Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006056

Physical Location & Seq

Genomic Coordinates Forward (+)

11722531 .. 11725812

Gene Structure 3282 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG139600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGACAGAAATAGTAGAAGAAACACTGTGTGAGCTGAGGCAAACCTTCAAGAGTGGTAAAACCAAAAGTGTTGCATGGAGGAAAACCCAACTCAATGCTCTTCGTCAGCTCGTCAAAGATAATGAGGAAAAGGTCTTTGAAGCACTCTATCAAGATCTTGGCAAGCACCCGATTGAATCTTACAGGGATGAGGTTGGAGTTGTGGTGAAAACAATCAATCATACTTTGAGCAATTTAGACAAATGGGTGGCACCTACAAAGGGTAAATTACCGTTGCTTTTTTTTCCGACAAGGGGAGAGGTGCTGCCGGAACCACTCGGCGTAGTTCTCATCTTTGCATCTTGGAACTTCCCAATATCTTTGGCTTTGGATCCTGTAATAGGAGCAATAGCTGCAGGGAATGCAGTGGTTCTAAAACCTTCAGACCAAGCACCGGCATGCTCTTCTTTAATTGCTAAAACCATACCTCAATACATGGACCCTAAAGCCGTAAGAATCATCGAGGGTGGACCACAAATTTGTGAAAAACTCCTGCAGCATAAGTGGGATAAGATATTCTTTACTGGAAGTCCGCAGGTAGGGCGCGTTGTCATGACTGCAGCTGCCAAGCATTTAACACCTGTTACACTAGAGCTGGGTGGAAAATGCCCTGTCATCCTTGATTCACTCTCCAATCCTTCGGATTTAAAGGTGGCGATCAAAAGAATTGTAAGTGGAAAGTGGGGACCTTGCAGTGGGCAGGCATGTATAGGAATAGATTATATGCTCGTTGAGGAAAAGCTTGCTCCTACTGTGATCGAATTGTTAAAGAAAACGATGAAGAGCTTTTATACTGAAAGCCCAAAAGATGCAAATTGCATGGCCAGAATTGTAAATAAGCACCACTTTCAGAGAGTGCAGAATCTCCTCAAAGACCCTCTTGTTGAAGCTTCCATTGTACATGGTGGTTCACTGGATGAAGAAAACCTGTTCATTGAGCCAATAATCTTGTTAGATCCACCACTTGATGCTGCAATCATGAATGAAGAAATCTTTGGCCCACTACTTCCAGTAATCACTTTGAAGAACATTCAAGAAAGCATTGAATTCATAAATGAAAGGCCAAAACCTCTAACCATTTACGCCTTCACCAAAGATGAAAACTTTAAGAAGAAAATTTTATCAGAAACATCCTCAGGGAGCGTGACTTTCAATGACGTCTTGATTCAATTTCTCTGTGATGATCTACCCTTTGGTGGTGTTGGTTCCAGTGGATTTGGGAGGTACCATGGGAAGTTTTCTTTTGATACTTTCAGCCATGAGAAAGCAGTTCTGCGAGCAGGCTTCTTCCCTGAACTTGAGGCTAGATATCCTCCTTGGAATAACTTCAAAATGACATTTATCAAACTTGCCTATGACCTTGACTACTTTGGACTATTTCTGCTCCTTGTTGGACTTAAAAGGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

482

Amino Acids

53.78

Weight (kDa)

