Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006056

Physical Location & Seq

Genomic Coordinates Reverse (-)

80645441 .. 80648654

Gene Structure 3214 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00142570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGACAGAAATAGTAGAAGAAACACTGTGTGAGCTGAGGCAAACCTTCAAGAGTGGTAAAACCAAAAGTGTTGCATGGAGGAAAGCCCAACTCAATGCTCTTCGTCAGCTCGTCAAAGATAATGAGGAAAAGGTCTTTGAAGCACTCTATCAAGATCTTGGCAAGCACCCGATTGAATCTTACAGGGATGAGATTGGAGTTGTGGTGAAAACGATCAATCATACTTTGAGCAATTTAGACAAATGGGTGGTACCTACAAAGGGTAAATTACCATTGGTTTTTTTTCCGAGAAGGGCAGAGGTGCTGCCGGAACCACTCGGCGTAGTTCTCATCTTTGCATCTTGGAACTTCCCAATATCTTTGGCTTTGGATCCTATAATAGGAGCAATAGCTGCAGGGAATGCAGTGGTTCTAAAGCCTTCAGACCAAGCACCGGCATGCTCTTCTTTAATTGCTACAACCATACCTCAATACATGGACCCTAAAGCCGTAAGAATCATCGAGGGTGGACCACAAATTTGTGAAAAACTCCTGCAGCATAAGTGGGATAAGATATTCTTTACTGGAAGTCCGCAGGTAGGGCGCGTTGTCATGACTGCAGCTGCCAAGCATTTAACACCTGTTACACTAGAGTTGGGTGGAAAATGCCCTGTCATCCTTGATTCACTCTCCAATCCTTCGGATTTAAAGGTGGCAATCAAAAGAATTGTAAGTGGAAAGTGGGGGCCTTGCAGTGGGCAGGCATGTATAGGAATAGATTATATGCTCGTTGAGGAAAAGCTTGCTCCTACTGTGATCGAATTGTTAAAGAAAACGATGAAGACATTTTATACTGAAAGCCCAAAAGATGCAAATTGCATAGCCAGAATTGTAAATAAGCACCACTTTCATAGAGTGCAGAATCTCCTCAAAGACCCTCTTGTTGAAGCTTCCATTGTACATGGTGGTTCACTGGATGAAGAAAACCTGTTCATTGAGCCAATAATCTTGTTAGATCCACCACTTGATGCTGCAATCATGAATGAAGAAATCTTTGGCCCACTACTTCCATTGAAGAACATTCAAGAAAGCATTGTATTCATAAATGAAAGGCCAAATCCTCTAACCATTTACGCCTTCACCAAAGATGAAAACTTTAAGAAGAAAATTTTATCAGAAACATCCTCAGGGAGTGTGACTTTCAATGACGTCTTGGTTCAATTTCTCTGTGATGATCTACCCTTTGGTGGTGTTGGTTCCAGTGGATTTGGGAGGTACCATGGGAAGTTTTCTTTCGATACTTTCAGCCATGAGAAAGCAGTTCTGCGATCAGGCTTCTTCCCTGAACTTGAGCCTAGATATCCTCCTTGGAATAACTTCAAAATGACATTTATCAAACTTGCCTATGACCTTGACTACTTTGGACTATTTCTGCTCCTTGTTGGACTTAAAAGGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

479

Amino Acids

53.51

Weight (kDa)

