Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006056

Physical Location & Seq

Genomic Coordinates Forward (+)

11774128 .. 11779361

Gene Structure 5234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG138000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGATTCTTGGTATATATGTTTCATTACAGATTGGAGTTGTGGTGAAAACAATCAATTATACTTTGAGCAATTTAGACAAATGGGTGGCACCTACAAAGGGTAAATTACCGTTGCTTTTTTTTCCGACAAGGGGAGAGGTGCTGCCGGAACCACTCGGCGTAGTTCTCATCTTTGCATCTTGGAACTTCCCAATATCTTTGGCTTTGGATCCTGTAATAGGAGCAATAGCTGCAGGGAATGCAGTGGTTCTAAAACCTTCAGACCAAGCACCGGCATGCTCTTCTTTAATTGCTAAAACCATACCTCAATACATGGACCCTAAAGCCGTAAGAATCATCGAGGGTGGACCACAAATTTGTGAAAAACTCCTGCAGCATAAGTGGGATAAGATATTCTTTACTGGAAGTCCACAGGTAGGGCGCGTTGTCATGACTGCAGCTGCCAAGCATTTAACACCTGTTACACTAGAGCTGGGTGGAAAATGCCCTGTCATCCTTGATTCACTCTCCAATCCTTCGGATTTAAAGGTGGCGATCAAAAGAATTGTAAGTGGAAAGTGGGGACCTTGCAGTGGGCAGGCATGTATAGGAATAGATTATATGCTCGTTGAGGAAAAGCTTGCTCCTACTGTGATCGAATTGTTAAAGAAAACGATGAAGAGATTTTATACTGAAAGCCCAAAAGATGCAAATTGCATGGCCAGAATTGTAAATAAGCACCACTTTCAGAGAGTGCAGAATCTCCTCAAAGACCCTCTTGTTGAAGCTTCCATTGTACATGGTGGTTCACTGGATGAAGAAAACCTGTTCATTGAGCCAATAATCTTGTTAGATCCACCACTTGATGCTGCAATCATGAATGAAGAAATCTTTGGCCCACTACTTCCAGTAATCACTTTGAAGAACATTCAAGAAAGCATTGAATTCATAAATGAAAGGCCAAAACCTCTAACCATTTACGCCTTCACCAAAGATGAAAACTTTAAGAAGAAAATTTTGTCAGAAACATCCTCAGGGAGCGTGACTTTCAATGACGTCTTGATTCAATTTCTCTGTGATGCTCTACCCTTTGGTGGTGTTGGTTCCAGTGGATTTGGGAGGTACCATGGGAAGTTTTCTTTTGATACTTTCAGCCATGAGAAAGCAGTTCTGCGAGCAGGCTTCTTCCCTGAACTTGAGGCTAGATATCCTCCTTGGAATGACTTCAAAATGACATTTATCAAACTTGCCTATGACCTTGACTACTTTGGACTATTTCTGCTCCTTGTTGGACTTAAAAGGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

428

Amino Acids

47.41

Weight (kDa)