7.1

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	5 - 437	6e-82	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36250
fragaria_vesca	FvH4_1g12280 FvH4_1g12280
malus_domestica	MD02G1136600.v1.1 MD15G1250400.v1.1
prunus_persica	Prupe.7G163900_v2.0.a1 Prupe.7G163900_v2.0.a1 Prupe.7G163900_v2.0.a1 Prupe.7G163900_v2.0.a1 Prupe.7G163900_v2.0.a1 Prupe.7G163900_v2.0.a1
pyrus_communis	pycom02g10790
rosa_chinensis	RchiOBHm_Chr2g0100081 RchiOBHm_Chr2g0100111
rosa_laevigata	RLG00000016934
rosa_multiflora	Rmu_sc0000164.1_g000004 Rmu_sc0000164.1_g000009
rosa_roxburghii	Rroxscaffold_2G00142570
rosa_rugosa	Rorug02G0085500
rosa_samantha	Rh2AG134300 Rh2BG138000 Rh2CG139300 Rh2CG139600 Rh2DG139600 Rh2DG139900
rosa_wichuraiana	Rw2G010470 Rw2G010490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1200
Acc36I	ACCTGC	1 cut(s)	565
Acc65I	GGTACC	1 cut(s)	1263
AccB1I	GGYRCC	2 cut(s)	250, 1263
AccII	CGCG	1 cut(s)	585
AciI	CCGC	1 cut(s)	572
AclWI	GGATC	3 cut(s)	365, 378, 989
AcoI	YGGCCR	1 cut(s)	861
AcsI	RAATTY	3 cut(s)	516, 1085, 1155
AcuI	CTGAAG	1 cut(s)	405
AcyI	GRCGYC	1 cut(s)	1197
AdeI	CACNNNGTG	1 cut(s)	29
AfaI	GTAC	2 cut(s)	939, 1265
AfiI	CCNNNNNNNGG	7 cut(s)	260, 293, 380, 433, 578, 734, 1235
AjuI	GAANNNNNNNTTGG	2 cut(s)	1017, 1049
AluBI	AGCT	8 cut(s)	34, 109, 392, 602, 634, 781, 825, 929
AluI	AGCT	8 cut(s)	34, 109, 392, 602, 634, 781, 825, 929
AlwI	GGATC	3 cut(s)	365, 378, 989
AoxI	GGCC	3 cut(s)	861, 1036, 1100
ApeKI	GCWGC	6 cut(s)	304, 392, 535, 599, 602, 1010
ApoI	RAATTY	3 cut(s)	516, 1085, 1155
ArsI	GACNNNNNNTTYG	2 cut(s)	501, 533
Asp700I	GAANNNNTTC	1 cut(s)	1364
Asp718I	GGTACC	1 cut(s)	1263
AspLEI	GCGC	1 cut(s)	585
AspS9I	GGNCC	4 cut(s)	478, 509, 725, 1037
AsuHPI	GGTGA	2 cut(s)	217, 1120
AvaII	GGWCC	3 cut(s)	478, 509, 725
AxyI	CCTNAGG	1 cut(s)	1174
BalI	TGGCCA	1 cut(s)	863
BamHI	GGATCC	1 cut(s)	370
BanI	GGYRCC	2 cut(s)	250, 1263
BbvCI	CCTCAGC	1 cut(s)	35
BbvI	GCAGC	6 cut(s)	291, 379, 547, 589, 611, 997
BceAI	ACGGC	1 cut(s)	473
BfaI	CTAG	2 cut(s)	629, 1344
BfmI	CTRYAG	3 cut(s)	393, 533, 597
BfuAI	ACCTGC	1 cut(s)	565
BglII	AGATCT	1 cut(s)	154
BisI	GCNGC	6 cut(s)	305, 393, 536, 600, 603, 1011
BlsI	GCNGC	6 cut(s)	306, 394, 537, 601, 604, 1012
Bme18I	GGWCC	3 cut(s)	478, 509, 725
BmgT120I	GGNCC	4 cut(s)	478, 509, 725, 1037
BmiI	GGNNCC	7 cut(s)	252, 312, 372, 480, 726, 1246, 1265
BmsI	GCATC	3 cut(s)	347, 838, 997
Bpu10I	CCTNAGC	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	1358
BsaHI	GRCGYC	1 cut(s)	1197
BsaJI	CCNNGG	2 cut(s)	1267, 1355
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	7 cut(s)	260, 293, 380, 433, 578, 734, 1235
