AT4G36250

Belongs to the aldehyde dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0006056
Physical Location & Seq
Forward (+)
17150740 .. 17153663
2924 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G36250.1

Sequence Viewer

Length: 1455 bp
ATGGAAGCTATGAAGGAGACTGTGGAGGAGAGCTTGAGAGAGATGAGAGAGACGTTTGCGAGTGGGAGGACGAGGAGTCTGAAGTGGAGGAAGGCACAGATCGGAGCTATATACGAGATGGTTAAAGACAACGAAGACAAGATCTGCAATGCTCTGTTTCAAGATTTGGGCAAACACAGTACTGAAGCTTTTAGAGATGAGCTTGGTGTTGTCTTGCGAACAGCTACTGTTGCAATCAACTGTCTTGATAAATGGGCCGTCCCCAAACATAGCAAACTTCCTCTGTTGTTCTACCCAGCAAAAGGGAAAGTCATATCGGAACCCTATGGGACGGTTCTTGTTCTGTCTAGCTGGAATTTTCCTATATCTTTGTCTCTGGATCCATTGATTGGGGCAATAGCAGCAGGAAATACCGTGCTTCTCAAGTCATCTGAACTAAGCCCTAACGCATCTGCCTTCCTTGCCAAGACAATTCCAGCTTATCTCGATACTAAAGCCATCAAAGTTATCGAAGGAGGACCTGATGTCGCTACTATCCTCTTGCAGCATCAATGGGACAAGATCTTCTTCACCGGGAGTCCCAAGATTGGAAGGATCATAATGGCTGCAGCAGCACAGCATCTGACTCCTGTGACATTGGAGCTTGGTGGAAAATGTCCCACCATTGTTGATCATCACACCATTTCAAAGAACATCAAGTCGGTTGTCAAGAGGATTGCTGGAGGAAAATGGGGATCTTGCAATGGACAAGCTTGTATCTCTGTAGATTACGTTCTTATCGAAAAGAGTTTCGCGCCTACTCTGATTGATATGTTGAAGCCTACGATAAAGTCTTTCTTTGGCGAAAATCCTAAAGAATCTGGATGTCTCTCAAGGATTGCAAACAAGCACCACGTTCAGAGACTGTCTCGTCTTCTTAGCGATCCTCGTGTCCAAGCTTCCATCGTCTATGGTGGTTCTATAGACGAAGATAAGCTGTATGTTGAGCCAACGATCTTGTTGGACCCTCCTCTTGATTCTGAGATCATGAATGAAGAGATCTTTGGTCCAATTCTCCCGATTATCACGGTACGTGACATCCAAGAAAGCATAGGGATCATTAATACAAAACCGAAGCCACTTGCCATTTATGCATTCACAAATGACGAGAACCTTAAAACTAGAATTTTGTCAGAAACATCCTCAGGAAGTGTTACCTTCAATGACGTCATGATCCAGTATATGTGTGATGCGTTACCTTTTGGAGGAGTGGGAGAAAGTGGAATAGGGAGGTATCACGGGAAATACTCATTTGATTGTTTCAGTCACGAGAAAGCAATAATGGAAGGAAGCTTAGGTATGGATCTTGAAGCTCGATACCCTCCATGGAACAACTTCAAGCTCACCTTCATCAGACTCGCATTTCGTGAAGCTTACTTCAAGCTTATCCTCCTTATGCTTGGTCTTAAAAGATAA

Protein Analysis

484

Amino Acids

53.61

Weight (kDa)

8.26

Isoelectric Point (pI)