8.03

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	46 - 383	4e-76	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36250
fragaria_vesca	FvH4_1g12280 FvH4_1g12280
malus_domestica	MD02G1136600.v1.1 MD15G1250400.v1.1
prunus_persica	Prupe.7G163900_v2.0.a1 Prupe.7G163900_v2.0.a1 Prupe.7G163900_v2.0.a1 Prupe.7G163900_v2.0.a1 Prupe.7G163900_v2.0.a1 Prupe.7G163900_v2.0.a1
pyrus_communis	pycom02g10790
rosa_chinensis	RchiOBHm_Chr2g0100081 RchiOBHm_Chr2g0100111
rosa_laevigata	RLG00000016934
rosa_multiflora	Rmu_sc0000164.1_g000004 Rmu_sc0000164.1_g000009
rosa_roxburghii	Rroxscaffold_2G00142570
rosa_rugosa	Rorug02G0085500
rosa_samantha	Rh2AG134300 Rh2BG138000 Rh2CG139300 Rh2CG139600 Rh2DG139600 Rh2DG139900
rosa_wichuraiana	Rw2G010470 Rw2G010490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1038
Acc65I	GGTACC	1 cut(s)	1101
AccB1I	GGYRCC	2 cut(s)	88, 1101
AccII	CGCG	1 cut(s)	423
AclWI	GGATC	3 cut(s)	203, 216, 827
AcoI	YGGCCR	1 cut(s)	699
AcsI	RAATTY	3 cut(s)	354, 923, 993
AcuI	CTGAAG	1 cut(s)	243
AcyI	GRCGYC	1 cut(s)	1035
AfaI	GTAC	2 cut(s)	777, 1103
AfiI	CCNNNNNNNGG	7 cut(s)	98, 131, 218, 271, 416, 572, 1073
AgsI	TTSAA	7 cut(s)	764, 901, 911, 923, 1030, 1046, 1207
AjuI	GAANNNNNNNTTGG	2 cut(s)	855, 887
AluBI	AGCT	5 cut(s)	230, 440, 472, 619, 767
AluI	AGCT	5 cut(s)	230, 440, 472, 619, 767
AlwI	GGATC	3 cut(s)	203, 216, 827
AoxI	GGCC	3 cut(s)	699, 874, 938
ApeKI	GCWGC	6 cut(s)	142, 230, 373, 437, 440, 848
ApoI	RAATTY	3 cut(s)	354, 923, 993
ArsI	GACNNNNNNTTYG	2 cut(s)	339, 371
Asp700I	GAANNNNTTC	1 cut(s)	1202
Asp718I	GGTACC	1 cut(s)	1101
AspLEI	GCGC	1 cut(s)	423
AspS9I	GGNCC	4 cut(s)	316, 347, 563, 875
AsuHPI	GGTGA	2 cut(s)	55, 958
AvaII	GGWCC	3 cut(s)	316, 347, 563
AxyI	CCTNAGG	1 cut(s)	1012
BalI	TGGCCA	1 cut(s)	701
BamHI	GGATCC	1 cut(s)	208
BanI	GGYRCC	2 cut(s)	88, 1101
BbvI	GCAGC	6 cut(s)	129, 217, 385, 427, 449, 835
BceAI	ACGGC	1 cut(s)	311
BfaI	CTAG	2 cut(s)	467, 1182
BfmI	CTRYAG	3 cut(s)	231, 371, 435
BisI	GCNGC	6 cut(s)	143, 231, 374, 438, 441, 849
BlsI	GCNGC	6 cut(s)	144, 232, 375, 439, 442, 850
Bme18I	GGWCC	3 cut(s)	316, 347, 563
BmgT120I	GGNCC	4 cut(s)	316, 347, 563, 875
BmiI	GGNNCC	7 cut(s)	90, 150, 210, 318, 564, 1084, 1103
BmsI	GCATC	4 cut(s)	185, 676, 835, 1048
BpuEI	CTTGAG	1 cut(s)	1196
BsaHI	GRCGYC	1 cut(s)	1035
BsaJI	CCNNGG	2 cut(s)	1105, 1193
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	7 cut(s)	98, 131, 218, 271, 416, 572, 1073
Bse118I	RCCGGY	1 cut(s)	271
Bse1I	ACTGG	4 cut(s)	406, 795, 887, 1086
Bse21I	CCTNAGG	1 cut(s)	1012