Bse118I	RCCGGY	1 cut(s)	433
Bse1I	ACTGG	4 cut(s)	568, 957, 1049, 1248
Bse21I	CCTNAGG	1 cut(s)	1174
BseDI	CCNNGG	2 cut(s)	1267, 1355
BseGI	GGATG	4 cut(s)	193, 654, 961, 1169
BseLI	CCNNNNNNNGG	7 cut(s)	260, 293, 380, 433, 578, 734, 1235
BseMII	CTCAG	2 cut(s)	26, 1188
BseNI	ACTGG	4 cut(s)	568, 957, 1049, 1248
BseRI	GAGGAG	1 cut(s)	896
BseXI	GCAGC	6 cut(s)	291, 379, 547, 589, 611, 997
BseYI	CCCAGC	1 cut(s)	634
BsgI	GTGCAG	1 cut(s)	917
Bsh1236I	CGCG	1 cut(s)	585
BshFI	GGCC	3 cut(s)	863, 1038, 1102
BshNI	GGYRCC	2 cut(s)	250, 1263
BsiSI	CCGG	2 cut(s)	308, 434
BslFI	GGGAC	1 cut(s)	738
BslI	CCNNNNNNNGG	7 cut(s)	260, 293, 380, 433, 578, 734, 1235
BsmFI	GGGAC	1 cut(s)	738
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	3 cut(s)	863, 1038, 1102
Bsp1407I	TGTACA	1 cut(s)	937
Bsp143I	GATC	6 cut(s)	154, 370, 696, 795, 994, 1222
Bsp19I	CCATGG	1 cut(s)	1267
BspACI	CCGC	1 cut(s)	572
BspANI	GGCC	3 cut(s)	863, 1038, 1102
BspCNI	CTCAG	2 cut(s)	27, 1187
BspFNI	CGCG	1 cut(s)	585
BspHI	TCATGA	2 cut(s)	591, 1017
BspLI	GGNNCC	7 cut(s)	252, 312, 372, 480, 726, 1246, 1265
BspMAI	CTGCAG	3 cut(s)	397, 537, 601
BspMI	ACCTGC	1 cut(s)	565
BspPI	GGATC	3 cut(s)	365, 378, 989
BspQI	GCTCTTC	3 cut(s)	105, 448, 815
BspT107I	GGYRCC	2 cut(s)	250, 1263
BsrFI	RCCGGY	1 cut(s)	433
BsrGI	TGTACA	1 cut(s)	937
BsrI	ACTGG	4 cut(s)	568, 957, 1049, 1248
BssAI	RCCGGY	1 cut(s)	433
BssECI	CCNNGG	2 cut(s)	1267, 1355
BssMI	GATC	6 cut(s)	154, 370, 696, 795, 994, 1222
BssNI	GRCGYC	1 cut(s)	1197
BssT1I	CCWWGG	2 cut(s)	1267, 1355
Bst4CI	ACNGT	3 cut(s)	27, 273, 793
Bst6I	CTCTTC	3 cut(s)	105, 448, 815
BstACI	GRCGYC	1 cut(s)	1197
BstAPI	GCANNNNNTGC	2 cut(s)	392, 401
BstAUI	TGTACA	1 cut(s)	937
BstC8I	GCNNGC	6 cut(s)	164, 439, 741, 783, 1317, 1321
BstDEI	CTNAG	2 cut(s)	35, 1174
BstDSI	CCRYGG	1 cut(s)	1267
BstENI	CCTNNNNNAGG	1 cut(s)	378
BstF5I	GGATG	4 cut(s)	193, 654, 961, 1169
BstFNI	CGCG	1 cut(s)	585
BstHHI	GCGC	1 cut(s)	585
BstKTI	GATC	6 cut(s)	157, 373, 699, 798, 997, 1225
BstMBI	GATC	6 cut(s)	154, 370, 696, 795, 994, 1222
BstMWI	GCNNNNNNNGC	3 cut(s)	392, 401, 580
BstNSI	RCATGY	2 cut(s)	441, 747
BstSFI	CTRYAG	3 cut(s)	393, 533, 597
BstUI	CGCG	1 cut(s)	585
BstV1I	GCAGC	6 cut(s)	291, 379, 547, 589, 611, 997
BstX2I	RGATCY	3 cut(s)	154, 370, 994
BstYI	RGATCY	3 cut(s)	154, 370, 994
Bsu36I	CCTNAGG	1 cut(s)	1174
BsuRI	GGCC	3 cut(s)	863, 1038, 1102
BtgI	CCRYGG	1 cut(s)	1267
BtsCI	GGATG	4 cut(s)	193, 654, 961, 1169
BtsI	GCAGTG	2 cut(s)	411, 739
BtsIMutI	CAGTG	5 cut(s)	23, 411, 739, 950, 1255
BveI	ACCTGC	1 cut(s)	565