31.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 3 - 439 8.3e-81 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 909
AatII GACGTC 1 cut(s) 1209
AccB7I CCANNNNNTGG 1 cut(s) 389
AccII CGCG 1 cut(s) 794
AclWI GGATC 8 cut(s) 374, 387, 602, 742, 917, 1103, 1207, 1350
AcsI RAATTY 2 cut(s) 355, 1164
AcuI CTGAAG 2 cut(s) 101, 204
AcyI GRCGYC 1 cut(s) 1206
AfaI GTAC 2 cut(s) 181, 1071
AfiI CCNNNNNNNGG 4 cut(s) 302, 389, 587, 1244
AgsI TTSAA 7 cut(s) 161, 687, 817, 1201, 1349, 1378, 1420
AhdI GACNNNNNGTC 2 cut(s) 75, 524
AjuI GAANNNNNNNTTGG 2 cut(s) 1026, 1058
Alw26I GTCTC 6 cut(s) 11, 44, 378, 872, 895, 912
AlwI GGATC 8 cut(s) 374, 387, 602, 742, 917, 1103, 1207, 1350
AlwNI CAGNNNCTG 3 cut(s) 227, 622, 904
AoxI GGCC 1 cut(s) 255
ApeKI GCWGC 5 cut(s) 401, 544, 605, 608, 611
ApoI RAATTY 2 cut(s) 355, 1164
ArsI GACNNNNNNTTYG 2 cut(s) 1386, 1418
AseI ATTAAT 1 cut(s) 1101
Asp700I GAANNNNTTC 1 cut(s) 1373
AspLEI GCGC 1 cut(s) 796
AspS9I GGNCC 4 cut(s) 255, 518, 1003, 1046
AsuC2I CCSGG 1 cut(s) 574
AsuHPI GGTGA 2 cut(s) 562, 1375
AvaII GGWCC 3 cut(s) 518, 1003, 1046
AxyI CCTNAGG 1 cut(s) 1183
BamHI GGATCC 1 cut(s) 379
BauI CACGAG 2 cut(s) 927, 1307
BbsI GAAGAC 2 cut(s) 141, 905
BbvI GCAGC 5 cut(s) 413, 556, 592, 620, 623
BccI CCATC 3 cut(s) 112, 506, 950
BceAI ACGGC 1 cut(s) 242
BclI TGATCA 1 cut(s) 670
BcnI CCSGG 1 cut(s) 574
BcoDI GTCTC 6 cut(s) 11, 44, 378, 872, 895, 912
BfaI CTAG 2 cut(s) 348, 1161
BfmI CTRYAG 3 cut(s) 606, 762, 960
BglII AGATCT 3 cut(s) 141, 561, 1038
BisI GCNGC 5 cut(s) 402, 545, 606, 609, 612
BlsI GCNGC 5 cut(s) 403, 546, 607, 610, 613
BmcAI AGTACT 1 cut(s) 181
Bme1390I CCNGG 1 cut(s) 574
Bme18I GGWCC 3 cut(s) 518, 1003, 1046
BmeRI GACNNNNNGTC 2 cut(s) 75, 524
BmgT120I GGNCC 4 cut(s) 255, 518, 1003, 1046
BmiI GGNNCC 3 cut(s) 321, 381, 1005
BmrFI CCNGG 1 cut(s) 574
BmsI GCATC 4 cut(s) 458, 556, 628, 1219
BpiI GAAGAC 2 cut(s) 141, 905
BplI GAGNNNNNCTC 2 cut(s) 892, 924
BpmI CTGGAG 1 cut(s) 741
Bpu10I CCTNAGC 1 cut(s) 1333
BpuEI CTTGAG 3 cut(s) 55, 407, 856
BpuMI CCSGG 1 cut(s) 574
BsaAI YACGTR 1 cut(s) 1073
BsaHI GRCGYC 1 cut(s) 1206
BsaJI CCNNGG 1 cut(s) 1364
Bsc4I CCNNNNNNNGG 4 cut(s) 302, 389, 587, 1244
Bse1I ACTGG 1 cut(s) 1216
Bse21I CCTNAGG 1 cut(s) 1183
Bse3DI GCAATG 2 cut(s) 154, 748
BseDI CCNNGG 1 cut(s) 1364
BseGI GGATG 3 cut(s) 869, 1077, 1178
BseLI CCNNNNNNNGG 4 cut(s) 302, 389, 587, 1244