BseDI	CCNNGG	2 cut(s)	1105, 1193
BseGI	GGATG	3 cut(s)	492, 799, 1007
BseLI	CCNNNNNNNGG	7 cut(s)	98, 131, 218, 271, 416, 572, 1073
BseMII	CTCAG	1 cut(s)	1026
BseNI	ACTGG	4 cut(s)	406, 795, 887, 1086
BseRI	GAGGAG	1 cut(s)	734
BseXI	GCAGC	6 cut(s)	129, 217, 385, 427, 449, 835
BseYI	CCCAGC	1 cut(s)	472
BsgI	GTGCAG	1 cut(s)	755
Bsh1236I	CGCG	1 cut(s)	423
BshFI	GGCC	3 cut(s)	701, 876, 940
BshNI	GGYRCC	2 cut(s)	88, 1101
BsiSI	CCGG	2 cut(s)	146, 272
BslFI	GGGAC	1 cut(s)	576
BslI	CCNNNNNNNGG	7 cut(s)	98, 131, 218, 271, 416, 572, 1073
BsmFI	GGGAC	1 cut(s)	576
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	3 cut(s)	701, 876, 940
Bsp1407I	TGTACA	1 cut(s)	775
Bsp143I	GATC	4 cut(s)	208, 534, 633, 832
Bsp19I	CCATGG	1 cut(s)	1105
BspANI	GGCC	3 cut(s)	701, 876, 940
BspCNI	CTCAG	1 cut(s)	1025
BspFNI	CGCG	1 cut(s)	423
BspHI	TCATGA	2 cut(s)	429, 855
BspLI	GGNNCC	7 cut(s)	90, 150, 210, 318, 564, 1084, 1103
BspMAI	CTGCAG	3 cut(s)	235, 375, 439
BspPI	GGATC	3 cut(s)	203, 216, 827
BspQI	GCTCTTC	1 cut(s)	286
BspT107I	GGYRCC	2 cut(s)	88, 1101
BsrFI	RCCGGY	1 cut(s)	271
BsrGI	TGTACA	1 cut(s)	775
BsrI	ACTGG	4 cut(s)	406, 795, 887, 1086
BssAI	RCCGGY	1 cut(s)	271
BssECI	CCNNGG	2 cut(s)	1105, 1193
BssMI	GATC	4 cut(s)	208, 534, 633, 832
BssNI	GRCGYC	1 cut(s)	1035
BssT1I	CCWWGG	2 cut(s)	1105, 1193
Bst4CI	ACNGT	2 cut(s)	111, 631
Bst6I	CTCTTC	2 cut(s)	286, 653
BstACI	GRCGYC	1 cut(s)	1035
BstAPI	GCANNNNNTGC	2 cut(s)	230, 239
BstAUI	TGTACA	1 cut(s)	775
BstC8I	GCNNGC	5 cut(s)	277, 579, 621, 1155, 1159
BstDEI	CTNAG	1 cut(s)	1012
BstDSI	CCRYGG	1 cut(s)	1105
BstENI	CCTNNNNNAGG	1 cut(s)	216
BstF5I	GGATG	3 cut(s)	492, 799, 1007
BstFNI	CGCG	1 cut(s)	423
BstHHI	GCGC	1 cut(s)	423
BstKTI	GATC	4 cut(s)	211, 537, 636, 835
BstMBI	GATC	4 cut(s)	208, 534, 633, 832
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 239
BstNSI	RCATGY	2 cut(s)	279, 585
BstSFI	CTRYAG	3 cut(s)	231, 371, 435
BstUI	CGCG	1 cut(s)	423
BstV1I	GCAGC	6 cut(s)	129, 217, 385, 427, 449, 835
BstX2I	RGATCY	2 cut(s)	208, 832
BstYI	RGATCY	2 cut(s)	208, 832
Bsu36I	CCTNAGG	1 cut(s)	1012
BsuRI	GGCC	3 cut(s)	701, 876, 940
BtgI	CCRYGG	1 cut(s)	1105
BtsCI	GGATG	3 cut(s)	492, 799, 1007
BtsI	GCAGTG	2 cut(s)	249, 577
BtsIMutI	CAGTG	4 cut(s)	249, 577, 788, 1093
Cac8I	GCNNGC	5 cut(s)	277, 579, 621, 1155, 1159
CciI	TCATGA	2 cut(s)	429, 855
CfoI	GCGC	1 cut(s)	423
Cfr10I	RCCGGY	1 cut(s)	271
Cfr13I	GGNCC	4 cut(s)	316, 347, 563, 875
Csp6I	GTAC	2 cut(s)	776, 1102
CviAII	CATG	9 cut(s)	276, 313, 430, 582, 697, 779, 856, 1106, 1136