Cac8I	GCNNGC	6 cut(s)	164, 439, 741, 783, 1317, 1321
CciI	TCATGA	2 cut(s)	591, 1017
CfoI	GCGC	1 cut(s)	585
Cfr10I	RCCGGY	1 cut(s)	433
Cfr13I	GGNCC	4 cut(s)	478, 509, 725, 1037
Csp6I	GTAC	2 cut(s)	938, 1264
CviQI	GTAC	2 cut(s)	938, 1264
DdeI	CTNAG	2 cut(s)	35, 1174
DpnI	GATC	6 cut(s)	156, 372, 698, 797, 996, 1224
DpnII	GATC	6 cut(s)	154, 370, 696, 795, 994, 1222
DraI	TTTAAA	1 cut(s)	687
DraIII	CACNNNGTG	1 cut(s)	29
EaeI	YGGCCR	1 cut(s)	861
Eam1104I	CTCTTC	3 cut(s)	105, 448, 815
EarI	CTCTTC	3 cut(s)	105, 448, 815
Eco130I	CCWWGG	2 cut(s)	1267, 1355
Eco32I	GATATC	1 cut(s)	1349
Eco47I	GGWCC	3 cut(s)	478, 509, 725
Eco57I	CTGAAG	1 cut(s)	405
Eco81I	CCTNAGG	1 cut(s)	1174
EcoNI	CCTNNNNNAGG	1 cut(s)	378
EcoO109I	RGGNCCY	1 cut(s)	725
EcoRI	GAATTC	1 cut(s)	1085
EcoRV	GATATC	1 cut(s)	1349
EcoT14I	CCWWGG	2 cut(s)	1267, 1355
ErhI	CCWWGG	2 cut(s)	1267, 1355
FalI	AAGNNNNNCTT	6 cut(s)	542, 574, 869, 901, 903, 935
FaqI	GGGAC	1 cut(s)	738
Fnu4HI	GCNGC	6 cut(s)	305, 393, 536, 600, 603, 1011
FokI	GGATG	4 cut(s)	200, 641, 968, 1156
Fsp4HI	GCNGC	6 cut(s)	305, 393, 536, 600, 603, 1011
FspBI	CTAG	2 cut(s)	629, 1344
GlaI	GCGC	1 cut(s)	584
GluI	GCNGC	6 cut(s)	305, 393, 536, 600, 603, 1011
GsaI	CCCAGC	1 cut(s)	638
HaeIII	GGCC	3 cut(s)	863, 1038, 1102
HapII	CCGG	2 cut(s)	308, 434
HhaI	GCGC	1 cut(s)	585
Hin1I	GRCGYC	1 cut(s)	1197
Hin6I	GCGC	1 cut(s)	583
HinP1I	GCGC	1 cut(s)	583
HindIII	AAGCTT	2 cut(s)	779, 927
HinfI	GANTC	5 cut(s)	176, 495, 662, 901, 1204
HpaII	CCGG	2 cut(s)	308, 434
HphI	GGTGA	2 cut(s)	217, 1120
Hpy166II	GTNNAC	2 cut(s)	509, 950
Hpy188I	TCNGA	5 cut(s)	288, 424, 682, 891, 1165
Hpy188III	TCNNGA	6 cut(s)	49, 152, 592, 1018, 1073, 1201
Hpy8I	GTNNAC	2 cut(s)	509, 950
HpyAV	CCTTC	4 cut(s)	55, 429, 687, 1135
HpyCH4III	ACNGT	3 cut(s)	27, 273, 793
HpyCH4IV	ACGT	1 cut(s)	1197
HpyF10VI	GCNNNNNNNGC	3 cut(s)	392, 401, 580
HpyF3I	CTNAG	2 cut(s)	35, 1174
HpySE526I	ACGT	1 cut(s)	1197
Hsp92I	GRCGYC	1 cut(s)	1197
HspAI	GCGC	1 cut(s)	583
KpnI	GGTACC	1 cut(s)	1267
Kzo9I	GATC	6 cut(s)	154, 370, 696, 795, 994, 1222
LguI	GCTCTTC	3 cut(s)	105, 448, 815
LmnI	GCTCC	4 cut(s)	383, 790, 1179, 1428
Lsp1109I	GCAGC	6 cut(s)	291, 379, 547, 589, 611, 997
LweI	GCATC	3 cut(s)	347, 838, 997
MaeI	CTAG	2 cut(s)	629, 1344
MaeII	ACGT	1 cut(s)	1197
MaeIII	GTNAC	2 cut(s)	622, 1183
MalI	GATC	6 cut(s)	156, 372, 698, 797, 996, 1224
MboI	GATC	6 cut(s)	154, 370, 696, 795, 994, 1222
MboII	GAAGA	9 cut(s)	29, 92, 435, 832, 971, 1037, 1075, 1162, 1318
MflI	RGATCY	3 cut(s)	154, 370, 994
MlsI	TGGCCA	1 cut(s)	863
MluNI	TGGCCA	1 cut(s)	863
