Rh2DG128500

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0008807
Physical Location & Seq
Forward (+)
10746099 .. 10748393
2295 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG128500.1

Sequence Viewer

Length: 894 bp
ATGGGGAAGGTTTCACCGAAAGAGAGGGGTTTGAAGAATTCGAAGCAGAAGAAGGGTTCCAGGGGTTCAGGGAACAAGTATCTGAAGCCCGGTGCTCTTGCTCAGCTAAAGTACAGCAAGGCCAGTTCTGCTAAGCCGTGTACTGATCTGGGGAGGAAGCGAGTGGCTGTAGTGGAGACGAAGAAGGATGATGTTGATTTGGGGATTGAAGATAGGGCTAGCCCTTTGATGCCGTCGCCTGTGAATTTGGTTAAGCAGAGTAGTTTGTTGAAAACGCCGGTAAATTCGGTTAAGCAGAGTAGTTTGCTTAAAACACCGAGGACCCCTTTGATGCTGTCTCCTGTGGATTTCGTTAGGCAGAATAGTCTGATGAAAACACCAATGACCCCCAGAATGGAAGATTGTGAGTCGGAGTCCAGGCTTGAGTCGCTTCCCATGGATTTACTGGTTAAATTATTGTGTCACCTGCACCATGACCAACTGAAGCCGGTGTTTCATGTTTCTCAAAGAATTAGGAAAGCTGTTATACTTGCAAGGCAGTATCACTTTAATTATACAACTCCAGATCGCTCTCGACAGGAGATGTTGAGAACAATGACGCCCCACCCCACTGAACACTGGCCTTTCAAAAGCAAGGGAGATGGCAAGGGTACATGGATACGAAGCCCGCATACTCCAAAAGCACCAAGACATGGTCCCAGGCCACCATCTCGCCTCAAAGTTTCAGAAATGCGGCAGGTTGCTGCAGTTCTCTTTCAGGAGTCAAATTTCCCTTCTAGATGCATGGTGCCATCTGCCTTACCAAAGCCCCTGTGCAAATCTTTGGCTTCCAATAGAGTTTTGTTCTATGAGGAAGAGTTATGTCAGGCTGTGGCTCAGAATAAGCTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

297

Amino Acids

33.46

Weight (kDa)