CviQI	GTAC	2 cut(s)	776, 1102
DdeI	CTNAG	1 cut(s)	1012
DpnI	GATC	4 cut(s)	210, 536, 635, 834
DpnII	GATC	4 cut(s)	208, 534, 633, 832
DraI	TTTAAA	1 cut(s)	525
EaeI	YGGCCR	1 cut(s)	699
Eam1104I	CTCTTC	2 cut(s)	286, 653
EarI	CTCTTC	2 cut(s)	286, 653
Eco130I	CCWWGG	2 cut(s)	1105, 1193
Eco32I	GATATC	1 cut(s)	1187
Eco47I	GGWCC	3 cut(s)	316, 347, 563
Eco57I	CTGAAG	1 cut(s)	243
Eco81I	CCTNAGG	1 cut(s)	1012
EcoNI	CCTNNNNNAGG	1 cut(s)	216
EcoO109I	RGGNCCY	1 cut(s)	563
EcoRI	GAATTC	1 cut(s)	923
EcoRV	GATATC	1 cut(s)	1187
EcoT14I	CCWWGG	2 cut(s)	1105, 1193
ErhI	CCWWGG	2 cut(s)	1105, 1193
FaeI	CATG	9 cut(s)	279, 316, 433, 585, 700, 782, 859, 1109, 1139
FalI	AAGNNNNNCTT	6 cut(s)	380, 412, 707, 739, 741, 773
FaqI	GGGAC	1 cut(s)	576
FatI	CATG	9 cut(s)	275, 312, 429, 581, 696, 778, 855, 1105, 1135
Fnu4HI	GCNGC	6 cut(s)	143, 231, 374, 438, 441, 849
FokI	GGATG	3 cut(s)	479, 806, 994
Fsp4HI	GCNGC	6 cut(s)	143, 231, 374, 438, 441, 849
FspBI	CTAG	2 cut(s)	467, 1182
GlaI	GCGC	1 cut(s)	422
GluI	GCNGC	6 cut(s)	143, 231, 374, 438, 441, 849
GsaI	CCCAGC	1 cut(s)	476
HaeIII	GGCC	3 cut(s)	701, 876, 940
HapII	CCGG	2 cut(s)	146, 272
HhaI	GCGC	1 cut(s)	423
Hin1I	GRCGYC	1 cut(s)	1035
Hin1II	CATG	9 cut(s)	279, 316, 433, 585, 700, 782, 859, 1109, 1139
Hin6I	GCGC	1 cut(s)	421
HinP1I	GCGC	1 cut(s)	421
HindIII	AAGCTT	2 cut(s)	617, 765
HinfI	GANTC	5 cut(s)	4, 333, 500, 739, 1042
HpaII	CCGG	2 cut(s)	146, 272
HphI	GGTGA	2 cut(s)	55, 958
Hpy166II	GTNNAC	3 cut(s)	347, 410, 788
Hpy188I	TCNGA	5 cut(s)	126, 262, 520, 729, 1003
Hpy188III	TCNNGA	4 cut(s)	430, 856, 911, 1039
Hpy8I	GTNNAC	3 cut(s)	347, 410, 788
HpyAV	CCTTC	3 cut(s)	267, 525, 973
HpyCH4III	ACNGT	2 cut(s)	111, 631
HpyCH4IV	ACGT	1 cut(s)	1035
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 239
HpyF3I	CTNAG	1 cut(s)	1012
HpySE526I	ACGT	1 cut(s)	1035
Hsp92I	GRCGYC	1 cut(s)	1035
Hsp92II	CATG	9 cut(s)	279, 316, 433, 585, 700, 782, 859, 1109, 1139
HspAI	GCGC	1 cut(s)	421
KpnI	GGTACC	1 cut(s)	1105
Kzo9I	GATC	4 cut(s)	208, 534, 633, 832
LguI	GCTCTTC	1 cut(s)	286
LmnI	GCTCC	4 cut(s)	221, 628, 1017, 1266
Lsp1109I	GCAGC	6 cut(s)	129, 217, 385, 427, 449, 835
LweI	GCATC	4 cut(s)	185, 676, 835, 1048
MaeI	CTAG	2 cut(s)	467, 1182
MaeII	ACGT	1 cut(s)	1035
MaeIII	GTNAC	2 cut(s)	460, 1021
MalI	GATC	4 cut(s)	210, 536, 635, 834
MboI	GATC	4 cut(s)	208, 534, 633, 832
MboII	GAAGA	7 cut(s)	273, 670, 809, 875, 913, 1000, 1156
MflI	RGATCY	2 cut(s)	208, 832
MlsI	TGGCCA	1 cut(s)	701
MluNI	TGGCCA	1 cut(s)	701
MmeI	TCCRAC	2 cut(s)	149, 1249