MmeI	TCCRAC	3 cut(s)	175, 311, 1411
Mox20I	TGGCCA	1 cut(s)	863
MroXI	GAANNNNTTC	1 cut(s)	1364
MscI	TGGCCA	1 cut(s)	863
MseI	TTAA	6 cut(s)	449, 614, 686, 806, 1146, 1437
MslI	CAYNNNNRTG	1 cut(s)	436
Msp20I	TGGCCA	1 cut(s)	863
MspA1I	CMGCKG	1 cut(s)	602
MspI	CCGG	2 cut(s)	308, 434
Mva1269I	GAATGC	1 cut(s)	406
MvnI	CGCG	1 cut(s)	585
MwoI	GCNNNNNNNGC	3 cut(s)	392, 401, 580
NcoI	CCATGG	1 cut(s)	1267
NdeII	GATC	6 cut(s)	154, 370, 696, 795, 994, 1222
NlaIV	GGNNCC	7 cut(s)	252, 312, 372, 480, 726, 1246, 1265
NmeAIII	GCCGAG	1 cut(s)	297
NmuCI	GTSAC	1 cut(s)	1183
NspI	RCATGY	2 cut(s)	441, 747
PaeI	GCATGC	1 cut(s)	441
PagI	TCATGA	2 cut(s)	591, 1017
PciSI	GCTCTTC	3 cut(s)	105, 448, 815
PctI	GAATGC	1 cut(s)	406
PdmI	GAANNNNTTC	1 cut(s)	1364
PfeI	GAWTC	5 cut(s)	176, 495, 662, 901, 1204
PkrI	GCNGC	6 cut(s)	306, 394, 537, 601, 604, 1012
PpuMI	RGGWCCY	1 cut(s)	725
Psp5II	RGGWCCY	1 cut(s)	725
PspFI	CCCAGC	1 cut(s)	634
PspN4I	GGNNCC	7 cut(s)	252, 312, 372, 480, 726, 1246, 1265
PspPI	GGNCC	4 cut(s)	478, 509, 725, 1037
PspPPI	RGGWCCY	1 cut(s)	725
PstI	CTGCAG	3 cut(s)	397, 537, 601
PsuI	RGATCY	3 cut(s)	154, 370, 994
PvuII	CAGCTG	1 cut(s)	602
RsaI	GTAC	2 cut(s)	939, 1265
RsaNI	GTAC	2 cut(s)	938, 1264
RseI	CAYNNNNRTG	1 cut(s)	436
SapI	GCTCTTC	3 cut(s)	105, 448, 815
SaqAI	TTAA	6 cut(s)	449, 614, 686, 806, 1146, 1437
SatI	GCNGC	6 cut(s)	305, 393, 536, 600, 603, 1011
Sau3AI	GATC	6 cut(s)	154, 370, 696, 795, 994, 1222
Sau96I	GGNCC	4 cut(s)	478, 509, 725, 1037
SfaNI	GCATC	3 cut(s)	347, 838, 997
SfcI	CTRYAG	3 cut(s)	393, 533, 597
SinI	GGWCC	3 cut(s)	478, 509, 725
SmiMI	CAYNNNNRTG	1 cut(s)	436
SmlI	CTYRAG	1 cut(s)	1337
SmoI	CTYRAG	1 cut(s)	1337
SphI	GCATGC	1 cut(s)	441
SsiI	CCGC	1 cut(s)	572
SspMI	CTAG	2 cut(s)	629, 1344
StyI	CCWWGG	2 cut(s)	1267, 1355
TaaI	ACNGT	3 cut(s)	27, 273, 793
TaiI	ACGT	1 cut(s)	1200
TaqI	TCGA	2 cut(s)	501, 798
TatI	WGTACW	1 cut(s)	937
TfiI	GAWTC	5 cut(s)	176, 495, 662, 901, 1204
Tru1I	TTAA	6 cut(s)	449, 614, 686, 806, 1146, 1437
Tru9I	TTAA	6 cut(s)	449, 614, 686, 806, 1146, 1437
TscAI	CASTG	5 cut(s)	30, 411, 739, 957, 1255
TseFI	GTSAC	1 cut(s)	1183
TseI	GCWGC	6 cut(s)	304, 392, 535, 599, 602, 1010
Tsp45I	GTSAC	1 cut(s)	1183
TspDTI	ATGAA	8 cut(s)	833, 961, 972, 1034, 1038, 1078, 1110, 1152
TspRI	CASTG	5 cut(s)	30, 411, 739, 957, 1255
VpaK11BI	GGWCC	3 cut(s)	478, 509, 725
XagI	CCTNNNNNAGG	1 cut(s)	378
XapI	RAATTY	3 cut(s)	516, 1085, 1155
XceI	RCATGY	2 cut(s)	441, 747
XmnI	GAANNNNTTC	1 cut(s)	1364
XspI	CTAG	2 cut(s)	629, 1344
ZraI	GACGTC	1 cut(s)	1198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.