Rw0G004280

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00162
OG0008807
Physical Location & Seq
Forward (+)
169588 .. 171929
2342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G004280.1

Sequence Viewer

Length: 1008 bp
ATGGGGAAGGTTTCGCCAAAAGAGAGGGGTTTGAAGAATTCGAAGCAGAAGAAGGGTTCCAGGGGCTCAGGGAACAAGTATCTGAAGCCGGGTGCTCTTGCCCAGCTAAAGTACAGCAAGGCCAGTTCTGCTAAGCCGTGTACTGATCTGGGGAGGAAGCGAGTGGCTGTAGTGGAGACGAAGAAGGATGATGTTGATTTGGGGATTGAAGATAGGGCTAGCCCTTTGATGCCGTCGCCTGTGAATTTGGTCAAGCAGAGTAGTTTGTTGAAAACGCCAAGGACTCCTTTGATGTTATCGCCGGTGAATTCGGTTAAGCAGACTAGTTTGCTTAAAACACCGAGGACCCCTTTGATGCTGTCTCCTGTGGATTTTGTTAGGCAGAATAGTCTGATGAAAACACCAATGACCCCCAGAATGGAAGATTGTGAGTCCGAGTCCAGGCTTGAGTCGCTTCCCATGGATTTACTGGTTAAATTATTGTGTCACCTGCACCATGACCAACTGAAGCCGGTGTTTCATGTTTCTCAAAGAATTAGGAAAGCTGTTATACTTGCAAGGCAGTATCACTTTAATTATACAACTCCAGATCGCTCTCGACAGGAGATGTTGAGAACAATGACACCCCACCCCACTGAACACTGGCCTTTCAAAAGGTTGATATTTCGAATGAACAGTTTTATTGCTCTCTACCCAACTATTTCGCTTTGCTCTTCATTACATTATGTTTTAAATGGTCTTTGCAGCAAGGGAGATGGCAAGGGTACATGGATACGAAGCCCGCATACTCCAAAAGCACCAAGACATGGTCCCAGGCCACCATCTCGCCTCAAAGTTTCAGAAATGCGGCAGGTTGCTGCAGTTCTCTTTCAGGAGTCAAATTTCCCTTCTAGATGCATGGTGCCATCTGCCTTACCAAAGCCCCTGTGCAAATCTTTGGCTTCCAATAGAGTTTTGTTCTATGAGGAAGAGTTATGTCAGGCTGTGGCTCAGAATAAGCTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

335

Amino Acids

37.8

Weight (kDa)

10.13

Isoelectric Point (pI)