7.13

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	5 - 434	1.3e-76	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36250
fragaria_vesca	FvH4_1g12280 FvH4_1g12280
malus_domestica	MD02G1136600.v1.1 MD15G1250400.v1.1
prunus_persica	Prupe.7G163900_v2.0.a1 Prupe.7G163900_v2.0.a1 Prupe.7G163900_v2.0.a1 Prupe.7G163900_v2.0.a1 Prupe.7G163900_v2.0.a1 Prupe.7G163900_v2.0.a1
pyrus_communis	pycom02g10790
rosa_chinensis	RchiOBHm_Chr2g0100081 RchiOBHm_Chr2g0100111
rosa_laevigata	RLG00000016934
rosa_multiflora	Rmu_sc0000164.1_g000004 Rmu_sc0000164.1_g000009
rosa_roxburghii	Rroxscaffold_2G00142570
rosa_rugosa	Rorug02G0085500
rosa_samantha	Rh2AG134300 Rh2BG138000 Rh2CG139300 Rh2CG139600 Rh2DG139600 Rh2DG139900
rosa_wichuraiana	Rw2G010470 Rw2G010490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1191
Acc36I	ACCTGC	1 cut(s)	565
Acc65I	GGTACC	2 cut(s)	250, 1254
AccB1I	GGYRCC	2 cut(s)	250, 1254
AccII	CGCG	1 cut(s)	585
AciI	CCGC	1 cut(s)	572
AclWI	GGATC	3 cut(s)	365, 378, 989
AcsI	RAATTY	2 cut(s)	516, 1146
AcuI	CTGAAG	1 cut(s)	405
AcyI	GRCGYC	1 cut(s)	1188
AdeI	CACNNNGTG	1 cut(s)	29
AfaI	GTAC	3 cut(s)	252, 939, 1256
AfiI	CCNNNNNNNGG	6 cut(s)	260, 380, 433, 578, 734, 1226
AgsI	TTSAA	9 cut(s)	49, 140, 176, 926, 1054, 1064, 1183, 1199, 1360
AjuI	GAANNNNNNNTTGG	2 cut(s)	1017, 1049
AluBI	AGCT	6 cut(s)	34, 109, 392, 602, 781, 929
AluI	AGCT	6 cut(s)	34, 109, 392, 602, 781, 929
AlwI	GGATC	3 cut(s)	365, 378, 989
AoxI	GGCC	3 cut(s)	725, 1036, 1091
ApeKI	GCWGC	6 cut(s)	304, 392, 535, 599, 602, 1010
ApoI	RAATTY	2 cut(s)	516, 1146
ArsI	GACNNNNNNTTYG	2 cut(s)	501, 533
Asp700I	GAANNNNTTC	1 cut(s)	1355
Asp718I	GGTACC	2 cut(s)	250, 1254
AspLEI	GCGC	1 cut(s)	585
AspS9I	GGNCC	4 cut(s)	478, 509, 725, 1037
AsuHPI	GGTGA	2 cut(s)	217, 1111
AvaII	GGWCC	2 cut(s)	478, 509
AxyI	CCTNAGG	1 cut(s)	1165
BamHI	GGATCC	1 cut(s)	370
BanI	GGYRCC	2 cut(s)	250, 1254
BbsI	GAAGAC	1 cut(s)	827
BbvCI	CCTCAGC	1 cut(s)	35
BbvI	GCAGC	6 cut(s)	291, 379, 547, 589, 611, 997
BceAI	ACGGC	1 cut(s)	473
BfaI	CTAG	2 cut(s)	629, 1335
BfmI	CTRYAG	3 cut(s)	393, 533, 597
BfuAI	ACCTGC	1 cut(s)	565
BglII	AGATCT	1 cut(s)	154
BisI	GCNGC	6 cut(s)	305, 393, 536, 600, 603, 1011
BlsI	GCNGC	6 cut(s)	306, 394, 537, 601, 604, 1012
Bme18I	GGWCC	2 cut(s)	478, 509
BmgT120I	GGNCC	4 cut(s)	478, 509, 725, 1037
BmiI	GGNNCC	7 cut(s)	252, 312, 372, 480, 726, 1237, 1256
BmsI	GCATC	3 cut(s)	347, 838, 997
BpiI	GAAGAC	1 cut(s)	827
Bpu10I	CCTNAGC	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	1349
BsaHI	GRCGYC	1 cut(s)	1188
BsaJI	CCNNGG	2 cut(s)	1258, 1346