BseMI GCAATG 2 cut(s) 154, 748
BseMII CTCAG 2 cut(s) 1011, 1197
BseNI ACTGG 1 cut(s) 1216
BseRI GAGGAG 4 cut(s) 41, 88, 999, 1260
BseXI GCAGC 5 cut(s) 413, 556, 592, 620, 623
BseYI CCCAGC 1 cut(s) 295
Bsh1236I CGCG 1 cut(s) 794
BshFI GGCC 1 cut(s) 257
BsiSI CCGG 1 cut(s) 573
BslFI GGGAC 5 cut(s) 245, 343, 564, 569, 642
BslI CCNNNNNNNGG 4 cut(s) 302, 389, 587, 1244
BsmAI GTCTC 6 cut(s) 11, 44, 378, 872, 895, 912
BsmBI CGTCTC 1 cut(s) 44
BsmFI GGGAC 5 cut(s) 245, 343, 564, 569, 642
BsmI GAATGC 1 cut(s) 1133
BsnI GGCC 1 cut(s) 257
Bsp19I CCATGG 1 cut(s) 1364
BspANI GGCC 1 cut(s) 257
BspCNI CTCAG 2 cut(s) 1012, 1196
BspFNI CGCG 1 cut(s) 794
BspHI TCATGA 2 cut(s) 1026, 1209
BspLI GGNNCC 3 cut(s) 321, 381, 1005
BspMAI CTGCAG 1 cut(s) 610
BspPI GGATC 8 cut(s) 374, 387, 602, 742, 917, 1103, 1207, 1350
BsrDI GCAATG 2 cut(s) 154, 748
BsrI ACTGG 1 cut(s) 1216
BssECI CCNNGG 1 cut(s) 1364
BssNI GRCGYC 1 cut(s) 1206
BssSI CACGAG 2 cut(s) 927, 1307
BssT1I CCWWGG 1 cut(s) 1364
Bst2BI CACGAG 2 cut(s) 927, 1307
Bst4CI ACNGT 8 cut(s) 22, 179, 229, 242, 334, 415, 906, 1069
Bst6I CTCTTC 1 cut(s) 1029
BstACI GRCGYC 1 cut(s) 1206
BstBAI YACGTR 1 cut(s) 1073
BstDEI CTNAG 5 cut(s) 437, 917, 1020, 1183, 1333
BstDSI CCRYGG 1 cut(s) 1364
BstENI CCTNNNNNAGG 1 cut(s) 1242
BstF5I GGATG 3 cut(s) 869, 1077, 1178
BstFNI CGCG 1 cut(s) 794
BstHHI GCGC 1 cut(s) 796
BstMAI GTCTC 6 cut(s) 11, 44, 378, 872, 895, 912
BstMWI GCNNNNNNNGC 5 cut(s) 230, 401, 461, 611, 1130
BstSCI CCNGG 1 cut(s) 572
BstSFI CTRYAG 3 cut(s) 606, 762, 960
BstUI CGCG 1 cut(s) 794
BstV1I GCAGC 5 cut(s) 413, 556, 592, 620, 623
BstV2I GAAGAC 2 cut(s) 141, 905
BstX2I RGATCY 6 cut(s) 141, 379, 561, 734, 1038, 1342
BstYI RGATCY 6 cut(s) 141, 379, 561, 734, 1038, 1342
Bsu36I CCTNAGG 1 cut(s) 1183
BsuRI GGCC 1 cut(s) 257
BtgI CCRYGG 1 cut(s) 1364
BtsCI GGATG 3 cut(s) 869, 1077, 1178
CaiI CAGNNNCTG 3 cut(s) 227, 622, 904
CciI TCATGA 2 cut(s) 1026, 1209
CfoI GCGC 1 cut(s) 796
Cfr13I GGNCC 4 cut(s) 255, 518, 1003, 1046
Csp6I GTAC 2 cut(s) 180, 1070
CspCI CAANNNNNGTGG 2 cut(s) 649, 684
CviAII CATG 3 cut(s) 1027, 1210, 1365
CviQI GTAC 2 cut(s) 180, 1070
DdeI CTNAG 5 cut(s) 437, 917, 1020, 1183, 1333
DrdI GACNNNNNNGTC 1 cut(s) 909
DriI GACNNNNNGTC 2 cut(s) 75, 524
DseDI GACNNNNNNGTC 1 cut(s) 909
Eam1104I CTCTTC 1 cut(s) 1029
Eam1105I GACNNNNNGTC 2 cut(s) 75, 524