10.13

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 474
Acc36I ACCTGC 2 cut(s) 474, 727
AccB1I GGYRCC 1 cut(s) 787
AccB7I CCANNNNNTGG 1 cut(s) 692
AciI CCGC 2 cut(s) 668, 733
AcsI RAATTY 4 cut(s) 37, 244, 283, 766
AcuI CTGAAG 2 cut(s) 104, 503
AcyI GRCGYC 1 cut(s) 599
AfaI GTAC 3 cut(s) 113, 142, 652
AfiI CCNNNNNNNGG 2 cut(s) 394, 692
AgsI TTSAA 4 cut(s) 34, 209, 271, 628
AjnI CCWGG 3 cut(s) 59, 416, 698
AluBI AGCT 3 cut(s) 106, 521, 886
AluI AGCT 3 cut(s) 106, 521, 886
Alw21I GWGCWC 1 cut(s) 97
Alw26I GTCTC 2 cut(s) 170, 342
AoxI GGCC 3 cut(s) 120, 620, 701
ApeKI GCWGC 1 cut(s) 743
ApoI RAATTY 4 cut(s) 37, 244, 283, 766
AspS9I GGNCC 2 cut(s) 321, 695
AsuC2I CCSGG 1 cut(s) 90
AsuHPI GGTGA 2 cut(s) 6, 455
AsuII TTCGAA 1 cut(s) 41
AsuNHI GCTAGC 1 cut(s) 218
AvaII GGWCC 2 cut(s) 321, 695
BanI GGYRCC 1 cut(s) 787
BarI GAAGNNNNNNTAC 2 cut(s) 655, 687
Bbv12I GWGCWC 1 cut(s) 97
BbvI GCAGC 1 cut(s) 730
BccI CCATC 3 cut(s) 635, 715, 799
BceAI ACGGC 2 cut(s) 121, 217
BciT130I CCWGG 3 cut(s) 61, 418, 700
BciVI GTATCC 1 cut(s) 651
BcnI CCSGG 1 cut(s) 90
BcoDI GTCTC 2 cut(s) 170, 342
BfaI CTAG 2 cut(s) 219, 777
BfmI CTRYAG 2 cut(s) 168, 744
BfuAI ACCTGC 2 cut(s) 474, 727
BfuI GTATCC 1 cut(s) 651
BisI GCNGC 2 cut(s) 734, 744
BlpI GCTNAGC 2 cut(s) 102, 132
BlsI GCNGC 2 cut(s) 735, 745
Bme1390I CCNGG 4 cut(s) 61, 90, 418, 700
Bme18I GGWCC 2 cut(s) 321, 695
BmgT120I GGNCC 2 cut(s) 321, 695
BmiI GGNNCC 4 cut(s) 58, 323, 697, 789
BmrFI CCNGG 4 cut(s) 61, 90, 418, 700
BmsI GCATC 3 cut(s) 219, 321, 770
BmtI GCTAGC 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 546
Bpu1102I GCTNAGC 2 cut(s) 102, 132
Bpu14I TTCGAA 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 443
BpuMI CCSGG 1 cut(s) 90
BsaHI GRCGYC 1 cut(s) 599
BsaJI CCNNGG 4 cut(s) 60, 317, 435, 698
Bsc4I CCNNNNNNNGG 2 cut(s) 394, 692
Bse118I RCCGGY 2 cut(s) 277, 487
Bse1I ACTGG 3 cut(s) 123, 450, 623
BseBI CCWGG 3 cut(s) 61, 418, 700
BseDI CCNNGG 4 cut(s) 60, 317, 435, 698
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 2 cut(s) 394, 692
BseMII CTCAG 2 cut(s) 116, 890
BseNI ACTGG 3 cut(s) 123, 450, 623
BseXI GCAGC 1 cut(s) 730
BsgI GTGCAG 1 cut(s) 452
BshFI GGCC 3 cut(s) 122, 622, 703
BshNI GGYRCC 1 cut(s) 787
BsiHKAI GWGCWC 1 cut(s) 97
BsiSI CCGG 3 cut(s) 90, 278, 488
BslFI GGGAC 1 cut(s) 681
BslI CCNNNNNNNGG 2 cut(s) 394, 692
BsmAI GTCTC 2 cut(s) 170, 342
BsmBI CGTCTC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 681
BsnI GGCC 3 cut(s) 122, 622, 703
Bsp119I TTCGAA 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 97
Bsp143I GATC 2 cut(s) 145, 565
Bsp1720I GCTNAGC 2 cut(s) 102, 132
Bsp19I CCATGG 1 cut(s) 435
BspACI CCGC 2 cut(s) 668, 733
BspANI GGCC 3 cut(s) 122, 622, 703
BspCNI CTCAG 2 cut(s) 115, 889
BspLI GGNNCC 4 cut(s) 58, 323, 697, 789