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	6 cut(s)	260, 380, 433, 578, 734, 1226
Bse118I	RCCGGY	1 cut(s)	433
Bse1I	ACTGG	3 cut(s)	568, 957, 1239
Bse21I	CCTNAGG	1 cut(s)	1165
BseDI	CCNNGG	2 cut(s)	1258, 1346
BseGI	GGATG	4 cut(s)	193, 654, 961, 1160
BseLI	CCNNNNNNNGG	6 cut(s)	260, 380, 433, 578, 734, 1226
BseMII	CTCAG	2 cut(s)	26, 1179
BseNI	ACTGG	3 cut(s)	568, 957, 1239
BseRI	GAGGAG	1 cut(s)	896
BseXI	GCAGC	6 cut(s)	291, 379, 547, 589, 611, 997
BsgI	GTGCAG	1 cut(s)	917
Bsh1236I	CGCG	1 cut(s)	585
BshFI	GGCC	3 cut(s)	727, 1038, 1093
BshNI	GGYRCC	2 cut(s)	250, 1254
BsiSI	CCGG	2 cut(s)	308, 434
BslI	CCNNNNNNNGG	6 cut(s)	260, 380, 433, 578, 734, 1226
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	3 cut(s)	727, 1038, 1093
Bsp1407I	TGTACA	1 cut(s)	937
Bsp143I	GATC	7 cut(s)	154, 213, 370, 795, 994, 1213, 1307
Bsp19I	CCATGG	1 cut(s)	1258
BspACI	CCGC	1 cut(s)	572
BspANI	GGCC	3 cut(s)	727, 1038, 1093
BspCNI	CTCAG	2 cut(s)	27, 1178
BspFNI	CGCG	1 cut(s)	585
BspHI	TCATGA	2 cut(s)	591, 1017
BspLI	GGNNCC	7 cut(s)	252, 312, 372, 480, 726, 1237, 1256
BspMAI	CTGCAG	3 cut(s)	397, 537, 601
BspMI	ACCTGC	1 cut(s)	565
BspPI	GGATC	3 cut(s)	365, 378, 989
BspQI	GCTCTTC	2 cut(s)	105, 448
BspT107I	GGYRCC	2 cut(s)	250, 1254
BsrFI	RCCGGY	1 cut(s)	433
BsrGI	TGTACA	1 cut(s)	937
BsrI	ACTGG	3 cut(s)	568, 957, 1239
BssAI	RCCGGY	1 cut(s)	433
BssECI	CCNNGG	2 cut(s)	1258, 1346
BssMI	GATC	7 cut(s)	154, 213, 370, 795, 994, 1213, 1307
BssNI	GRCGYC	1 cut(s)	1188
BssT1I	CCWWGG	2 cut(s)	1258, 1346
Bst4CI	ACNGT	2 cut(s)	27, 793
Bst6I	CTCTTC	2 cut(s)	105, 448
BstACI	GRCGYC	1 cut(s)	1188
BstAPI	GCANNNNNTGC	2 cut(s)	392, 401
BstAUI	TGTACA	1 cut(s)	937
BstC8I	GCNNGC	4 cut(s)	164, 439, 741, 783
BstDEI	CTNAG	2 cut(s)	35, 1165
BstDSI	CCRYGG	1 cut(s)	1258
BstENI	CCTNNNNNAGG	1 cut(s)	378
BstF5I	GGATG	4 cut(s)	193, 654, 961, 1160
BstFNI	CGCG	1 cut(s)	585
BstHHI	GCGC	1 cut(s)	585
BstKTI	GATC	7 cut(s)	157, 216, 373, 798, 997, 1216, 1310
BstMBI	GATC	7 cut(s)	154, 213, 370, 795, 994, 1213, 1307
BstMWI	GCNNNNNNNGC	3 cut(s)	392, 401, 580
BstNSI	RCATGY	2 cut(s)	441, 747
BstSFI	CTRYAG	3 cut(s)	393, 533, 597
BstUI	CGCG	1 cut(s)	585
BstV1I	GCAGC	6 cut(s)	291, 379, 547, 589, 611, 997
BstV2I	GAAGAC	1 cut(s)	827
BstX2I	RGATCY	3 cut(s)	154, 370, 994
BstYI	RGATCY	3 cut(s)	154, 370, 994
Bsu36I	CCTNAGG	1 cut(s)	1165
BsuRI	GGCC	3 cut(s)	727, 1038, 1093
BtgI	CCRYGG	1 cut(s)	1258
BtsCI	GGATG	4 cut(s)	193, 654, 961, 1160
BtsI	GCAGTG	2 cut(s)	411, 739
BtsIMutI	CAGTG	5 cut(s)	23, 411, 739, 950, 1246
BveI	ACCTGC	1 cut(s)	565
Cac8I	GCNNGC	4 cut(s)	164, 439, 741, 783
