	356
EcoT22I	ATGCAT	1 cut(s)	824
EcoT38I	GRGCYC	3 cut(s)	59, 239, 302
ErhI	CCWWGG	1 cut(s)	356
Esp3I	CGTCTC	1 cut(s)	170
FaeI	CATG	5 cut(s)	515, 539, 696, 734, 826
FaqI	GGGAC	1 cut(s)	720
FatI	CATG	5 cut(s)	511, 535, 692, 730, 822
Fnu4HI	GCNGC	1 cut(s)	783
FriOI	GRGCYC	3 cut(s)	59, 239, 302
Fsp4HI	GCNGC	1 cut(s)	783
FspBI	CTAG	1 cut(s)	816
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	1 cut(s)	783
GsuI	CTGGAG	2 cut(s)	43, 585
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	3 cut(s)	122, 661, 742
HapII	CCGG	2 cut(s)	89, 254
HgaI	GACGC	1 cut(s)	646
HhaI	GCGC	1 cut(s)	97
Hin1I	GRCGYC	1 cut(s)	638
Hin1II	CATG	5 cut(s)	515, 539, 696, 734, 826
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HindIII	AAGCTT	1 cut(s)	923
HinfI	GANTC	6 cut(s)	322, 361, 446, 452, 464, 800
HpaII	CCGG	2 cut(s)	89, 254
HphI	GGTGA	4 cut(s)	200, 243, 268, 494
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188I	TCNGA	6 cut(s)	84, 369, 408, 451, 766, 918
Hpy188III	TCNNGA	4 cut(s)	602, 612, 797, 816
Hpy8I	GTNNAC	1 cut(s)	141
HpyAV	CCTTC	2 cut(s)	127, 178
HpyCH4V	TGCA	5 cut(s)	508, 572, 785, 822, 855
HpyF10VI	GCNNNNNNNGC	4 cut(s)	94, 103, 128, 466
HpyF3I	CTNAG	2 cut(s)	102, 915
Hsp92I	GRCGYC	1 cut(s)	638
Hsp92II	CATG	5 cut(s)	515, 539, 696, 734, 826
HspAI	GCGC	1 cut(s)	95
Kzo9I	GATC	2 cut(s)	145, 604
LmnI	GCTCC	3 cut(s)	62, 234, 297
Lsp1109I	GCAGC	1 cut(s)	769
LweI	GCATC	2 cut(s)	234, 809
MaeI	CTAG	1 cut(s)	816
MaeIII	GTNAC	2 cut(s)	443, 500
MalI	GATC	2 cut(s)	147, 606
MboI	GATC	2 cut(s)	145, 604
MboII	GAAGA	9 cut(s)	46, 85, 169, 193, 224, 298, 449, 825, 905
MhlI	GDGCHC	3 cut(s)	59, 239, 302
MluCI	AATT	6 cut(s)	37, 259, 491, 549, 589, 805
MlyI	GAGTC	5 cut(s)	355, 440, 461, 473, 809
MmeI	TCCRAC	1 cut(s)	414
MnlI	CCTC	7 cut(s)	18, 147, 288, 375, 764, 823, 883
Mph1103I	ATGCAT	1 cut(s)	824
MseI	TTAA	5 cut(s)	108, 330, 489, 588, 931
MspCI	CTTAAG	1 cut(s)	107
MspI	CCGG	2 cut(s)	89, 254
MspR9I	CCNGG	5 cut(s)	61, 90, 430, 457, 739
MvaI	CCWGG	4 cut(s)	61, 430, 457, 739
MwoI	GCNNNNNNNGC	4 cut(s)	94, 103, 128, 466
NciI	CCSGG	1 cut(s)	90
NdeII	GATC	2 cut(s)	145, 604
NlaIII	CATG	5 cut(s)	515, 539, 696, 734, 826
NlaIV	GGNNCC	5 cut(s)	58, 236, 299, 736, 828
NmuCI	GTSAC	2 cut(s)	443, 500
NsiI	ATGCAT	1 cut(s)	824
NspV	TTCGAA	1 cut(s)	41
PaqCI	CACCTGC	1 cut(s)	513
PcsI	WCGNNNNNNNCGW	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	322
PflFI	GACNNNGTC	1 cut(s)	732
PflMI	CCANNNNNTGG	1 cut(s)	731
PinAI	ACCGGT	1 cut(s)	253
PkrI	GCNGC	1 cut(s)	784
PleI	GAGTC	5 cut(s)	355, 440, 460, 472, 808
PpsI	GAGTC	5 cut(s)	355, 440, 460, 472, 808
Psp6I	CCWGG	4 cut(s)	59, 428, 455, 737
PspGI	CCWGG	4 cut(s)	59, 428, 455, 737
PspN4I	GGNNCC	5 cut(s)	58, 236, 299, 736, 828
PspPI	GGNCC	1 cut(s)	734
PstI	CTGCAG	1 cut(s)	787
PsyI	GACNNNGTC	1 cut(s)	732
RsaI	GTAC	3 cut(s)	113, 142, 691
RsaNI	GTAC	3 cut(s)	112, 141, 690
SaqAI	TTAA	5 cut(s)	108, 330, 489, 588, 931
SatI	GCNGC	1 cut(s)	783
Sau3AI	GATC	2 cut(s)	145, 604
Sau96I	GGNCC	1 cut(s)	734
SchI	GAGTC	5 cut(s)	355, 440, 461, 473, 809
ScrFI	CCNGG	5 cut(s)	61, 90, 430, 457, 739
SduI	GDGCHC	3 cut(s)	59, 239, 302
SetI	ASST	7 cut(s)	12, 108, 434, 507, 562, 780, 927
SfaNI	GCATC	2 cut(s)	234, 809
SfcI	CTRYAG	1 cut(s)	783
SfuI	TTCGAA	1 cut(s)	41
SgrAI	CRCCGGYG	1 cut(s)	253
SinI	GGWCC	1 cut(s)	734
SmlI	CTYRAG	2 cut(s)	107, 461
SmoI	CTYRAG	2 cut(s)	107, 461
Sse9I	AATT	6 cut(s)	37, 259, 491, 549, 589, 805
SspMI	CTAG	1 cut(s)	816
StyD4I	CCNGG	5 cut(s)	59, 88, 428, 455, 737
StyI	CCWWGG	1 cut(s)	356
TaqI	TCGA	3 cut(s)	41, 613, 874
TasI	AATT	6 cut(s)	37, 259, 491, 549, 589, 805
TatI	WGTACW	2 cut(s)	111, 140
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	5 cut(s)	108, 330, 489, 588, 931
Tru9I	TTAA	5 cut(s)	108, 330, 489, 588, 931
TscAI	CASTG	2 cut(s)	534, 655
TseFI	GTSAC	2 cut(s)	443, 500
TseI	GCWGC	1 cut(s)	782
Tsp45I	GTSAC	2 cut(s)	443, 500
TspDTI	ATGAA	1 cut(s)	524
TspRI	CASTG	2 cut(s)	534, 655
Tth111I	GACNNNGTC	1 cut(s)	732
Van91I	CCANNNNNTGG	1 cut(s)	731
Vha464I	CTTAAG	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	734
XapI	RAATTY	3 cut(s)	37, 259, 805
XbaI	TCTAGA	1 cut(s)	815
XspI	CTAG	1 cut(s)	816
Zsp2I	ATGCAT	1 cut(s)	824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.