BspMAI CTGCAG 1 cut(s) 748
BspMI ACCTGC 2 cut(s) 474, 727
BspOI GCTAGC 1 cut(s) 222
BspT104I TTCGAA 1 cut(s) 41
BspT107I GGYRCC 1 cut(s) 787
BsrFI RCCGGY 2 cut(s) 277, 487
BsrI ACTGG 3 cut(s) 123, 450, 623
BssAI RCCGGY 2 cut(s) 277, 487
BssECI CCNNGG 4 cut(s) 60, 317, 435, 698
BssMI GATC 2 cut(s) 145, 565
BssNI GRCGYC 1 cut(s) 599
BssT1I CCWWGG 1 cut(s) 435
Bst2UI CCWGG 3 cut(s) 61, 418, 700
Bst6I CTCTTC 1 cut(s) 849
BstACI GRCGYC 1 cut(s) 599
BstBI TTCGAA 1 cut(s) 41
BstC8I GCNNGC 2 cut(s) 220, 668
BstDEI CTNAG 3 cut(s) 102, 132, 876
BstDSI CCRYGG 1 cut(s) 435
BstF5I GGATG 1 cut(s) 193
BstKTI GATC 2 cut(s) 148, 568
BstMAI GTCTC 2 cut(s) 170, 342
BstMBI GATC 2 cut(s) 145, 565
BstMWI GCNNNNNNNGC 2 cut(s) 128, 427
BstNI CCWGG 3 cut(s) 61, 418, 700
BstSCI CCNGG 4 cut(s) 59, 88, 416, 698
BstSFI CTRYAG 2 cut(s) 168, 744
BstV1I GCAGC 1 cut(s) 730
BsuI GTATCC 1 cut(s) 651
BsuRI GGCC 3 cut(s) 122, 622, 703
BtgI CCRYGG 1 cut(s) 435
BtsCI GGATG 1 cut(s) 193
BtsIMutI CAGTG 2 cut(s) 609, 616
BveI ACCTGC 2 cut(s) 474, 727
Cac8I GCNNGC 2 cut(s) 220, 668
Cfr10I RCCGGY 2 cut(s) 277, 487
Cfr13I GGNCC 2 cut(s) 321, 695
CseI GACGC 1 cut(s) 607
Csp6I GTAC 3 cut(s) 112, 141, 651
CviAII CATG 6 cut(s) 436, 473, 497, 654, 692, 784
CviQI GTAC 3 cut(s) 112, 141, 651
DdeI CTNAG 3 cut(s) 102, 132, 876
DpnI GATC 2 cut(s) 147, 567
DpnII GATC 2 cut(s) 145, 565
Eam1104I CTCTTC 1 cut(s) 849
EarI CTCTTC 1 cut(s) 849
Eco130I CCWWGG 1 cut(s) 435
Eco47I GGWCC 2 cut(s) 321, 695
Eco57I CTGAAG 2 cut(s) 104, 503
EcoO109I RGGNCCY 1 cut(s) 321
EcoRI GAATTC 1 cut(s) 37
EcoRII CCWGG 3 cut(s) 59, 416, 698
EcoT14I CCWWGG 1 cut(s) 435
EcoT22I ATGCAT 1 cut(s) 785
ErhI CCWWGG 1 cut(s) 435
Esp3I CGTCTC 1 cut(s) 170
FaeI CATG 6 cut(s) 439, 476, 500, 657, 695, 787
FaqI GGGAC 1 cut(s) 681
FatI CATG 6 cut(s) 435, 472, 496, 653, 691, 783
FauI CCCGC 1 cut(s) 675
Fnu4HI GCNGC 2 cut(s) 734, 744
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 2 cut(s) 734, 744
FspBI CTAG 2 cut(s) 219, 777
GluI GCNGC 2 cut(s) 734, 744
GsuI CTGGAG 1 cut(s) 546
HaeIII GGCC 3 cut(s) 122, 622, 703
HapII CCGG 3 cut(s) 90, 278, 488
HgaI GACGC 1 cut(s) 607
Hin1I GRCGYC 1 cut(s) 599
Hin1II CATG 6 cut(s) 439, 476, 500, 657, 695, 787
HindIII AAGCTT 1 cut(s) 884
HinfI GANTC 4 cut(s) 407, 413, 425, 761
HpaII CCGG 3 cut(s) 90, 278, 488
HphI GGTGA 2 cut(s) 6, 455
Hpy166II GTNNAC 1 cut(s) 141
Hpy188I TCNGA 5 cut(s) 84, 369, 412, 727, 879
Hpy188III TCNNGA 4 cut(s) 563, 573, 758, 777
Hpy8I GTNNAC 1 cut(s) 141
Hpy99I CGWCG 1 cut(s) 238
HpyAV CCTTC 3 cut(s) 46, 178, 783
HpyCH4V TGCA 5 cut(s) 469, 533, 746, 783, 816
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 427
HpyF3I CTNAG 3 cut(s) 102, 132, 876
Hsp92I GRCGYC 1 cut(s) 599
Hsp92II CATG 6 cut(s) 439, 476, 500, 657, 695, 787
Kzo9I GATC 2 cut(s) 145, 565