EarI CTCTTC 1 cut(s) 1029
Eco130I CCWWGG 1 cut(s) 1364
Eco47I GGWCC 3 cut(s) 518, 1003, 1046
Eco57I CTGAAG 2 cut(s) 101, 204
Eco81I CCTNAGG 1 cut(s) 1183
EcoNI CCTNNNNNAGG 1 cut(s) 1242
EcoO109I RGGNCCY 1 cut(s) 518
EcoT14I CCWWGG 1 cut(s) 1364
EcoT22I ATGCAT 1 cut(s) 1135
ErhI CCWWGG 1 cut(s) 1364
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 3 cut(s) 1030, 1213, 1368
FalI AAGNNNNNCTT 6 cut(s) 551, 583, 821, 853, 1370, 1402
FaqI GGGAC 5 cut(s) 245, 343, 564, 569, 642
FatI CATG 3 cut(s) 1026, 1209, 1364
FbaI TGATCA 1 cut(s) 670
Fnu4HI GCNGC 5 cut(s) 402, 545, 606, 609, 612
FokI GGATG 3 cut(s) 876, 1064, 1165
Fsp4HI GCNGC 5 cut(s) 402, 545, 606, 609, 612
FspBI CTAG 2 cut(s) 348, 1161
GlaI GCGC 1 cut(s) 795
GluI GCNGC 5 cut(s) 402, 545, 606, 609, 612
GsaI CCCAGC 1 cut(s) 299
GsuI CTGGAG 1 cut(s) 741
HaeIII GGCC 1 cut(s) 257
HapII CCGG 1 cut(s) 573
HhaI GCGC 1 cut(s) 796
Hin1I GRCGYC 1 cut(s) 1206
Hin1II CATG 3 cut(s) 1030, 1213, 1368
Hin6I GCGC 1 cut(s) 794
HinP1I GCGC 1 cut(s) 794
HindIII AAGCTT 6 cut(s) 186, 750, 936, 1330, 1410, 1421
HinfI GANTC 6 cut(s) 76, 577, 625, 857, 1016, 1395
HpaII CCGG 1 cut(s) 573
HphI GGTGA 2 cut(s) 562, 1375
HpyAV CCTTC 8 cut(s) 7, 85, 466, 506, 585, 1207, 1319, 1396
HpyCH4III ACNGT 8 cut(s) 22, 179, 229, 242, 334, 415, 906, 1069
HpyCH4IV ACGT 5 cut(s) 53, 771, 894, 1072, 1206
HpyCH4V TGCA 7 cut(s) 147, 233, 544, 608, 741, 881, 1133
HpyF10VI GCNNNNNNNGC 5 cut(s) 230, 401, 461, 611, 1130
HpyF3I CTNAG 5 cut(s) 437, 917, 1020, 1183, 1333
HpySE526I ACGT 5 cut(s) 53, 771, 894, 1072, 1206
Hsp92I GRCGYC 1 cut(s) 1206
Hsp92II CATG 3 cut(s) 1030, 1213, 1368
HspAI GCGC 1 cut(s) 794
Ksp22I TGATCA 1 cut(s) 670
LmnI GCTCC 2 cut(s) 104, 640
Lsp1109I GCAGC 5 cut(s) 413, 556, 592, 620, 623
LweI GCATC 4 cut(s) 458, 556, 628, 1219
MaeI CTAG 2 cut(s) 348, 1161
MaeII ACGT 5 cut(s) 53, 771, 894, 1072, 1206
MaeIII GTNAC 5 cut(s) 631, 1073, 1192, 1233, 1304
MboII GAAGA 6 cut(s) 146, 556, 559, 905, 980, 1046
MflI RGATCY 6 cut(s) 141, 379, 561, 734, 1038, 1342
MluCI AATT 4 cut(s) 355, 471, 1050, 1164
MlyI GAGTC 4 cut(s) 85, 586, 619, 1389
MmeI TCCRAC 1 cut(s) 981
Mph1103I ATGCAT 1 cut(s) 1135
MroXI GAANNNNTTC 1 cut(s) 1373
MseI TTAA 4 cut(s) 123, 1101, 1155, 1446
MspI CCGG 1 cut(s) 573
MspR9I CCNGG 1 cut(s) 574
Mva1269I GAATGC 1 cut(s) 1133
MvnI CGCG 1 cut(s) 794
