Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0008807

Physical Location & Seq

Genomic Coordinates Forward (+)

11149204 .. 11152973

Gene Structure 3770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG122900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGGGAAGGTTTCGCCGAAAGAGAGGGGTTTGAAGAATTCGAAGCAGAAGAAGGGTTCCAGGGGCTCAGGGAACAAGTATCTGAAGCCGGGTGCTCTTGCCCAGCTAAAGTACAGCAAGGCCAGTTCTGCTAAGCCGTGTACTGATCTGGGGAGGAAGCGAGTGGCTGTAGTGGAGACGAAGAAGGATGGTGTTGATTTGGGGATTGAAGATAGGGCTAGCCCTTTGATGCCGTCGCCTGTCAATTTGGTCAAGCAGGGTAGTTTGTTGAAAACGCCAAGGACTCCTTTGATGTTATCGCCGGTGAATTCGGTTAAGCAGACTAGTTTGCTTAAAACACCGAGGACCCCTTTGATGCTGTCTCCTGTGGATTTTGTTAGGCAGAATAGTCTGATGAAAACACCAATGACCCCCAGAATGGAAGATTGTGAGTCCGAGTCCAGGCTTGAGTCGCTTCCCATGGATTTACTGGTTAAATTATTGTGTCACCTGCACCATGACCAACTGAAGCCGGTGTTTCATGTTTCTCAAAGAATTAGGAAAGCTGTTATACTTGCAAGGCAGTATCACTTTAATTATACAACTCCAGATCGCTCTCGACAGGAGATGTTGAGAACAATGACGCCCCACCCCACTGAACACTGGCCTTTCAAAAGGTTGATATTTCGAACGAACAGTTTTATTGCTCTCTACCCAACTATTAGCTTTGCTCTTCATTACATTATGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

243

Amino Acids

27.65

Weight (kDa)

10.27

Isoelectric Point (pI)