47.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 498
Acc36I ACCTGC 2 cut(s) 498, 841
AccB1I GGYRCC 1 cut(s) 901
AccB7I CCANNNNNTGG 1 cut(s) 806
AciI CCGC 2 cut(s) 782, 847
AcsI RAATTY 4 cut(s) 37, 244, 307, 880
AcuI CTGAAG 2 cut(s) 104, 527
AfaI GTAC 3 cut(s) 113, 142, 766
AfiI CCNNNNNNNGG 3 cut(s) 418, 441, 806
AgsI TTSAA 4 cut(s) 34, 209, 271, 652
AhlI ACTAGT 1 cut(s) 323
AjnI CCWGG 3 cut(s) 59, 440, 812
AluBI AGCT 3 cut(s) 106, 545, 1000
AluI AGCT 3 cut(s) 106, 545, 1000
Alw21I GWGCWC 1 cut(s) 97
Alw26I GTCTC 2 cut(s) 170, 366
AoxI GGCC 3 cut(s) 120, 644, 815
ApeKI GCWGC 2 cut(s) 744, 857
ApoI RAATTY 4 cut(s) 37, 244, 307, 880
AspS9I GGNCC 2 cut(s) 345, 809
AsuC2I CCSGG 1 cut(s) 90
AsuHPI GGTGA 2 cut(s) 316, 479
AsuII TTCGAA 2 cut(s) 41, 667
AsuNHI GCTAGC 1 cut(s) 218
AvaII GGWCC 2 cut(s) 345, 809
BanI GGYRCC 1 cut(s) 901
BanII GRGCYC 1 cut(s) 68
BarI GAAGNNNNNNTAC 2 cut(s) 769, 801
Bbv12I GWGCWC 1 cut(s) 97
BbvI GCAGC 2 cut(s) 756, 844
BccI CCATC 3 cut(s) 749, 829, 913
BceAI ACGGC 2 cut(s) 121, 217
BciT130I CCWGG 3 cut(s) 61, 442, 814
BciVI GTATCC 1 cut(s) 765
BcnI CCSGG 1 cut(s) 90
BcoDI GTCTC 2 cut(s) 170, 366
BcuI ACTAGT 1 cut(s) 323
BfaI CTAG 3 cut(s) 219, 324, 891
BfmI CTRYAG 2 cut(s) 168, 858
BfuAI ACCTGC 2 cut(s) 498, 841
BfuI GTATCC 1 cut(s) 765
BisI GCNGC 3 cut(s) 745, 848, 858
BlpI GCTNAGC 1 cut(s) 132
BlsI GCNGC 3 cut(s) 746, 849, 859
Bme1390I CCNGG 4 cut(s) 61, 90, 442, 814
Bme18I GGWCC 2 cut(s) 345, 809
BmgT120I GGNCC 2 cut(s) 345, 809
BmiI GGNNCC 4 cut(s) 58, 347, 811, 903
BmrFI CCNGG 4 cut(s) 61, 90, 442, 814
BmsI GCATC 3 cut(s) 219, 345, 884
BmtI GCTAGC 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 570
Bpu10I CCTNAGC 1 cut(s) 67
Bpu1102I GCTNAGC 1 cut(s) 132
Bpu14I TTCGAA 2 cut(s) 41, 667
BpuEI CTTGAG 1 cut(s) 467
BpuMI CCSGG 1 cut(s) 90
BsaJI CCNNGG 5 cut(s) 60, 278, 341, 459, 812
Bsc4I CCNNNNNNNGG 3 cut(s) 418, 441, 806
Bse118I RCCGGY 2 cut(s) 301, 511
Bse1I ACTGG 3 cut(s) 123, 474, 647
BseBI CCWGG 3 cut(s) 61, 442, 814
BseDI CCNNGG 5 cut(s) 60, 278, 341, 459, 812
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 3 cut(s) 418, 441, 806
BseMII CTCAG 2 cut(s) 81, 1004
BseNI ACTGG 3 cut(s) 123, 474, 647
BseXI GCAGC 2 cut(s) 756, 844
BseYI CCCAGC 1 cut(s) 102
BsgI GTGCAG 1 cut(s) 476
BshFI GGCC 3 cut(s) 122, 646, 817
BshNI GGYRCC 1 cut(s) 901
BsiHKAI GWGCWC 1 cut(s) 97
BsiSI CCGG 3 cut(s) 89, 302, 512
BslFI GGGAC 1 cut(s) 795
BslI CCNNNNNNNGG 3 cut(s) 418, 441, 806
BsmAI GTCTC 2 cut(s) 170, 366
BsmBI CGTCTC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 795
BsnI GGCC 3 cut(s) 122, 646, 817
Bsp119I TTCGAA 2 cut(s) 41, 667
Bsp1286I GDGCHC 2 cut(s) 68, 97
Bsp143I GATC 2 cut(s) 145, 589
Bsp1720I GCTNAGC 1 cut(s) 132
Bsp19I CCATGG 1 cut(s) 459
BspACI CCGC 2 cut(s) 782, 847
BspANI GGCC 3 cut(s) 122, 646, 817
BspCNI CTCAG 2 cut(s) 80, 1003
BspLI GGNNCC 4 cut(s) 58, 347, 811, 903
BspMAI CTGCAG 1 cut(s) 862
BspMI ACCTGC 2 cut(s) 498, 841
BspOI GCTAGC 1 cut(s) 222