CciI	TCATGA	2 cut(s)	591, 1017
CfoI	GCGC	1 cut(s)	585
Cfr10I	RCCGGY	1 cut(s)	433
Cfr13I	GGNCC	4 cut(s)	478, 509, 725, 1037
Csp6I	GTAC	3 cut(s)	251, 938, 1255
CviAII	CATG	9 cut(s)	75, 438, 475, 592, 744, 941, 1018, 1259, 1289
CviQI	GTAC	3 cut(s)	251, 938, 1255
DdeI	CTNAG	2 cut(s)	35, 1165
DpnI	GATC	7 cut(s)	156, 215, 372, 797, 996, 1215, 1309
DpnII	GATC	7 cut(s)	154, 213, 370, 795, 994, 1213, 1307
DraI	TTTAAA	1 cut(s)	687
DraIII	CACNNNGTG	1 cut(s)	29
Eam1104I	CTCTTC	2 cut(s)	105, 448
EarI	CTCTTC	2 cut(s)	105, 448
Eco130I	CCWWGG	2 cut(s)	1258, 1346
Eco32I	GATATC	1 cut(s)	1340
Eco47I	GGWCC	2 cut(s)	478, 509
Eco57I	CTGAAG	1 cut(s)	405
Eco81I	CCTNAGG	1 cut(s)	1165
EcoNI	CCTNNNNNAGG	1 cut(s)	378
EcoO109I	RGGNCCY	1 cut(s)	725
EcoRV	GATATC	1 cut(s)	1340
EcoT14I	CCWWGG	2 cut(s)	1258, 1346
ErhI	CCWWGG	2 cut(s)	1258, 1346
FaeI	CATG	9 cut(s)	78, 441, 478, 595, 747, 944, 1021, 1262, 1292
FalI	AAGNNNNNCTT	6 cut(s)	542, 574, 869, 901, 903, 935
FatI	CATG	9 cut(s)	74, 437, 474, 591, 743, 940, 1017, 1258, 1288
Fnu4HI	GCNGC	6 cut(s)	305, 393, 536, 600, 603, 1011
FokI	GGATG	4 cut(s)	200, 641, 968, 1147
Fsp4HI	GCNGC	6 cut(s)	305, 393, 536, 600, 603, 1011
FspBI	CTAG	2 cut(s)	629, 1335
GlaI	GCGC	1 cut(s)	584
GluI	GCNGC	6 cut(s)	305, 393, 536, 600, 603, 1011
HaeIII	GGCC	3 cut(s)	727, 1038, 1093
HapII	CCGG	2 cut(s)	308, 434
HhaI	GCGC	1 cut(s)	585
Hin1I	GRCGYC	1 cut(s)	1188
Hin1II	CATG	9 cut(s)	78, 441, 478, 595, 747, 944, 1021, 1262, 1292
Hin6I	GCGC	1 cut(s)	583
HinP1I	GCGC	1 cut(s)	583
HindIII	AAGCTT	2 cut(s)	779, 927
HinfI	GANTC	4 cut(s)	176, 495, 662, 901
HpaII	CCGG	2 cut(s)	308, 434
HphI	GGTGA	2 cut(s)	217, 1111
Hpy166II	GTNNAC	2 cut(s)	509, 950
Hpy188I	TCNGA	4 cut(s)	288, 424, 682, 1156
Hpy188III	TCNNGA	5 cut(s)	49, 152, 592, 1018, 1064
Hpy8I	GTNNAC	2 cut(s)	509, 950
HpyAV	CCTTC	5 cut(s)	55, 285, 429, 687, 1126
HpyCH4III	ACNGT	2 cut(s)	27, 793
HpyCH4IV	ACGT	1 cut(s)	1188
HpyF10VI	GCNNNNNNNGC	3 cut(s)	392, 401, 580
HpyF3I	CTNAG	2 cut(s)	35, 1165
HpySE526I	ACGT	1 cut(s)	1188
Hsp92I	GRCGYC	1 cut(s)	1188
Hsp92II	CATG	9 cut(s)	78, 441, 478, 595, 747, 944, 1021, 1262, 1292
HspAI	GCGC	1 cut(s)	583
KpnI	GGTACC	2 cut(s)	254, 1258
Kzo9I	GATC	7 cut(s)	154, 213, 370, 795, 994, 1213, 1307
LguI	GCTCTTC	2 cut(s)	105, 448
LmnI	GCTCC	3 cut(s)	383, 790, 1419
Lsp1109I	GCAGC	6 cut(s)	291, 379, 547, 589, 611, 997
LweI	GCATC	3 cut(s)	347, 838, 997
MaeI	CTAG	2 cut(s)	629, 1335
MaeII	ACGT	1 cut(s)	1188
MaeIII	GTNAC	2 cut(s)	622, 1174
MalI	GATC	7 cut(s)	156, 215, 372, 797, 996, 1215, 1309