MwoI GCNNNNNNNGC 5 cut(s) 230, 401, 461, 611, 1130
NciI CCSGG 1 cut(s) 574
NcoI CCATGG 1 cut(s) 1364
NlaIII CATG 3 cut(s) 1030, 1213, 1368
NlaIV GGNNCC 3 cut(s) 321, 381, 1005
NmuCI GTSAC 3 cut(s) 631, 1073, 1304
NsiI ATGCAT 1 cut(s) 1135
PagI TCATGA 2 cut(s) 1026, 1209
PcsI WCGNNNNNNNCGW 1 cut(s) 777
PctI GAATGC 1 cut(s) 1133
PdmI GAANNNNTTC 1 cut(s) 1373
PfeI GAWTC 2 cut(s) 857, 1016
PflMI CCANNNNNTGG 1 cut(s) 389
PkrI GCNGC 5 cut(s) 403, 546, 607, 610, 613
PleI GAGTC 4 cut(s) 84, 585, 619, 1389
PpsI GAGTC 4 cut(s) 84, 585, 619, 1389
Ppu21I YACGTR 1 cut(s) 1073
PpuMI RGGWCCY 1 cut(s) 518
PshBI ATTAAT 1 cut(s) 1101
Psp5II RGGWCCY 1 cut(s) 518
PspFI CCCAGC 1 cut(s) 295
PspN4I GGNNCC 3 cut(s) 321, 381, 1005
PspPI GGNCC 4 cut(s) 255, 518, 1003, 1046
PspPPI RGGWCCY 1 cut(s) 518
PsrI GAACNNNNNNTAC 2 cut(s) 756, 788
PstI CTGCAG 1 cut(s) 610
PstNI CAGNNNCTG 3 cut(s) 227, 622, 904
PsuI RGATCY 6 cut(s) 141, 379, 561, 734, 1038, 1342
RsaI GTAC 2 cut(s) 181, 1071
RsaNI GTAC 2 cut(s) 180, 1070
SaqAI TTAA 4 cut(s) 123, 1101, 1155, 1446
SatI GCNGC 5 cut(s) 402, 545, 606, 609, 612
Sau96I GGNCC 4 cut(s) 255, 518, 1003, 1046
ScaI AGTACT 1 cut(s) 181
SchI GAGTC 4 cut(s) 85, 586, 619, 1389
ScrFI CCNGG 1 cut(s) 574
SfaNI GCATC 4 cut(s) 458, 556, 628, 1219
SfcI CTRYAG 3 cut(s) 606, 762, 960
SinI GGWCC 3 cut(s) 518, 1003, 1046
SmlI CTYRAG 3 cut(s) 34, 422, 871
SmoI CTYRAG 3 cut(s) 34, 422, 871
Sse9I AATT 4 cut(s) 355, 471, 1050, 1164
SspMI CTAG 2 cut(s) 348, 1161
StyD4I CCNGG 1 cut(s) 572
StyI CCWWGG 1 cut(s) 1364
TaaI ACNGT 8 cut(s) 22, 179, 229, 242, 334, 415, 906, 1069
TaiI ACGT 5 cut(s) 56, 774, 897, 1075, 1209
TaqI TCGA 4 cut(s) 486, 510, 780, 1354
TasI AATT 4 cut(s) 355, 471, 1050, 1164
TatI WGTACW 1 cut(s) 179
TfiI GAWTC 2 cut(s) 857, 1016
Tru1I TTAA 4 cut(s) 123, 1101, 1155, 1446
Tru9I TTAA 4 cut(s) 123, 1101, 1155, 1446
TseFI GTSAC 3 cut(s) 631, 1073, 1304
TseI GCWGC 5 cut(s) 401, 544, 605, 608, 611
Tsp45I GTSAC 3 cut(s) 631, 1073, 1304
TspDTI ATGAA 4 cut(s) 26, 1043, 1047, 1378
Van91I CCANNNNNTGG 1 cut(s) 389
VpaK11BI GGWCC 3 cut(s) 518, 1003, 1046
VspI ATTAAT 1 cut(s) 1101
XagI CCTNNNNNAGG 1 cut(s) 1242
XapI RAATTY 2 cut(s) 355, 1164
XmnI GAANNNNTTC 1 cut(s) 1373
XspI CTAG 2 cut(s) 348, 1161
ZraI GACGTC 1 cut(s) 1207
ZrmI AGTACT 1 cut(s) 181
Zsp2I ATGCAT 1 cut(s) 1135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.