BspQI GCTCTTC 1 cut(s) 718
BspT104I TTCGAA 2 cut(s) 41, 667
BspT107I GGYRCC 1 cut(s) 901
BsrFI RCCGGY 2 cut(s) 301, 511
BsrI ACTGG 3 cut(s) 123, 474, 647
BssAI RCCGGY 2 cut(s) 301, 511
BssECI CCNNGG 5 cut(s) 60, 278, 341, 459, 812
BssMI GATC 2 cut(s) 145, 589
BssT1I CCWWGG 2 cut(s) 278, 459
Bst2UI CCWGG 3 cut(s) 61, 442, 814
Bst4CI ACNGT 1 cut(s) 677
Bst6I CTCTTC 2 cut(s) 718, 963
BstBI TTCGAA 2 cut(s) 41, 667
BstC8I GCNNGC 2 cut(s) 220, 782
BstDEI CTNAG 3 cut(s) 67, 132, 990
BstDSI CCRYGG 1 cut(s) 459
BstF5I GGATG 1 cut(s) 193
BstKTI GATC 2 cut(s) 148, 592
BstMAI GTCTC 2 cut(s) 170, 366
BstMBI GATC 2 cut(s) 145, 589
BstMWI GCNNNNNNNGC 2 cut(s) 128, 451
BstNI CCWGG 3 cut(s) 61, 442, 814
BstSCI CCNGG 4 cut(s) 59, 88, 440, 812
BstSFI CTRYAG 2 cut(s) 168, 858
BstV1I GCAGC 2 cut(s) 756, 844
BsuI GTATCC 1 cut(s) 765
BsuRI GGCC 3 cut(s) 122, 646, 817
BtgI CCRYGG 1 cut(s) 459
BtsCI GGATG 1 cut(s) 193
BtsIMutI CAGTG 2 cut(s) 633, 640
BveI ACCTGC 2 cut(s) 498, 841
Cac8I GCNNGC 2 cut(s) 220, 782
Cfr10I RCCGGY 2 cut(s) 301, 511
Cfr13I GGNCC 2 cut(s) 345, 809
Csp6I GTAC 3 cut(s) 112, 141, 765
CviAII CATG 6 cut(s) 460, 497, 521, 768, 806, 898
CviQI GTAC 3 cut(s) 112, 141, 765
DdeI CTNAG 3 cut(s) 67, 132, 990
DpnI GATC 2 cut(s) 147, 591
DpnII GATC 2 cut(s) 145, 589
DraI TTTAAA 1 cut(s) 732
Eam1104I CTCTTC 2 cut(s) 718, 963
EarI CTCTTC 2 cut(s) 718, 963
Eco130I CCWWGG 2 cut(s) 278, 459
Eco24I GRGCYC 1 cut(s) 68
Eco47I GGWCC 2 cut(s) 345, 809
Eco57I CTGAAG 2 cut(s) 104, 527
EcoO109I RGGNCCY 1 cut(s) 345
EcoRI GAATTC 2 cut(s) 37, 307
EcoRII CCWGG 3 cut(s) 59, 440, 812
EcoT14I CCWWGG 2 cut(s) 278, 459
EcoT22I ATGCAT 1 cut(s) 899
EcoT38I GRGCYC 1 cut(s) 68
ErhI CCWWGG 2 cut(s) 278, 459
Esp3I CGTCTC 1 cut(s) 170
FaeI CATG 6 cut(s) 463, 500, 524, 771, 809, 901
FalI AAGNNNNNCTT 2 cut(s) 271, 303
FaqI GGGAC 1 cut(s) 795
FatI CATG 6 cut(s) 459, 496, 520, 767, 805, 897
FauI CCCGC 1 cut(s) 789
Fnu4HI GCNGC 3 cut(s) 745, 848, 858
FokI GGATG 1 cut(s) 200
FriOI GRGCYC 1 cut(s) 68
Fsp4HI GCNGC 3 cut(s) 745, 848, 858
FspBI CTAG 3 cut(s) 219, 324, 891
GluI GCNGC 3 cut(s) 745, 848, 858
GsaI CCCAGC 1 cut(s) 106
GsuI CTGGAG 1 cut(s) 570
HaeIII GGCC 3 cut(s) 122, 646, 817
HapII CCGG 3 cut(s) 89, 302, 512
Hin1II CATG 6 cut(s) 463, 500, 524, 771, 809, 901
HindIII AAGCTT 1 cut(s) 998
HinfI GANTC 5 cut(s) 283, 431, 437, 449, 875
HpaII CCGG 3 cut(s) 89, 302, 512
HphI GGTGA 2 cut(s) 316, 479
Hpy166II GTNNAC 1 cut(s) 141
Hpy188I TCNGA 5 cut(s) 84, 393, 436, 841, 993
Hpy188III TCNNGA 4 cut(s) 587, 597, 872, 891
Hpy8I GTNNAC 1 cut(s) 141
Hpy99I CGWCG 1 cut(s) 238
HpyAV CCTTC 3 cut(s) 46, 178, 897
HpyCH4III ACNGT 1 cut(s) 677
HpyCH4V TGCA 6 cut(s) 493, 557, 744, 860, 897, 930
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 451
HpyF3I CTNAG 3 cut(s) 67, 132, 990
Hsp92II CATG 6 cut(s) 463, 500, 524, 771, 809, 901
Kzo9I GATC 2 cut(s) 145, 589
LguI GCTCTTC 1 cut(s) 718
Lsp1109I GCAGC 2 cut(s) 756, 844