42.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35930 AT4G35930 AT4G35930 AT4G35930
fragaria_vesca	FvH4_1g11320 FvH4_1g11320
malus_domestica	MD02G1127300.v1.1 MD15G1241500.v1.1
prunus_persica	Prupe.6G141800_v2.0.a1 Prupe.7G172500_v2.0.a1
pyrus_communis	pycom02g09940 pycom15g21300
rosa_chinensis	RchiOBHm_Chr2g0098831
rosa_laevigata	RLG00000016829
rosa_multiflora	Rmu_sc0008564.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143690
rosa_rugosa	Rorug02G0074900
rosa_samantha	Rh1BG014500 Rh2AG122900 Rh2BG126400 Rh2CG127400 Rh2DG128500
rosa_wichuraiana	Rw0G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	498
Acc36I	ACCTGC	1 cut(s)	498
AcsI	RAATTY	2 cut(s)	37, 307
AcuI	CTGAAG	2 cut(s)	104, 527
AcyI	GRCGYC	1 cut(s)	623
AfaI	GTAC	2 cut(s)	113, 142
AfiI	CCNNNNNNNGG	2 cut(s)	418, 441
AgsI	TTSAA	4 cut(s)	34, 209, 271, 652
AhlI	ACTAGT	1 cut(s)	323
AjnI	CCWGG	2 cut(s)	59, 440
AluBI	AGCT	3 cut(s)	106, 545, 705
AluI	AGCT	3 cut(s)	106, 545, 705
Alw21I	GWGCWC	1 cut(s)	97
Alw26I	GTCTC	2 cut(s)	170, 366
AoxI	GGCC	2 cut(s)	120, 644
ApoI	RAATTY	2 cut(s)	37, 307
AspS9I	GGNCC	1 cut(s)	345
AsuC2I	CCSGG	1 cut(s)	90
AsuHPI	GGTGA	2 cut(s)	316, 479
AsuII	TTCGAA	2 cut(s)	41, 667
AsuNHI	GCTAGC	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	345
BanII	GRGCYC	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	97
BccI	CCATC	1 cut(s)	182
BceAI	ACGGC	2 cut(s)	121, 217
BciT130I	CCWGG	2 cut(s)	61, 442
BcnI	CCSGG	1 cut(s)	90
BcoDI	GTCTC	2 cut(s)	170, 366
BcuI	ACTAGT	1 cut(s)	323
BfaI	CTAG	2 cut(s)	219, 324
BfmI	CTRYAG	1 cut(s)	168
BfuAI	ACCTGC	1 cut(s)	498
BlpI	GCTNAGC	1 cut(s)	132
Bme1390I	CCNGG	3 cut(s)	61, 90, 442
Bme18I	GGWCC	1 cut(s)	345
BmgT120I	GGNCC	1 cut(s)	345
BmiI	GGNNCC	2 cut(s)	58, 347
BmrFI	CCNGG	3 cut(s)	61, 90, 442
BmsI	GCATC	2 cut(s)	219, 345
BmtI	GCTAGC	1 cut(s)	222
BpmI	CTGGAG	1 cut(s)	570
Bpu10I	CCTNAGC	1 cut(s)	67
Bpu1102I	GCTNAGC	1 cut(s)	132
Bpu14I	TTCGAA	2 cut(s)	41, 667
BpuEI	CTTGAG	1 cut(s)	467
BpuMI	CCSGG	1 cut(s)	90
BsaHI	GRCGYC	1 cut(s)	623
BsaJI	CCNNGG	4 cut(s)	60, 278, 341, 459
Bsc4I	CCNNNNNNNGG	2 cut(s)	418, 441
Bse118I	RCCGGY	2 cut(s)	301, 511
Bse1I	ACTGG	3 cut(s)	123, 474, 647
BseBI	CCWGG	2 cut(s)	61, 442
BseDI	CCNNGG	4 cut(s)	60, 278, 341, 459
BseGI	GGATG	1 cut(s)	193
BseLI	CCNNNNNNNGG	2 cut(s)	418, 441
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	3 cut(s)	123, 474, 647
BseYI	CCCAGC	1 cut(s)	102
BsgI	GTGCAG	1 cut(s)	476
BshFI	GGCC	2 cut(s)	122, 646
BsiHKAI	GWGCWC	1 cut(s)	97
BsiSI	CCGG	3 cut(s)	89, 302, 512
BslI	CCNNNNNNNGG	2 cut(s)	418, 441
BsmAI	GTCTC	2 cut(s)	170, 366
BsmBI	CGTCTC	1 cut(s)	170
BsnI	GGCC	2 cut(s)	122, 646