MboI	GATC	7 cut(s)	154, 213, 370, 795, 994, 1213, 1307
MboII	GAAGA	9 cut(s)	29, 92, 435, 832, 971, 1037, 1066, 1153, 1309
MflI	RGATCY	3 cut(s)	154, 370, 994
MmeI	TCCRAC	1 cut(s)	1402
MroXI	GAANNNNTTC	1 cut(s)	1355
MseI	TTAA	6 cut(s)	449, 614, 686, 806, 1137, 1428
MslI	CAYNNNNRTG	1 cut(s)	436
MspA1I	CMGCKG	1 cut(s)	602
MspI	CCGG	2 cut(s)	308, 434
Mva1269I	GAATGC	1 cut(s)	406
MvnI	CGCG	1 cut(s)	585
MwoI	GCNNNNNNNGC	3 cut(s)	392, 401, 580
NcoI	CCATGG	1 cut(s)	1258
NdeII	GATC	7 cut(s)	154, 213, 370, 795, 994, 1213, 1307
NlaIII	CATG	9 cut(s)	78, 441, 478, 595, 747, 944, 1021, 1262, 1292
NlaIV	GGNNCC	7 cut(s)	252, 312, 372, 480, 726, 1237, 1256
NmeAIII	GCCGAG	1 cut(s)	297
NmuCI	GTSAC	1 cut(s)	1174
NspI	RCATGY	2 cut(s)	441, 747
PaeI	GCATGC	1 cut(s)	441
PagI	TCATGA	2 cut(s)	591, 1017
PciSI	GCTCTTC	2 cut(s)	105, 448
PctI	GAATGC	1 cut(s)	406
PdmI	GAANNNNTTC	1 cut(s)	1355
PfeI	GAWTC	4 cut(s)	176, 495, 662, 901
PkrI	GCNGC	6 cut(s)	306, 394, 537, 601, 604, 1012
PspN4I	GGNNCC	7 cut(s)	252, 312, 372, 480, 726, 1237, 1256
PspPI	GGNCC	4 cut(s)	478, 509, 725, 1037
PstI	CTGCAG	3 cut(s)	397, 537, 601
PsuI	RGATCY	3 cut(s)	154, 370, 994
PvuII	CAGCTG	1 cut(s)	602
RsaI	GTAC	3 cut(s)	252, 939, 1256
RsaNI	GTAC	3 cut(s)	251, 938, 1255
RseI	CAYNNNNRTG	1 cut(s)	436
SapI	GCTCTTC	2 cut(s)	105, 448
SaqAI	TTAA	6 cut(s)	449, 614, 686, 806, 1137, 1428
SatI	GCNGC	6 cut(s)	305, 393, 536, 600, 603, 1011
Sau3AI	GATC	7 cut(s)	154, 213, 370, 795, 994, 1213, 1307
Sau96I	GGNCC	4 cut(s)	478, 509, 725, 1037
SfaNI	GCATC	3 cut(s)	347, 838, 997
SfcI	CTRYAG	3 cut(s)	393, 533, 597
SinI	GGWCC	2 cut(s)	478, 509
SmiMI	CAYNNNNRTG	1 cut(s)	436
SmlI	CTYRAG	1 cut(s)	1328
SmoI	CTYRAG	1 cut(s)	1328
SphI	GCATGC	1 cut(s)	441
SsiI	CCGC	1 cut(s)	572
SspMI	CTAG	2 cut(s)	629, 1335
StyI	CCWWGG	2 cut(s)	1258, 1346
TaaI	ACNGT	2 cut(s)	27, 793
TaiI	ACGT	1 cut(s)	1191
TaqI	TCGA	3 cut(s)	501, 798, 1275
TatI	WGTACW	1 cut(s)	937
TfiI	GAWTC	4 cut(s)	176, 495, 662, 901
Tru1I	TTAA	6 cut(s)	449, 614, 686, 806, 1137, 1428
Tru9I	TTAA	6 cut(s)	449, 614, 686, 806, 1137, 1428
TscAI	CASTG	5 cut(s)	30, 411, 739, 957, 1246
TseFI	GTSAC	1 cut(s)	1174
TseI	GCWGC	6 cut(s)	304, 392, 535, 599, 602, 1010
Tsp45I	GTSAC	1 cut(s)	1174
TspDTI	ATGAA	9 cut(s)	833, 878, 961, 972, 1034, 1038, 1069, 1101, 1143
TspRI	CASTG	5 cut(s)	30, 411, 739, 957, 1246
VpaK11BI	GGWCC	2 cut(s)	478, 509
XagI	CCTNNNNNAGG	1 cut(s)	378
XapI	RAATTY	2 cut(s)	516, 1146
XceI	RCATGY	2 cut(s)	441, 747
XmnI	GAANNNNTTC	1 cut(s)	1355
XspI	CTAG	2 cut(s)	629, 1335
ZraI	GACGTC	1 cut(s)	1189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.