LweI GCATC 3 cut(s) 219, 345, 884
MaeI CTAG 3 cut(s) 219, 324, 891
MaeIII GTNAC 1 cut(s) 485
MalI GATC 2 cut(s) 147, 591
MboI GATC 2 cut(s) 145, 589
MboII GAAGA 7 cut(s) 46, 61, 193, 221, 434, 705, 980
MhlI GDGCHC 2 cut(s) 68, 97
MluCI AATT 7 cut(s) 37, 244, 307, 476, 534, 574, 880
MlyI GAGTC 5 cut(s) 277, 440, 446, 458, 884
MnlI CCTC 5 cut(s) 18, 147, 336, 839, 958
Mph1103I ATGCAT 1 cut(s) 899
MseI TTAA 6 cut(s) 315, 333, 474, 573, 731, 1006
MspI CCGG 3 cut(s) 89, 302, 512
MspR9I CCNGG 4 cut(s) 61, 90, 442, 814
MvaI CCWGG 3 cut(s) 61, 442, 814
MwoI GCNNNNNNNGC 2 cut(s) 128, 451
NciI CCSGG 1 cut(s) 90
NcoI CCATGG 1 cut(s) 459
NdeII GATC 2 cut(s) 145, 589
NheI GCTAGC 1 cut(s) 218
NlaIII CATG 6 cut(s) 463, 500, 524, 771, 809, 901
NlaIV GGNNCC 4 cut(s) 58, 347, 811, 903
NmuCI GTSAC 1 cut(s) 485
NsiI ATGCAT 1 cut(s) 899
NspV TTCGAA 2 cut(s) 41, 667
PaqCI CACCTGC 1 cut(s) 498
PciSI GCTCTTC 1 cut(s) 718
PflFI GACNNNGTC 1 cut(s) 807
PflMI CCANNNNNTGG 1 cut(s) 806
PkrI GCNGC 3 cut(s) 746, 849, 859
PleI GAGTC 5 cut(s) 277, 439, 445, 457, 883
PpsI GAGTC 5 cut(s) 277, 439, 445, 457, 883
PpuMI RGGWCCY 1 cut(s) 345
Psp5II RGGWCCY 1 cut(s) 345
Psp6I CCWGG 3 cut(s) 59, 440, 812
PspFI CCCAGC 1 cut(s) 102
PspGI CCWGG 3 cut(s) 59, 440, 812
PspN4I GGNNCC 4 cut(s) 58, 347, 811, 903
PspPI GGNCC 2 cut(s) 345, 809
PspPPI RGGWCCY 1 cut(s) 345
PstI CTGCAG 1 cut(s) 862
PsyI GACNNNGTC 1 cut(s) 807
RsaI GTAC 3 cut(s) 113, 142, 766
RsaNI GTAC 3 cut(s) 112, 141, 765
SapI GCTCTTC 1 cut(s) 718
SaqAI TTAA 6 cut(s) 315, 333, 474, 573, 731, 1006
SatI GCNGC 3 cut(s) 745, 848, 858
Sau3AI GATC 2 cut(s) 145, 589
Sau96I GGNCC 2 cut(s) 345, 809
SchI GAGTC 5 cut(s) 277, 440, 446, 458, 884
ScrFI CCNGG 4 cut(s) 61, 90, 442, 814
SduI GDGCHC 2 cut(s) 68, 97
SetI ASST 7 cut(s) 12, 108, 492, 547, 659, 855, 1002
SfaNI GCATC 3 cut(s) 219, 345, 884
SfcI CTRYAG 2 cut(s) 168, 858
SfuI TTCGAA 2 cut(s) 41, 667
SgrAI CRCCGGYG 1 cut(s) 301
SinI GGWCC 2 cut(s) 345, 809
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
SpeI ACTAGT 1 cut(s) 323
Sse9I AATT 7 cut(s) 37, 244, 307, 476, 534, 574, 880
SsiI CCGC 2 cut(s) 782, 847
SspMI CTAG 3 cut(s) 219, 324, 891
StyD4I CCNGG 4 cut(s) 59, 88, 440, 812
StyI CCWWGG 2 cut(s) 278, 459
TaaI ACNGT 1 cut(s) 677
TaqI TCGA 3 cut(s) 41, 598, 667
TasI AATT 7 cut(s) 37, 244, 307, 476, 534, 574, 880
TatI WGTACW 2 cut(s) 111, 140
TauI GCSGC 1 cut(s) 850
Tru1I TTAA 6 cut(s) 315, 333, 474, 573, 731, 1006
Tru9I TTAA 6 cut(s) 315, 333, 474, 573, 731, 1006
TscAI CASTG 2 cut(s) 640, 647
TseFI GTSAC 1 cut(s) 485
TseI GCWGC 2 cut(s) 744, 857
Tsp45I GTSAC 1 cut(s) 485
TspDTI ATGAA 4 cut(s) 410, 509, 686, 705
TspRI CASTG 2 cut(s) 640, 647
Tth111I GACNNNGTC 1 cut(s) 807
Van91I CCANNNNNTGG 1 cut(s) 806
VpaK11BI GGWCC 2 cut(s) 345, 809
XapI RAATTY 4 cut(s) 37, 244, 307, 880
XbaI TCTAGA 1 cut(s) 890
XcmI CCANNNNNNNNNTGG 1 cut(s) 466
XspI CTAG 3 cut(s) 219, 324, 891
Zsp2I ATGCAT 1 cut(s) 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.