Bsp119I	TTCGAA	2 cut(s)	41, 667
Bsp1286I	GDGCHC	2 cut(s)	68, 97
Bsp143I	GATC	2 cut(s)	145, 589
Bsp1720I	GCTNAGC	1 cut(s)	132
Bsp19I	CCATGG	1 cut(s)	459
BspANI	GGCC	2 cut(s)	122, 646
BspCNI	CTCAG	1 cut(s)	80
BspLI	GGNNCC	2 cut(s)	58, 347
BspMI	ACCTGC	1 cut(s)	498
BspOI	GCTAGC	1 cut(s)	222
BspQI	GCTCTTC	1 cut(s)	717
BspT104I	TTCGAA	2 cut(s)	41, 667
BsrFI	RCCGGY	2 cut(s)	301, 511
BsrI	ACTGG	3 cut(s)	123, 474, 647
BssAI	RCCGGY	2 cut(s)	301, 511
BssECI	CCNNGG	4 cut(s)	60, 278, 341, 459
BssMI	GATC	2 cut(s)	145, 589
BssNI	GRCGYC	1 cut(s)	623
BssT1I	CCWWGG	2 cut(s)	278, 459
Bst2UI	CCWGG	2 cut(s)	61, 442
Bst4CI	ACNGT	1 cut(s)	677
Bst6I	CTCTTC	1 cut(s)	717
BstACI	GRCGYC	1 cut(s)	623
BstBI	TTCGAA	2 cut(s)	41, 667
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	2 cut(s)	67, 132
BstDSI	CCRYGG	1 cut(s)	459
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	2 cut(s)	148, 592
BstMAI	GTCTC	2 cut(s)	170, 366
BstMBI	GATC	2 cut(s)	145, 589
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 451
BstNI	CCWGG	2 cut(s)	61, 442
BstSCI	CCNGG	3 cut(s)	59, 88, 440
BstSFI	CTRYAG	1 cut(s)	168
BsuRI	GGCC	2 cut(s)	122, 646
BtgI	CCRYGG	1 cut(s)	459
BtsCI	GGATG	1 cut(s)	193
BtsIMutI	CAGTG	2 cut(s)	633, 640
BveI	ACCTGC	1 cut(s)	498
Cac8I	GCNNGC	1 cut(s)	220
Cfr10I	RCCGGY	2 cut(s)	301, 511
Cfr13I	GGNCC	1 cut(s)	345
CseI	GACGC	1 cut(s)	631
Csp6I	GTAC	2 cut(s)	112, 141
CviAII	CATG	3 cut(s)	460, 497, 521
CviQI	GTAC	2 cut(s)	112, 141
DdeI	CTNAG	2 cut(s)	67, 132
DpnI	GATC	2 cut(s)	147, 591
DpnII	GATC	2 cut(s)	145, 589
Eam1104I	CTCTTC	1 cut(s)	717
EarI	CTCTTC	1 cut(s)	717
Eco130I	CCWWGG	2 cut(s)	278, 459
Eco24I	GRGCYC	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	345
Eco57I	CTGAAG	2 cut(s)	104, 527
EcoO109I	RGGNCCY	1 cut(s)	345
EcoRI	GAATTC	2 cut(s)	37, 307
EcoRII	CCWGG	2 cut(s)	59, 440
EcoT14I	CCWWGG	2 cut(s)	278, 459
EcoT38I	GRGCYC	1 cut(s)	68
ErhI	CCWWGG	2 cut(s)	278, 459
Esp3I	CGTCTC	1 cut(s)	170
FaeI	CATG	3 cut(s)	463, 500, 524
FaiI	YATR	6 cut(s)	461, 498, 522, 551, 579, 725
FalI	AAGNNNNNCTT	2 cut(s)	271, 303
FatI	CATG	3 cut(s)	459, 496, 520
FokI	GGATG	1 cut(s)	200
FriOI	GRGCYC	1 cut(s)	68
FspBI	CTAG	2 cut(s)	219, 324
GsaI	CCCAGC	1 cut(s)	106
GsuI	CTGGAG	1 cut(s)	570
HaeIII	GGCC	2 cut(s)	122, 646
HapII	CCGG	3 cut(s)	89, 302, 512
HgaI	GACGC	1 cut(s)	631
Hin1I	GRCGYC	1 cut(s)	623
Hin1II	CATG	3 cut(s)	463, 500, 524
HinfI	GANTC	4 cut(s)	283, 431, 437, 449
HpaII	CCGG	3 cut(s)	89, 302, 512
HphI	GGTGA	2 cut(s)	316, 479
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188I	TCNGA	3 cut(s)	84, 393, 436
Hpy188III	TCNNGA	2 cut(s)	587, 597
Hpy8I	GTNNAC	1 cut(s)	141
Hpy99I	CGWCG	1 cut(s)	238