Lsp1109I GCAGC 1 cut(s) 730
LweI GCATC 3 cut(s) 219, 321, 770
MaeI CTAG 2 cut(s) 219, 777
MaeIII GTNAC 1 cut(s) 461
MalI GATC 2 cut(s) 147, 567
MboI GATC 2 cut(s) 145, 565
MboII GAAGA 6 cut(s) 46, 61, 193, 221, 410, 866
MhlI GDGCHC 1 cut(s) 97
MluCI AATT 7 cut(s) 37, 244, 283, 452, 510, 550, 766
MlyI GAGTC 4 cut(s) 416, 422, 434, 770
MmeI TCCRAC 1 cut(s) 390
MnlI CCTC 5 cut(s) 18, 147, 312, 725, 844
Mph1103I ATGCAT 1 cut(s) 785
MseI TTAA 6 cut(s) 252, 291, 309, 450, 549, 892
MspI CCGG 3 cut(s) 90, 278, 488
MspR9I CCNGG 4 cut(s) 61, 90, 418, 700
MvaI CCWGG 3 cut(s) 61, 418, 700
MwoI GCNNNNNNNGC 2 cut(s) 128, 427
NciI CCSGG 1 cut(s) 90
NcoI CCATGG 1 cut(s) 435
NdeII GATC 2 cut(s) 145, 565
NheI GCTAGC 1 cut(s) 218
NlaIII CATG 6 cut(s) 439, 476, 500, 657, 695, 787
NlaIV GGNNCC 4 cut(s) 58, 323, 697, 789
NmuCI GTSAC 1 cut(s) 461
NsiI ATGCAT 1 cut(s) 785
NspV TTCGAA 1 cut(s) 41
PaqCI CACCTGC 1 cut(s) 474
PflFI GACNNNGTC 1 cut(s) 693
PflMI CCANNNNNTGG 1 cut(s) 692
PkrI GCNGC 2 cut(s) 735, 745
PleI GAGTC 4 cut(s) 415, 421, 433, 769
PpsI GAGTC 4 cut(s) 415, 421, 433, 769
PpuMI RGGWCCY 1 cut(s) 321
Psp5II RGGWCCY 1 cut(s) 321
Psp6I CCWGG 3 cut(s) 59, 416, 698
PspGI CCWGG 3 cut(s) 59, 416, 698
PspN4I GGNNCC 4 cut(s) 58, 323, 697, 789
PspPI GGNCC 2 cut(s) 321, 695
PspPPI RGGWCCY 1 cut(s) 321
PstI CTGCAG 1 cut(s) 748
PsyI GACNNNGTC 1 cut(s) 693
RsaI GTAC 3 cut(s) 113, 142, 652
RsaNI GTAC 3 cut(s) 112, 141, 651
SaqAI TTAA 6 cut(s) 252, 291, 309, 450, 549, 892
SatI GCNGC 2 cut(s) 734, 744
Sau3AI GATC 2 cut(s) 145, 565
Sau96I GGNCC 2 cut(s) 321, 695
SchI GAGTC 4 cut(s) 416, 422, 434, 770
ScrFI CCNGG 4 cut(s) 61, 90, 418, 700
SduI GDGCHC 1 cut(s) 97
SetI ASST 6 cut(s) 12, 108, 468, 523, 741, 888
SfaNI GCATC 3 cut(s) 219, 321, 770
SfcI CTRYAG 2 cut(s) 168, 744
SfuI TTCGAA 1 cut(s) 41
SinI GGWCC 2 cut(s) 321, 695
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
Sse9I AATT 7 cut(s) 37, 244, 283, 452, 510, 550, 766
SsiI CCGC 2 cut(s) 668, 733
SspMI CTAG 2 cut(s) 219, 777
StyD4I CCNGG 4 cut(s) 59, 88, 416, 698
StyI CCWWGG 1 cut(s) 435
TaqI TCGA 2 cut(s) 41, 574
TasI AATT 7 cut(s) 37, 244, 283, 452, 510, 550, 766
TatI WGTACW 2 cut(s) 111, 140
TauI GCSGC 1 cut(s) 736
Tru1I TTAA 6 cut(s) 252, 291, 309, 450, 549, 892
Tru9I TTAA 6 cut(s) 252, 291, 309, 450, 549, 892
TscAI CASTG 2 cut(s) 616, 623
TseFI GTSAC 1 cut(s) 461
TseI GCWGC 1 cut(s) 743
Tsp45I GTSAC 1 cut(s) 461
TspDTI ATGAA 2 cut(s) 386, 485
TspRI CASTG 2 cut(s) 616, 623
Tth111I GACNNNGTC 1 cut(s) 693
Van91I CCANNNNNTGG 1 cut(s) 692
VpaK11BI GGWCC 2 cut(s) 321, 695
XapI RAATTY 4 cut(s) 37, 244, 283, 766
XbaI TCTAGA 1 cut(s) 776
XcmI CCANNNNNNNNNTGG 1 cut(s) 442
XspI CTAG 2 cut(s) 219, 777
Zsp2I ATGCAT 1 cut(s) 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.