Mox20I	TGGCCA	1 cut(s)	701
MroXI	GAANNNNTTC	1 cut(s)	1202
MscI	TGGCCA	1 cut(s)	701
MseI	TTAA	6 cut(s)	287, 452, 524, 644, 984, 1275
MslI	CAYNNNNRTG	1 cut(s)	274
Msp20I	TGGCCA	1 cut(s)	701
MspA1I	CMGCKG	1 cut(s)	440
MspI	CCGG	2 cut(s)	146, 272
Mva1269I	GAATGC	1 cut(s)	244
MvnI	CGCG	1 cut(s)	423
MwoI	GCNNNNNNNGC	2 cut(s)	230, 239
NcoI	CCATGG	1 cut(s)	1105
NdeII	GATC	4 cut(s)	208, 534, 633, 832
NlaIII	CATG	9 cut(s)	279, 316, 433, 585, 700, 782, 859, 1109, 1139
NlaIV	GGNNCC	7 cut(s)	90, 150, 210, 318, 564, 1084, 1103
NmeAIII	GCCGAG	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	1021
NspI	RCATGY	2 cut(s)	279, 585
PaeI	GCATGC	1 cut(s)	279
PagI	TCATGA	2 cut(s)	429, 855
PciSI	GCTCTTC	1 cut(s)	286
PctI	GAATGC	1 cut(s)	244
PdmI	GAANNNNTTC	1 cut(s)	1202
PfeI	GAWTC	5 cut(s)	4, 333, 500, 739, 1042
PkrI	GCNGC	6 cut(s)	144, 232, 375, 439, 442, 850
PpuMI	RGGWCCY	1 cut(s)	563
Psp5II	RGGWCCY	1 cut(s)	563
PspFI	CCCAGC	1 cut(s)	472
PspN4I	GGNNCC	7 cut(s)	90, 150, 210, 318, 564, 1084, 1103
PspPI	GGNCC	4 cut(s)	316, 347, 563, 875
PspPPI	RGGWCCY	1 cut(s)	563
PstI	CTGCAG	3 cut(s)	235, 375, 439
PsuI	RGATCY	2 cut(s)	208, 832
PvuII	CAGCTG	1 cut(s)	440
RsaI	GTAC	2 cut(s)	777, 1103
RsaNI	GTAC	2 cut(s)	776, 1102
RseI	CAYNNNNRTG	1 cut(s)	274
SapI	GCTCTTC	1 cut(s)	286
SaqAI	TTAA	6 cut(s)	287, 452, 524, 644, 984, 1275
SatI	GCNGC	6 cut(s)	143, 231, 374, 438, 441, 849
Sau3AI	GATC	4 cut(s)	208, 534, 633, 832
Sau96I	GGNCC	4 cut(s)	316, 347, 563, 875
SfaNI	GCATC	4 cut(s)	185, 676, 835, 1048
SfcI	CTRYAG	3 cut(s)	231, 371, 435
SinI	GGWCC	3 cut(s)	316, 347, 563
SmiMI	CAYNNNNRTG	1 cut(s)	274
SmlI	CTYRAG	1 cut(s)	1175
SmoI	CTYRAG	1 cut(s)	1175
SphI	GCATGC	1 cut(s)	279
SspMI	CTAG	2 cut(s)	467, 1182
StyI	CCWWGG	2 cut(s)	1105, 1193
TaaI	ACNGT	2 cut(s)	111, 631
TaiI	ACGT	1 cut(s)	1038
TaqI	TCGA	2 cut(s)	339, 636
TatI	WGTACW	1 cut(s)	775
TfiI	GAWTC	5 cut(s)	4, 333, 500, 739, 1042
Tru1I	TTAA	6 cut(s)	287, 452, 524, 644, 984, 1275
Tru9I	TTAA	6 cut(s)	287, 452, 524, 644, 984, 1275
TscAI	CASTG	4 cut(s)	249, 577, 795, 1093
TseFI	GTSAC	1 cut(s)	1021
TseI	GCWGC	6 cut(s)	142, 230, 373, 437, 440, 848
Tsp45I	GTSAC	1 cut(s)	1021
TspDTI	ATGAA	9 cut(s)	12, 671, 799, 810, 872, 876, 916, 948, 990
TspRI	CASTG	4 cut(s)	249, 577, 795, 1093
VpaK11BI	GGWCC	3 cut(s)	316, 347, 563
XagI	CCTNNNNNAGG	1 cut(s)	216
XapI	RAATTY	3 cut(s)	354, 923, 993
XceI	RCATGY	2 cut(s)	279, 585
XmnI	GAANNNNTTC	1 cut(s)	1202
XspI	CTAG	2 cut(s)	467, 1182
ZraI	GACGTC	1 cut(s)	1036

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.