HpyAV	CCTTC	2 cut(s)	46, 178
HpyCH4III	ACNGT	1 cut(s)	677
HpyCH4V	TGCA	2 cut(s)	493, 557
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 451
HpyF3I	CTNAG	2 cut(s)	67, 132
Hsp92I	GRCGYC	1 cut(s)	623
Hsp92II	CATG	3 cut(s)	463, 500, 524
Kzo9I	GATC	2 cut(s)	145, 589
LguI	GCTCTTC	1 cut(s)	717
LweI	GCATC	2 cut(s)	219, 345
MaeI	CTAG	2 cut(s)	219, 324
MaeIII	GTNAC	1 cut(s)	485
MalI	GATC	2 cut(s)	147, 591
MboI	GATC	2 cut(s)	145, 589
MboII	GAAGA	6 cut(s)	46, 61, 193, 221, 434, 704
MhlI	GDGCHC	2 cut(s)	68, 97
MluCI	AATT	6 cut(s)	37, 244, 307, 476, 534, 574
MlyI	GAGTC	4 cut(s)	277, 440, 446, 458
MnlI	CCTC	3 cut(s)	18, 147, 336
MseI	TTAA	5 cut(s)	315, 333, 474, 573, 730
MspI	CCGG	3 cut(s)	89, 302, 512
MspR9I	CCNGG	3 cut(s)	61, 90, 442
MvaI	CCWGG	2 cut(s)	61, 442
MwoI	GCNNNNNNNGC	2 cut(s)	128, 451
NciI	CCSGG	1 cut(s)	90
NcoI	CCATGG	1 cut(s)	459
NdeII	GATC	2 cut(s)	145, 589
NheI	GCTAGC	1 cut(s)	218
NlaIII	CATG	3 cut(s)	463, 500, 524
NlaIV	GGNNCC	2 cut(s)	58, 347
NmuCI	GTSAC	1 cut(s)	485
NspV	TTCGAA	2 cut(s)	41, 667
PaqCI	CACCTGC	1 cut(s)	498
PciSI	GCTCTTC	1 cut(s)	717
PleI	GAGTC	4 cut(s)	277, 439, 445, 457
PpsI	GAGTC	4 cut(s)	277, 439, 445, 457
PpuMI	RGGWCCY	1 cut(s)	345
Psp5II	RGGWCCY	1 cut(s)	345
Psp6I	CCWGG	2 cut(s)	59, 440
PspFI	CCCAGC	1 cut(s)	102
PspGI	CCWGG	2 cut(s)	59, 440
PspN4I	GGNNCC	2 cut(s)	58, 347
PspPI	GGNCC	1 cut(s)	345
PspPPI	RGGWCCY	1 cut(s)	345
RsaI	GTAC	2 cut(s)	113, 142
RsaNI	GTAC	2 cut(s)	112, 141
SapI	GCTCTTC	1 cut(s)	717
SaqAI	TTAA	5 cut(s)	315, 333, 474, 573, 730
Sau3AI	GATC	2 cut(s)	145, 589
Sau96I	GGNCC	1 cut(s)	345
SchI	GAGTC	4 cut(s)	277, 440, 446, 458
ScrFI	CCNGG	3 cut(s)	61, 90, 442
SduI	GDGCHC	2 cut(s)	68, 97
SetI	ASST	6 cut(s)	12, 108, 492, 547, 659, 707
SfaNI	GCATC	2 cut(s)	219, 345
SfcI	CTRYAG	1 cut(s)	168
SfuI	TTCGAA	2 cut(s)	41, 667
SgrAI	CRCCGGYG	1 cut(s)	301
SinI	GGWCC	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
SpeI	ACTAGT	1 cut(s)	323
Sse9I	AATT	6 cut(s)	37, 244, 307, 476, 534, 574
SspMI	CTAG	2 cut(s)	219, 324
StyD4I	CCNGG	3 cut(s)	59, 88, 440
StyI	CCWWGG	2 cut(s)	278, 459
TaaI	ACNGT	1 cut(s)	677
TaqI	TCGA	3 cut(s)	41, 598, 667
TasI	AATT	6 cut(s)	37, 244, 307, 476, 534, 574
TatI	WGTACW	2 cut(s)	111, 140
Tru1I	TTAA	5 cut(s)	315, 333, 474, 573, 730
Tru9I	TTAA	5 cut(s)	315, 333, 474, 573, 730
TscAI	CASTG	2 cut(s)	640, 647
TseFI	GTSAC	1 cut(s)	485
Tsp45I	GTSAC	1 cut(s)	485
TspDTI	ATGAA	3 cut(s)	410, 509, 704
TspRI	CASTG	2 cut(s)	640, 647
VpaK11BI	GGWCC	1 cut(s)	345
XapI	RAATTY	2 cut(s)	37, 307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	466
XspI	CTAG	2 cut(s)	219, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.